| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-10-31 08:34 -0400 (Fri, 31 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4428 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1067/2321 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| iSEEfier 1.7.0 (landing page) Najla Abassi
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
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To the developers/maintainers of the iSEEfier package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iSEEfier.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: iSEEfier |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data iSEEfier |
| StartedAt: 2025-10-30 17:37:21 -0400 (Thu, 30 Oct 2025) |
| EndedAt: 2025-10-30 17:38:31 -0400 (Thu, 30 Oct 2025) |
| EllapsedTime: 70.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data iSEEfier
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* checking for file ‘iSEEfier/DESCRIPTION’ ... OK
* preparing ‘iSEEfier’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘iSEEfier_userguide.Rmd’ using rmarkdown
Quitting from iSEEfier_userguide.Rmd:203-213 [initial2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `iSEEnrich()`:
! Please check the value of the provided orgDb package (the package needs to be installed)...If you want to install it run the following line:
BiocManager::install('org.Mm.eg.db')
---
Backtrace:
▆
1. └─iSEEfier::iSEEnrich(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'iSEEfier_userguide.Rmd' failed with diagnostics:
Please check the value of the provided orgDb package (the package needs to be installed)...If you want to install it run the following line:
BiocManager::install('org.Mm.eg.db')
--- failed re-building ‘iSEEfier_userguide.Rmd’
SUMMARY: processing the following file failed:
‘iSEEfier_userguide.Rmd’
Error: Vignette re-building failed.
Execution halted