Michael Love
| Snapshot Date: 2026-03-13 13:40 -0400 (Fri, 13 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/nullranges |
| git_branch: devel |
| git_last_commit: ffc311b |
| git_last_commit_date: 2025-11-20 13:19:43 -0400 (Thu, 20 Nov 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-14 11:34 -0400 (Sat, 14 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4837 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4050 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1485/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nullranges 1.17.3 (landing page) Michael Love
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for nullranges in R Universe. | ||||||||||||||
|
To the developers/maintainers of the nullranges package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: nullranges |
| Version: 1.17.3 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data nullranges |
| StartedAt: 2026-03-13 16:34:13 -0400 (Fri, 13 Mar 2026) |
| EndedAt: 2026-03-13 16:35:04 -0400 (Fri, 13 Mar 2026) |
| EllapsedTime: 50.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data nullranges
###
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* checking for file ‘nullranges/DESCRIPTION’ ... OK
* preparing ‘nullranges’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘bootRanges.Rmd’ using rmarkdown
Quitting from bootRanges.Rmd:284-296 [seg-cbs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `segmentDensity()`:
! type='cbs' requires installing the Bioconductor package 'DNAcopy'
---
Backtrace:
▆
1. └─nullranges::segmentDensity(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bootRanges.Rmd' failed with diagnostics:
type='cbs' requires installing the Bioconductor package 'DNAcopy'
--- failed re-building ‘bootRanges.Rmd’
--- re-building ‘matchRanges.Rmd’ using rmarkdown
2026-03-13 16:34:41.267 R[41797:148290416] XType: Using static font registry.
--- finished re-building ‘matchRanges.Rmd’
--- re-building ‘matching_ginteractions.Rmd’ using rmarkdown
--- finished re-building ‘matching_ginteractions.Rmd’
--- re-building ‘matching_granges.Rmd’ using rmarkdown
--- finished re-building ‘matching_granges.Rmd’
--- re-building ‘matching_pool_set.Rmd’ using rmarkdown
--- finished re-building ‘matching_pool_set.Rmd’
--- re-building ‘nullranges.Rmd’ using rmarkdown
--- finished re-building ‘nullranges.Rmd’
SUMMARY: processing the following file failed:
‘bootRanges.Rmd’
Error: Vignette re-building failed.
Execution halted