Till Soerensen
| Snapshot Date: 2025-09-19 13:45 -0400 (Fri, 19 Sep 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 9098b87 |
| git_last_commit_date: 2025-09-18 03:52:53 -0400 (Thu, 18 Sep 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-09-20 12:07 -0400 (Sat, 20 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4814 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4603 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4547 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4553 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1040/2333 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.41.2 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.41.2 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-09-19 01:27:21 -0000 (Fri, 19 Sep 2025) |
| EndedAt: 2025-09-19 01:31:22 -0000 (Fri, 19 Sep 2025) |
| EllapsedTime: 241.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (18), ICL=166<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (18), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 6 iterations
cluster 2(N=81) has 2 sub-cluster at 2 (13), ICL=75<>30
split 2 into 2 clusters
cluster 1(N=223) has 2 sub-cluster at 2 (7), ICL=46<>30
split 1 into 2 clusters
cluster 1(N=223) has 2 sub-cluster at 2 (7), ICL=0<>30
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 4(N=88) has 2 sub-cluster at 2 (7), ICL=111<>34
split 4 into 2 clusters
cluster 2(N=76) has 2 sub-cluster at 2 (7), ICL=48<>34
split 2 into 2 clusters
cluster 3(N=69) has 3 sub-cluster at 4 (28), ICL=13<>34
cluster 1(N=382) has 6 sub-cluster at 6 (19), ICL=5.2<>34
cluster 1(N=382) has 6 sub-cluster at 6 (19), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 10 iterations
cluster 2(N=60) has 2 sub-cluster at 2 (5), ICL=40<>37
split 2 into 2 clusters
cluster 5(N=107) has 2 sub-cluster at 2 (22), ICL=24<>37
cluster 4(N=142) has 5 sub-cluster at 5 (27), ICL=21<>37
cluster 6(N=43) has 3 sub-cluster at 3 (15), ICL=19<>37
cluster 3(N=60) has 5 sub-cluster at 5 (5), ICL=19<>37
cluster 2(N=60) has 2 sub-cluster at 2 (5), ICL=0<>37
Model Refinement takes 0.1 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->7 N=2420
EM 7 takes 0 mins, 7 iterations
cluster 2(N=49) has 4 sub-cluster at 4 (6), ICL=40<>41
cluster 5(N=262) has 2 sub-cluster at 2 (6), ICL=33<>41
cluster 7(N=117) has 6 sub-cluster at 6 (23), ICL=20<>41
cluster 4(N=139) has 7 sub-cluster at 8 (24), ICL=18<>41
cluster 6(N=253) has 3 sub-cluster at 3 (11), ICL=13<>41
cluster 3(N=65) has 2 sub-cluster at 2 (12), ICL=7.5<>41
cluster 2(N=49) has 4 sub-cluster at 4 (6), ICL=0<>41
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->7 N=4841
EM 7 takes 0 mins, 6 iterations
cluster 2(N=137) has 3 sub-cluster at 3 (18), ICL=108<>45
split 2 into 3 clusters
cluster 4(N=269) has 3 sub-cluster at 3 (15), ICL=32<>45
cluster 7(N=182) has 5 sub-cluster at 5 (26), ICL=23<>45
cluster 5(N=558) has 2 sub-cluster at 2 (6), ICL=20<>45
cluster 6(N=446) has 3 sub-cluster at 3 (12), ICL=10<>45
cluster 3(N=155) has 4 sub-cluster at 5 (31), ICL=6<>45
cluster 2(N=137) has 3 sub-cluster at 3 (18), ICL=0<>45
Model Refinement takes 0.17 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=7->9 N=9682
EM 9 takes 0.017 mins, 7 iterations
cluster 6(N=556) has 3 sub-cluster at 3 (11), ICL=65<>48
split 6 into 3 clusters
cluster 2(N=152) has 4 sub-cluster at 4 (9), ICL=42<>48
cluster 9(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 7(N=1121) has 2 sub-cluster at 2 (11), ICL=31<>48
cluster 4(N=60) has 2 sub-cluster at 2 (13), ICL=31<>48
cluster 8(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 5(N=316) has 7 sub-cluster at 8 (39), ICL=3.2<>48
cluster 3(N=75) has 2 sub-cluster at 3 (6), ICL=0.0039<>48
cluster 2(N=152) has 4 sub-cluster at 4 (9), ICL=0<>48
Model Refinement takes 0.22 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->11 N=9682
EM 11 takes 0 mins, 4 iterations
cluster 10(N=898) has 2 sub-cluster at 2 (34), ICL=54<>48
split 10 into 2 clusters
cluster 2(N=154) has 4 sub-cluster at 4 (16), ICL=43<>48
cluster 4(N=60) has 4 sub-cluster at 4 (26), ICL=39<>48
cluster 11(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 9(N=1121) has 2 sub-cluster at 2 (12), ICL=27<>48
cluster 8(N=86) has 2 sub-cluster at 2 (12), ICL=18<>48
cluster 6(N=362) has 6 sub-cluster at 7 (24), ICL=14<>48
cluster 3(N=74) has 3 sub-cluster at 4 (44), ICL=13<>48
cluster 7(N=181) has 3 sub-cluster at 4 (36), ICL=9.4<>48
cluster 5(N=308) has 2 sub-cluster at 2 (8), ICL=7.2<>48
cluster 2(N=154) has 4 sub-cluster at 4 (16), ICL=0<>48
Model Refinement takes 0.25 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=11->12 N=9682
EM 12 takes 0 mins, 3 iterations
cluster 2(N=156) has 4 sub-cluster at 4 (16), ICL=43<>48
cluster 9(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48
cluster 12(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 4(N=61) has 2 sub-cluster at 2 (9), ICL=31<>48
cluster 8(N=86) has 2 sub-cluster at 2 (6), ICL=18<>48
cluster 3(N=74) has 3 sub-cluster at 4 (44), ICL=13<>48
cluster 6(N=362) has 2 sub-cluster at 2 (5), ICL=12<>48
cluster 5(N=308) has 2 sub-cluster at 2 (8), ICL=7.1<>48
cluster 7(N=174) has 6 sub-cluster at 7 (37), ICL=6<>48
cluster 2(N=156) has 4 sub-cluster at 4 (16), ICL=0<>48
Model Refinement takes 0.27 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=12->12 N=9682
EM 12 takes 0 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.3 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=121<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 11 iterations
cluster 2(N=81) has 2 sub-cluster at 2 (5), ICL=110<>25
split 2 into 2 clusters
cluster 1(N=221) has 2 sub-cluster at 2 (6), ICL=68<>25
split 1 into 2 clusters
cluster 1(N=221) has 2 sub-cluster at 2 (6), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 9 iterations
cluster 3(N=95) has 2 sub-cluster at 2 (7), ICL=58<>28
split 3 into 2 clusters
cluster 2(N=45) has 2 sub-cluster at 2 (6), ICL=50<>28
split 2 into 2 clusters
cluster 1(N=406) has 8 sub-cluster at 8 (29), ICL=15<>28
cluster 4(N=63) has 2 sub-cluster at 2 (10), ICL=14<>28
cluster 1(N=406) has 8 sub-cluster at 8 (29), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 8 iterations
cluster 2(N=73) has 4 sub-cluster at 4 (94), ICL=45<>31
split 2 into 4 clusters
cluster 6(N=128) has 2 sub-cluster at 2 (5), ICL=37<>31
split 6 into 2 clusters
cluster 4(N=138) has 5 sub-cluster at 5 (27), ICL=27<>31
cluster 3(N=21) has 2 sub-cluster at 2 (6), ICL=22<>31
cluster 5(N=50) has 3 sub-cluster at 3 (10), ICL=8<>31
cluster 1(N=807) has 6 sub-cluster at 6 (23), ICL=7.5<>31
cluster 1(N=807) has 6 sub-cluster at 6 (23), ICL=0<>31
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->10 N=2420
EM 10 takes 0.017 mins, 25 iterations
cluster 7(N=289) has 2 sub-cluster at 2 (16), ICL=33<>34
cluster 6(N=55) has 4 sub-cluster at 4 (21), ICL=31<>34
cluster 8(N=108) has 5 sub-cluster at 5 (47), ICL=23<>34
cluster 5(N=16) has 2 sub-cluster at 2 (100), ICL=22<>34
cluster 4(N=43) has 2 sub-cluster at 2 (12), ICL=16<>34
cluster 2(N=51) has 4 sub-cluster at 4 (8), ICL=14<>34
cluster 1(N=1593) has 3 sub-cluster at 3 (5), ICL=3.3<>34
cluster 3(N=21) has 2 sub-cluster at 2 (38), ICL=2.5<>34
cluster 9(N=242) has 2 sub-cluster at 2 (22), ICL=1.8<>34
cluster 1(N=1593) has 3 sub-cluster at 3 (5), ICL=0<>34
Model Refinement takes 0.12 mins(max 1: 0.033)
Fit Model 5 of (6/10) K=10->10 N=4841
EM 10 takes 0.017 mins, 26 iterations
cluster 6(N=110) has 2 sub-cluster at 2 (6), ICL=68<>37
split 6 into 2 clusters
cluster 9(N=436) has 3 sub-cluster at 3 (41), ICL=46<>37
split 9 into 3 clusters
cluster 1(N=3227) has 3 sub-cluster at 3 (7), ICL=44<>37
split 1 into 3 clusters
cluster 7(N=557) has 2 sub-cluster at 2 (8), ICL=39<>37
split 7 into 2 clusters
cluster 8(N=201) has 4 sub-cluster at 4 (25), ICL=24<>37
cluster 2(N=93) has 4 sub-cluster at 6 (31), ICL=21<>37
cluster 3(N=33) has 2 sub-cluster at 2 (11), ICL=17<>37
cluster 5(N=28) has 2 sub-cluster at 2 (100), ICL=16<>37
cluster 10(N=32) has 2 sub-cluster at 2 (9), ICL=12<>37
cluster 4(N=161) has 3 sub-cluster at 3 (29), ICL=11<>37
cluster 1(N=3227) has 3 sub-cluster at 3 (7), ICL=0<>37
Model Refinement takes 0.18 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=10->16 N=9682
EM 16 takes 0.05 mins, 21 iterations
cluster 16(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 12(N=391) has 2 sub-cluster at 2 (8), ICL=40<>40
cluster 8(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 11(N=407) has 2 sub-cluster at 2 (6), ICL=20<>40
cluster 5(N=89) has 2 sub-cluster at 2 (12), ICL=19<>40
cluster 4(N=167) has 5 sub-cluster at 7 (50), ICL=18<>40
cluster 7(N=150) has 2 sub-cluster at 3 (19), ICL=16<>40
cluster 6(N=304) has 2 sub-cluster at 2 (19), ICL=9.1<>40
cluster 2(N=307) has 2 sub-cluster at 2 (8), ICL=6.9<>40
cluster 9(N=75) has 3 sub-cluster at 4 (10), ICL=6.7<>40
cluster 13(N=393) has 8 sub-cluster at 8 (38), ICL=1.8<>40
cluster 14(N=28) has 2 sub-cluster at 2 (100), ICL=1.8<>40
cluster 2(N=307) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.33 mins(max 3: 0.067)
Fit Model 7 of (6/10) K=16->16 N=9682
EM 16 takes 0 mins, 3 iterations
cluster 14(N=28) has 2 sub-cluster at 2 (100), ICL=52<>40
split 14 into 2 clusters
cluster 16(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 12(N=391) has 2 sub-cluster at 2 (8), ICL=40<>40
cluster 8(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 11(N=407) has 2 sub-cluster at 2 (6), ICL=20<>40
cluster 5(N=89) has 2 sub-cluster at 2 (12), ICL=19<>40
cluster 4(N=162) has 6 sub-cluster at 7 (39), ICL=18<>40
cluster 7(N=152) has 4 sub-cluster at 6 (27), ICL=13<>40
cluster 2(N=307) has 2 sub-cluster at 2 (8), ICL=6.8<>40
cluster 9(N=75) has 3 sub-cluster at 4 (12), ICL=6.7<>40
cluster 6(N=301) has 5 sub-cluster at 5 (31), ICL=6.5<>40
cluster 13(N=390) has 7 sub-cluster at 8 (31), ICL=4.5<>40
cluster 2(N=307) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.35 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=16->17 N=9682
EM 17 takes 0.12 mins, 50 iterations
cluster 12(N=391) has 2 sub-cluster at 2 (8), ICL=40<>40
cluster 8(N=122) has 3 sub-cluster at 3 (28), ICL=29<>40
cluster 5(N=89) has 5 sub-cluster at 7 (84), ICL=21<>40
cluster 11(N=404) has 2 sub-cluster at 3 (7), ICL=20<>40
cluster 9(N=74) has 5 sub-cluster at 6 (56), ICL=19<>40
cluster 4(N=149) has 6 sub-cluster at 8 (34), ICL=16<>40
cluster 2(N=308) has 8 sub-cluster at 8 (45), ICL=13<>40
cluster 7(N=199) has 3 sub-cluster at 4 (18), ICL=12<>40
cluster 6(N=262) has 5 sub-cluster at 6 (60), ICL=12<>40
cluster 13(N=391) has 6 sub-cluster at 7 (32), ICL=4.3<>40
cluster 2(N=308) has 8 sub-cluster at 8 (45), ICL=0<>40
Model Refinement takes 0.35 mins(max 3: 0.067)
Fit Model 9 of (6/10) K=17->17 N=9682
EM 17 takes 0.1 mins, 50 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.9 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted