Ilaria Billato
| Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026) |
| git_url: https://git.bioconductor.org/packages/imageFeatureTCGA |
| git_branch: devel |
| git_last_commit: fbc4a75 |
| git_last_commit_date: 2026-04-28 09:07:05 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1048/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| imageFeatureTCGA 1.1.0 (landing page) Ilaria Billato
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| See other builds for imageFeatureTCGA in R Universe. | ||||||||||||||
|
To the developers/maintainers of the imageFeatureTCGA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/imageFeatureTCGA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: imageFeatureTCGA |
| Version: 1.1.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:imageFeatureTCGA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings imageFeatureTCGA_1.1.0.tar.gz |
| StartedAt: 2026-05-05 11:15:05 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 11:27:36 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 751.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: imageFeatureTCGA.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:imageFeatureTCGA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings imageFeatureTCGA_1.1.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.24-bioc/meat/imageFeatureTCGA.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘imageFeatureTCGA/DESCRIPTION’ ... OK
* this is package ‘imageFeatureTCGA’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘imageFeatureTCGA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ProvGigaList 26.918 7.191 214.726
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘tinytest.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
imageFeatureTCGA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL imageFeatureTCGA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘imageFeatureTCGA’ ... ** this is package ‘imageFeatureTCGA’ version ‘1.1.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (imageFeatureTCGA)
imageFeatureTCGA.Rcheck/tests/tinytest.Rout
R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ tinytest::test_package("imageFeatureTCGA")
+ }
test-HoverNet.R............... 0 tests
test-HoverNet.R............... 0 tests
test-HoverNet.R............... 1 tests [0;32mOK[0m
test-HoverNet.R............... 2 tests [0;32mOK[0m
test-HoverNet.R............... 2 tests [0;32mOK[0m
test-HoverNet.R............... 3 tests [0;32mOK[0m
test-HoverNet.R............... 4 tests [0;32mOK[0m
test-HoverNet.R............... 4 tests [0;32mOK[0m
test-HoverNet.R............... 5 tests [0;32mOK[0m
test-HoverNet.R............... 5 tests [0;32mOK[0m
test-HoverNet.R............... 6 tests [0;32mOK[0m
test-HoverNet.R............... 7 tests [0;32mOK[0m
test-HoverNet.R............... 7 tests [0;32mOK[0m
test-HoverNet.R............... 7 tests [0;32mOK[0m
test-HoverNet.R............... 8 tests [0;32mOK[0m [0;34m53.1s[0m
test-ProvGiga.R............... 0 tests
test-ProvGiga.R............... 0 tests
test-ProvGiga.R............... 1 tests [0;32mOK[0m
test-ProvGiga.R............... 2 tests [0;32mOK[0m
test-ProvGiga.R............... 2 tests [0;32mOK[0m
test-ProvGiga.R............... 3 tests [0;32mOK[0m
test-ProvGiga.R............... 4 tests [0;32mOK[0m
test-ProvGiga.R............... 5 tests [0;32mOK[0m
test-ProvGiga.R............... 5 tests [0;32mOK[0m
test-ProvGiga.R............... 6 tests [0;32mOK[0m [0;34m0.3s[0m
Download status: 0 done; 1 in progress (0 b/s). Total size: 5.32 Kb (0%)...
Download status: 0 done; 1 in progress (168.91 Kb/s). Total size: 2.65 Mb (9%)...
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Download status: 1 done; 0 in progress. Total size: 30.60 Mb (100%)... done!
test-ProvGigaList.R........... 0 tests
test-ProvGigaList.R........... 0 tests
test-ProvGigaList.R........... 1 tests [0;32mOK[0m
test-ProvGigaList.R........... 2 tests [0;32mOK[0m
test-ProvGigaList.R........... 3 tests [0;32mOK[0m
test-ProvGigaList.R........... 4 tests [0;32mOK[0m
test-ProvGigaList.R........... 5 tests [0;32mOK[0m
test-ProvGigaList.R........... 5 tests [0;32mOK[0m
test-ProvGigaList.R........... 6 tests [0;32mOK[0m
test-ProvGigaList.R........... 7 tests [0;32mOK[0m
test-ProvGigaList.R........... 8 tests [0;32mOK[0m
test-ProvGigaList.R........... 8 tests [0;32mOK[0m
test-ProvGigaList.R........... 8 tests [0;32mOK[0m
test-ProvGigaList.R........... 8 tests [0;32mOK[0m
test-ProvGigaList.R........... 9 tests [0;32mOK[0m
test-ProvGigaList.R........... 10 tests [0;32mOK[0m
test-ProvGigaList.R........... 11 tests [0;32mOK[0m [0;34m1.1s[0m
Download status: 0 done; 1 in progress (0 b/s). Total size: 10.58 Kb (0%)...
Download status: 0 done; 1 in progress (413.54 Kb/s). Total size: 2.50 Mb (8%)...
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Download status: 1 done; 0 in progress. Total size: 30.60 Mb (100%)... done!
test-getCatalog.R............. 0 tests
test-getCatalog.R............. 1 tests [0;32mOK[0m
test-getCatalog.R............. 2 tests [0;32mOK[0m
test-getCatalog.R............. 3 tests [0;32mOK[0m
Download status: 0 done; 1 in progress (0 b/s). Total size: 11.90 Kb (0%)...
Download status: 0 done; 1 in progress (452.39 Kb/s). Total size: 2.56 Mb (8%)...
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Download status: 1 done; 0 in progress. Total size: 30.60 Mb (100%)... done!
test-getCatalog.R............. 3 tests [0;32mOK[0m
test-getCatalog.R............. 4 tests [0;32mOK[0m
Download status: 0 done; 1 in progress (0 b/s). Total size: 16.00 Kb (0%)...
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Download status: 0 done; 1 in progress (540.66 Kb/s). Total size: 29.23 Mb (96%)...
Download status: 1 done; 0 in progress. Total size: 30.60 Mb (100%)... done!
test-getCatalog.R............. 4 tests [0;32mOK[0m
test-getCatalog.R............. 5 tests [0;32mOK[0m
test-getCatalog.R............. 5 tests [0;32mOK[0m
test-getCatalog.R............. 6 tests [0;32mOK[0m
test-getCatalog.R............. 7 tests [0;32mOK[0m
test-getCatalog.R............. 8 tests [0;32mOK[0m [0;34m3.1s[0m
test-linkTCGA.R............... 1 tests [0;32mOK[0m
test-linkTCGA.R............... 2 tests [0;32mOK[0m
test-linkTCGA.R............... 3 tests [0;32mOK[0m
test-linkTCGA.R............... 4 tests [0;32mOK[0m
test-linkTCGA.R............... 5 tests [0;32mOK[0m
test-linkTCGA.R............... 5 tests [0;32mOK[0m
test-linkTCGA.R............... 5 tests [0;32mOK[0m
test-linkTCGA.R............... 6 tests [0;32mOK[0m
test-linkTCGA.R............... 7 tests [0;32mOK[0m
test-linkTCGA.R............... 8 tests [0;32mOK[0m
test-linkTCGA.R............... 9 tests [0;32mOK[0m
test-linkTCGA.R............... 9 tests [0;32mOK[0m
test-linkTCGA.R............... 9 tests [0;32mOK[0m
test-linkTCGA.R............... 10 tests [0;32mOK[0m
test-linkTCGA.R............... 11 tests [0;32mOK[0m
test-linkTCGA.R............... 12 tests [0;32mOK[0m
test-linkTCGA.R............... 13 tests [0;32mOK[0m
test-linkTCGA.R............... 14 tests [0;32mOK[0m
test-linkTCGA.R............... 15 tests [0;32mOK[0m
test-linkTCGA.R............... 16 tests [0;32mOK[0m
test-linkTCGA.R............... 17 tests [0;32mOK[0m [0;36m59ms[0m
test-utils.R.................. 1 tests [0;32mOK[0m
test-utils.R.................. 2 tests [0;32mOK[0m
test-utils.R.................. 3 tests [0;32mOK[0m
test-utils.R.................. 4 tests [0;32mOK[0m
test-utils.R.................. 5 tests [0;32mOK[0m
test-utils.R.................. 6 tests [0;32mOK[0m
test-utils.R.................. 7 tests [0;32mOK[0m
test-utils.R.................. 7 tests [0;32mOK[0m
test-utils.R.................. 7 tests [0;32mOK[0m
test-utils.R.................. 8 tests [0;32mOK[0m
test-utils.R.................. 9 tests [0;32mOK[0m
test-utils.R.................. 10 tests [0;32mOK[0m
test-utils.R.................. 10 tests [0;32mOK[0m
test-utils.R.................. 10 tests [0;32mOK[0m
test-utils.R.................. 10 tests [0;32mOK[0m
test-utils.R.................. 11 tests [0;32mOK[0m
test-utils.R.................. 12 tests [0;32mOK[0m
test-utils.R.................. 13 tests [0;32mOK[0m
test-utils.R.................. 14 tests [0;32mOK[0m
test-utils.R.................. 15 tests [0;32mOK[0m
test-utils.R.................. 16 tests [0;32mOK[0m
test-utils.R.................. 16 tests [0;32mOK[0m
test-utils.R.................. 16 tests [0;32mOK[0m
test-utils.R.................. 16 tests [0;32mOK[0m
test-utils.R.................. 16 tests [0;32mOK[0m
test-utils.R.................. 17 tests [0;32mOK[0m
test-utils.R.................. 18 tests [0;32mOK[0m
test-utils.R.................. 19 tests [0;32mOK[0m
test-utils.R.................. 20 tests [0;32mOK[0m
test-utils.R.................. 21 tests [0;32mOK[0m
test-utils.R.................. 21 tests [0;32mOK[0m
test-utils.R.................. 22 tests [0;32mOK[0m
test-utils.R.................. 23 tests [0;32mOK[0m [0;36m42ms[0m
All ok, 73 results (5m 4.5s)
>
> proc.time()
user system elapsed
74.262 4.629 314.818
imageFeatureTCGA.Rcheck/imageFeatureTCGA-Ex.timings
| name | user | system | elapsed | |
| HoverNet | 2.354 | 0.139 | 2.502 | |
| ProvGiga | 0.001 | 0.000 | 0.001 | |
| ProvGigaList | 26.918 | 7.191 | 214.726 | |
| embeddingStack | 0.000 | 0.000 | 0.001 | |
| getCatalog | 0.000 | 0.000 | 0.001 | |
| linkTCGA | 0 | 0 | 0 | |