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This page was generated on 2025-06-08 12:12 -0400 (Sun, 08 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4795
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4536
lconwaymacOS 12.7.1 Montereyx86_644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4574
kjohnson3macOS 13.7.1 Venturaarm644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4513
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4479
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1015/2309HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
igblastr 0.99.5  (landing page)
Hervé Pagès
Snapshot Date: 2025-06-06 13:25 -0400 (Fri, 06 Jun 2025)
git_url: https://git.bioconductor.org/packages/igblastr
git_branch: devel
git_last_commit: 0bc7ed7
git_last_commit_date: 2025-05-22 22:17:47 -0400 (Thu, 22 May 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for igblastr on taishan

To the developers/maintainers of the igblastr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/igblastr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: igblastr
Version: 0.99.5
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr
StartedAt: 2025-06-06 01:04:36 -0000 (Fri, 06 Jun 2025)
EndedAt: 2025-06-06 01:05:05 -0000 (Fri, 06 Jun 2025)
EllapsedTime: 29.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr
###
##############################################################################
##############################################################################


* checking for file ‘igblastr/DESCRIPTION’ ... OK
* preparing ‘igblastr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘igblastr_overview.Rmd’ using rmarkdown

Quitting from igblastr_overview.Rmd:110-113 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.stop_on_no_precompiled_ncbi_igblast()`:
! No pre-compiled IgBLAST program available at
  ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ for Linux-aarch64.
  If there's an existing IgBLAST installation on your machine, please set
  environment variable IGBLAST_ROOT to point to it. Otherwise, please perform
  your own installation of IgBLAST e.g. by downloading and compiling the latest
  source tarball from
  ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ (note that
  compilation can take between 45 min and 1 hour!), then point IGBLAST_ROOT to
  it. See '?IGBLAST_ROOT' for more information.
---
Backtrace:
    ▆
 1. └─igblastr::install_igblast()
 2.   └─igblastr:::.get_precompiled_ncbi_igblast_name(ftp_dir, OS_arch)
 3.     └─igblastr:::.stop_on_no_precompiled_ncbi_igblast(ftp_dir, OS_arch)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'igblastr_overview.Rmd' failed with diagnostics:
No pre-compiled IgBLAST program available at
  ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ for Linux-aarch64.
  If there's an existing IgBLAST installation on your machine, please set
  environment variable IGBLAST_ROOT to point to it. Otherwise, please perform
  your own installation of IgBLAST e.g. by downloading and compiling the latest
  source tarball from
  ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ (note that
  compilation can take between 45 min and 1 hour!), then point IGBLAST_ROOT to
  it. See '?IGBLAST_ROOT' for more information.
--- failed re-building ‘igblastr_overview.Rmd’

SUMMARY: processing the following file failed:
  ‘igblastr_overview.Rmd’

Error: Vignette re-building failed.
Execution halted