Till Soerensen
| Snapshot Date: 2025-08-29 13:45 -0400 (Fri, 29 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 40cdc44 |
| git_last_commit_date: 2025-04-15 10:48:52 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-30 12:08 -0400 (Sat, 30 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4615 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4562 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4541 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1033/2320 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.41.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.41.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-08-29 00:38:34 -0000 (Fri, 29 Aug 2025) |
| EndedAt: 2025-08-29 00:42:27 -0000 (Fri, 29 Aug 2025) |
| EllapsedTime: 233.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=141<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 16 iterations
cluster 2(N=87) has 2 sub-cluster at 2 (6), ICL=117<>30
split 2 into 2 clusters
cluster 1(N=215) has 2 sub-cluster at 2 (6), ICL=27<>30
cluster 1(N=215) has 2 sub-cluster at 2 (6), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->3 N=605
EM 3 takes 0 mins, 10 iterations
cluster 1(N=474) has 2 sub-cluster at 2 (5), ICL=119<>34
split 1 into 2 clusters
cluster 3(N=81) has 3 sub-cluster at 3 (6), ICL=47<>34
split 3 into 3 clusters
cluster 2(N=54) has 2 sub-cluster at 2 (8), ICL=16<>34
cluster 1(N=474) has 2 sub-cluster at 2 (5), ICL=0<>34
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=3->6 N=1210
EM 6 takes 0 mins, 8 iterations
cluster 2(N=120) has 2 sub-cluster at 2 (7), ICL=78<>37
split 2 into 2 clusters
cluster 3(N=107) has 2 sub-cluster at 2 (13), ICL=24<>37
cluster 4(N=69) has 4 sub-cluster at 5 (38), ICL=17<>37
cluster 6(N=85) has 4 sub-cluster at 5 (29), ICL=16<>37
cluster 5(N=41) has 3 sub-cluster at 3 (10), ICL=12<>37
cluster 2(N=120) has 2 sub-cluster at 2 (7), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=6->7 N=2420
EM 7 takes 0 mins, 7 iterations
cluster 2(N=114) has 3 sub-cluster at 3 (14), ICL=72<>41
split 2 into 3 clusters
cluster 4(N=235) has 2 sub-cluster at 2 (6), ICL=59<>41
split 4 into 2 clusters
cluster 6(N=106) has 4 sub-cluster at 4 (30), ICL=22<>41
cluster 3(N=136) has 3 sub-cluster at 3 (19), ICL=19<>41
cluster 7(N=194) has 7 sub-cluster at 8 (27), ICL=17<>41
cluster 5(N=145) has 4 sub-cluster at 7 (42), ICL=13<>41
cluster 2(N=114) has 3 sub-cluster at 3 (14), ICL=0<>41
Model Refinement takes 0.15 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->10 N=4841
EM 10 takes 0 mins, 9 iterations
cluster 7(N=27) has 2 sub-cluster at 2 (100), ICL=57<>45
split 7 into 2 clusters
cluster 5(N=294) has 3 sub-cluster at 3 (9), ICL=29<>45
cluster 3(N=53) has 4 sub-cluster at 4 (14), ICL=21<>45
cluster 9(N=204) has 2 sub-cluster at 2 (8), ICL=21<>45
cluster 6(N=440) has 3 sub-cluster at 3 (14), ICL=15<>45
cluster 4(N=146) has 4 sub-cluster at 6 (42), ICL=12<>45
cluster 10(N=354) has 7 sub-cluster at 8 (42), ICL=10<>45
cluster 2(N=45) has 2 sub-cluster at 3 (10), ICL=3.3<>45
cluster 8(N=344) has 7 sub-cluster at 7 (30), ICL=0.92<>45
cluster 2(N=45) has 2 sub-cluster at 3 (10), ICL=0<>45
Model Refinement takes 0.18 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=10->11 N=9682
EM 11 takes 0 mins, 5 iterations
cluster 5(N=557) has 3 sub-cluster at 3 (11), ICL=66<>48
split 5 into 3 clusters
cluster 10(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 6(N=908) has 3 sub-cluster at 3 (7), ICL=35<>48
cluster 3(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 11(N=636) has 3 sub-cluster at 3 (22), ICL=22<>48
cluster 2(N=78) has 3 sub-cluster at 4 (42), ICL=12<>48
cluster 2(N=78) has 3 sub-cluster at 4 (42), ICL=0<>48
Model Refinement takes 0.25 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=11->13 N=9682
EM 13 takes 0 mins, 5 iterations
cluster 10(N=8) has 2 sub-cluster at 2 (100), ICL=72<>48
split 10 into 2 clusters
cluster 8(N=898) has 2 sub-cluster at 2 (30), ICL=55<>48
split 8 into 2 clusters
cluster 12(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 6(N=178) has 4 sub-cluster at 5 (29), ICL=30<>48
cluster 3(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 7(N=87) has 2 sub-cluster at 2 (6), ICL=18<>48
cluster 2(N=76) has 3 sub-cluster at 4 (57), ICL=16<>48
cluster 5(N=362) has 6 sub-cluster at 7 (25), ICL=12<>48
cluster 4(N=307) has 2 sub-cluster at 2 (7), ICL=6.9<>48
cluster 2(N=76) has 3 sub-cluster at 4 (57), ICL=0<>48
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=13->15 N=9682
EM 14 takes 0.1 mins, 50 iterations
cluster 13(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 3(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 14(N=412) has 2 sub-cluster at 2 (6), ICL=18<>48
cluster 7(N=87) has 2 sub-cluster at 2 (13), ICL=18<>48
cluster 5(N=369) has 8 sub-cluster at 8 (39), ICL=16<>48
cluster 6(N=169) has 6 sub-cluster at 8 (54), ICL=10<>48
cluster 4(N=309) has 2 sub-cluster at 2 (10), ICL=7.5<>48
cluster 2(N=75) has 3 sub-cluster at 4 (12), ICL=4.1<>48
cluster 2(N=75) has 3 sub-cluster at 4 (12), ICL=0<>48
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=14->14 N=9682
EM 14 takes 0.1 mins, 50 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.6 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=156<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=89) has 2 sub-cluster at 2 (7), ICL=113<>25
split 2 into 2 clusters
cluster 1(N=215) has 3 sub-cluster at 3 (24), ICL=32<>25
split 1 into 3 clusters
cluster 1(N=215) has 3 sub-cluster at 3 (24), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 18 iterations
cluster 4(N=106) has 2 sub-cluster at 2 (12), ICL=94<>28
split 4 into 2 clusters
cluster 1(N=367) has 2 sub-cluster at 2 (100), ICL=67<>28
split 1 into 2 clusters
cluster 2(N=111) has 3 sub-cluster at 3 (36), ICL=11<>28
cluster 5(N=69) has 2 sub-cluster at 2 (5), ICL=2.9<>28
cluster 1(N=367) has 2 sub-cluster at 2 (100), ICL=0<>28
Model Refinement takes 0.05 mins(max 2: 0.017)
Fit Model 3 of (6/10) K=5->7 N=1210
EM 7 takes 0 mins, 32 iterations
cluster 5(N=112) has 2 sub-cluster at 2 (8), ICL=65<>31
split 5 into 2 clusters
cluster 4(N=19) has 4 sub-cluster at 4 (97), ICL=53<>31
split 4 into 4 clusters
cluster 7(N=122) has 2 sub-cluster at 2 (13), ICL=34<>31
split 7 into 2 clusters
cluster 6(N=141) has 7 sub-cluster at 7 (26), ICL=25<>31
cluster 1(N=634) has 3 sub-cluster at 3 (11), ICL=0.88<>31
cluster 3(N=428) has 8 sub-cluster at 8 (20), ICL=0.12<>31
cluster 1(N=634) has 3 sub-cluster at 3 (11), ICL=0<>31
Model Refinement takes 0.1 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=7->12 N=2420
EM 9 takes 0 mins, 12 iterations
cluster 2(N=9) has 2 sub-cluster at 2 (100), ICL=58<>34
split 2 into 2 clusters
cluster 7(N=286) has 2 sub-cluster at 2 (7), ICL=37<>34
split 7 into 2 clusters
cluster 3(N=854) has 2 sub-cluster at 2 (5), ICL=33<>34
cluster 6(N=85) has 6 sub-cluster at 6 (28), ICL=25<>34
cluster 5(N=153) has 3 sub-cluster at 3 (12), ICL=19<>34
cluster 9(N=231) has 7 sub-cluster at 7 (51), ICL=16<>34
cluster 4(N=36) has 3 sub-cluster at 3 (9), ICL=15<>34
cluster 8(N=24) has 2 sub-cluster at 2 (17), ICL=14<>34
cluster 2(N=9) has 2 sub-cluster at 2 (100), ICL=0<>34
Model Refinement takes 0.17 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=9->11 N=4841
EM 10 takes 0.017 mins, 11 iterations
cluster 10(N=448) has 3 sub-cluster at 3 (36), ICL=31<>37
cluster 5(N=264) has 3 sub-cluster at 3 (14), ICL=30<>37
cluster 3(N=1724) has 4 sub-cluster at 4 (32), ICL=27<>37
cluster 6(N=197) has 3 sub-cluster at 3 (21), ICL=21<>37
cluster 4(N=58) has 3 sub-cluster at 3 (15), ICL=19<>37
cluster 9(N=30) has 2 sub-cluster at 2 (7), ICL=13<>37
cluster 2(N=34) has 2 sub-cluster at 2 (6), ICL=12<>37
cluster 7(N=216) has 8 sub-cluster at 8 (15), ICL=10<>37
cluster 8(N=471) has 5 sub-cluster at 5 (25), ICL=0.28<>37
cluster 2(N=34) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.23 mins(max 3: 0.067)
Fit Model 6 of (6/10) K=10->10 N=9682
EM 10 takes 0.017 mins, 10 iterations
cluster 5(N=561) has 3 sub-cluster at 3 (8), ICL=58<>40
split 5 into 3 clusters
cluster 10(N=916) has 3 sub-cluster at 3 (10), ICL=56<>40
split 10 into 3 clusters
cluster 3(N=3376) has 3 sub-cluster at 3 (13), ICL=51<>40
split 3 into 3 clusters
cluster 6(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40
split 6 into 2 clusters
cluster 4(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 7(N=401) has 2 sub-cluster at 2 (6), ICL=20<>40
cluster 2(N=75) has 3 sub-cluster at 4 (33), ICL=13<>40
cluster 1(N=5139) has 3 sub-cluster at 3 (8), ICL=1.2<>40
cluster 1(N=5139) has 3 sub-cluster at 3 (8), ICL=0<>40
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=10->17 N=9682
EM 17 takes 0.033 mins, 19 iterations
cluster 6(N=124) has 2 sub-cluster at 2 (7), ICL=32<>40
cluster 7(N=252) has 4 sub-cluster at 4 (28), ICL=21<>40
cluster 12(N=402) has 2 sub-cluster at 2 (6), ICL=21<>40
cluster 10(N=215) has 6 sub-cluster at 6 (19), ICL=17<>40
cluster 2(N=74) has 3 sub-cluster at 4 (45), ICL=16<>40
cluster 9(N=121) has 6 sub-cluster at 7 (35), ICL=16<>40
cluster 4(N=326) has 2 sub-cluster at 2 (9), ICL=9.2<>40
cluster 8(N=274) has 8 sub-cluster at 8 (77), ICL=8.9<>40
cluster 17(N=54) has 2 sub-cluster at 2 (100), ICL=8.3<>40
cluster 11(N=224) has 6 sub-cluster at 8 (33), ICL=7.3<>40
cluster 2(N=74) has 3 sub-cluster at 4 (45), ICL=0<>40
Model Refinement takes 0.4 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=17->17 N=9682
EM 17 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.4 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted