Multiple platform build/check report for BioC 3.24 - BUILD results for msqrob2 on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4878
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4663
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for msqrob2 on taishan

To the developers/maintainers of the msqrob2 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/msqrob2.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: msqrob2

Version: 1.21.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data msqrob2

StartedAt: 2026-05-05 04:39:56 -0000 (Tue, 05 May 2026)

EndedAt: 2026-05-05 04:44:40 -0000 (Tue, 05 May 2026)

EllapsedTime: 284.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data msqrob2
###
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* checking for file ‘msqrob2/DESCRIPTION’ ... OK
* preparing ‘msqrob2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cptac.Rmd’ using rmarkdown
--- finished re-building ‘cptac.Rmd’

--- re-building ‘staesSpikein-DIA-NN.Rmd’ using rmarkdown

Quitting from staesSpikein-DIA-NN.Rmd:85-91 [import_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! NotImplemented: Support for codec 'zstd' not built
In order to read this file, you will need to reinstall arrow with additional features enabled.
Set one of these environment variables before installing:

 * Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd')
 * Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd')

See https://arrow.apache.org/docs/r/articles/install.html for details
---
Backtrace:
    ▆
 1. └─arrow::read_parquet(precursorFile)
 2.   └─base::tryCatch(reader$ReadTable(), error = read_compressed_error)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'staesSpikein-DIA-NN.Rmd' failed with diagnostics:
NotImplemented: Support for codec 'zstd' not built
In order to read this file, you will need to reinstall arrow with additional features enabled.
Set one of these environment variables before installing:

 * Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd')
 * Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd')

See https://arrow.apache.org/docs/r/articles/install.html for details
--- failed re-building ‘staesSpikein-DIA-NN.Rmd’

--- re-building ‘staesSpikein-spectronaut.Rmd’ using rmarkdown
--- finished re-building ‘staesSpikein-spectronaut.Rmd’

SUMMARY: processing the following file failed:
  ‘staesSpikein-DIA-NN.Rmd’

Error: Vignette re-building failed.
Execution halted