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This page was generated on 2026-03-07 11:33 -0500 (Sat, 07 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4453
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" 3376
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1133/2357HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lemur 1.9.0  (landing page)
Constantin Ahlmann-Eltze
Snapshot Date: 2026-03-06 13:40 -0500 (Fri, 06 Mar 2026)
git_url: https://git.bioconductor.org/packages/lemur
git_branch: devel
git_last_commit: 182c201
git_last_commit_date: 2026-02-18 11:39:57 -0500 (Wed, 18 Feb 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for lemur in R Universe.

BUILD results for lemur on kjohnson3

To the developers/maintainers of the lemur package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/lemur.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: lemur
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data lemur
StartedAt: 2026-03-06 16:12:47 -0500 (Fri, 06 Mar 2026)
EndedAt: 2026-03-06 16:13:07 -0500 (Fri, 06 Mar 2026)
EllapsedTime: 20.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data lemur
###
##############################################################################
##############################################################################


* checking for file ‘lemur/DESCRIPTION’ ... OK
* preparing ‘lemur’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Introduction.qmd’ using html


processing file: Introduction.qmd
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12/51                                        
13/51 [load_packages]                        
Error in `library()`:
! there is no package called 'tidyverse'
Backtrace:
    ▆
 1. └─base::library("tidyverse")
Warning message:
Duplicated chunk option(s) 'label' in both chunk header and pipe comments of the chunk 'init'. 

Quitting from Introduction.qmd:133-141 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tidyverse'
---
Backtrace:
    ▆
 1. └─base::library("tidyverse")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Execution halted
Error: processing vignette 'Introduction.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
  -----------------------------
  
  
  processing file: Introduction.qmd
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  12/51
  13/51 [load_packages]
  Error in `library()`:
  ! there is no package called 'tidyverse'
  Backtrace:
  ▆
  1. └─base::library("tidyverse")
  Warning message:
  Duplicated chunk option(s) 'label' in both chunk header and pipe comments of
  the chunk 'init'.
  
  Quitting from Introduction.qmd:133-141 [load_packages]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error in `library()`:
  ! there is no package called 'tidyverse'
  ---
  Backtrace:
  ▆
  1. └─base::library("tidyverse")
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Execution halted
  
Caused by error:
! System command 'quarto' failed
Warning: Duplicated chunk option(s) 'label' in both chunk header and pipe comments of the chunk 'init'.
--- failed re-building ‘Introduction.qmd’

SUMMARY: processing the following file failed:
  ‘Introduction.qmd’

Error: Vignette re-building failed.
Execution halted