Richard Heery
| Snapshot Date: 2026-05-18 13:45 -0400 (Mon, 18 May 2026) |
| git_url: https://git.bioconductor.org/packages/methodical |
| git_branch: devel |
| git_last_commit: 1387d02 |
| git_last_commit_date: 2026-05-01 10:20:44 -0400 (Fri, 01 May 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-19 12:54 -0400 (Tue, 19 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4898 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4617 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1277/2377 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| methodical 1.9.0 (landing page) Richard Heery
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | ||||||||||
| See other builds for methodical in R Universe. | ||||||||||||||
|
To the developers/maintainers of the methodical package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methodical.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: methodical |
| Version: 1.9.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methodical |
| StartedAt: 2026-05-18 18:37:47 -0400 (Mon, 18 May 2026) |
| EndedAt: 2026-05-18 18:38:08 -0400 (Mon, 18 May 2026) |
| EllapsedTime: 21.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methodical
###
##############################################################################
##############################################################################
* checking for file ‘methodical/DESCRIPTION’ ... OK
* preparing ‘methodical’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown
Quitting from calculating_methylation_transcription_correlations.Rmd:23-27 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'TumourMethData'
---
Backtrace:
▆
1. └─base::library(TumourMethData)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'calculating_methylation_transcription_correlations.Rmd' failed with diagnostics:
there is no package called 'TumourMethData'
--- failed re-building ‘calculating_methylation_transcription_correlations.Rmd’
--- re-building ‘working_with_meth_rses.Rmd’ using rmarkdown
Quitting from working_with_meth_rses.Rmd:23-26 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'TumourMethData'
---
Backtrace:
▆
1. └─base::library(TumourMethData)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'working_with_meth_rses.Rmd' failed with diagnostics:
there is no package called 'TumourMethData'
--- failed re-building ‘working_with_meth_rses.Rmd’
SUMMARY: processing the following files failed:
‘calculating_methylation_transcription_correlations.Rmd’
‘working_with_meth_rses.Rmd’
Error: Vignette re-building failed.
Execution halted