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This page was generated on 2025-09-02 12:04 -0400 (Tue, 02 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4615
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4562
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4541
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 861/2320HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ggkegg 1.7.0  (landing page)
Noriaki Sato
Snapshot Date: 2025-09-01 13:45 -0400 (Mon, 01 Sep 2025)
git_url: https://git.bioconductor.org/packages/ggkegg
git_branch: devel
git_last_commit: 705ab56
git_last_commit_date: 2025-04-15 13:19:46 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    NA  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for ggkegg on taishan

To the developers/maintainers of the ggkegg package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ggkegg.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: ggkegg
Version: 1.7.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggkegg
StartedAt: 2025-09-01 23:59:59 -0000 (Mon, 01 Sep 2025)
EndedAt: 2025-09-02 00:02:52 -0000 (Tue, 02 Sep 2025)
EllapsedTime: 173.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggkegg
###
##############################################################################
##############################################################################


* checking for file ‘ggkegg/DESCRIPTION’ ... OK
* preparing ‘ggkegg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘usage_of_ggkegg.Rmd’ using rmarkdown
trying URL 'https://rest.kegg.jp/get/bpsp00270/kgml'

Quitting from usage_of_ggkegg.Rmd:193-196 [ggkegg]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://rest.kegg.jp/get/bpsp00270/kgml'
---
Backtrace:
    ▆
 1. └─ggkegg::ggkegg("bpsp00270")
 2.   └─ggkegg::pathway(...)
 3.     └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'usage_of_ggkegg.Rmd' failed with diagnostics:
cannot open URL 'https://rest.kegg.jp/get/bpsp00270/kgml'
--- failed re-building ‘usage_of_ggkegg.Rmd’

SUMMARY: processing the following file failed:
  ‘usage_of_ggkegg.Rmd’

Error: Vignette re-building failed.
Execution halted