| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-09-20 12:06 -0400 (Sat, 20 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4814 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4603 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4547 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4553 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 864/2333 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ggbio 1.57.1 (landing page) Michael Lawrence
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the ggbio package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ggbio.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ggbio |
| Version: 1.57.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ggbio |
| StartedAt: 2025-09-19 16:30:40 -0400 (Fri, 19 Sep 2025) |
| EndedAt: 2025-09-19 16:32:21 -0400 (Fri, 19 Sep 2025) |
| EllapsedTime: 101.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ggbio
###
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* checking for file ‘ggbio/DESCRIPTION’ ... OK
* preparing ‘ggbio’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ggbio.Rnw’ using Sweave
--- finished re-building ‘ggbio.Rnw’
cp realvignettes/*.Rnw .
/Library/Frameworks/R.framework/Resources/bin/Rscript -e "library(knitr); knit2pdf('ggbio.Rnw')"
processing file: ggbio.Rnw
1/125
2/125 [style-knitr]
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4/125 [setup]
5/125
6/125 [citation]
7/125
8/125 [unnamed-chunk-1]
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60/125 [processing]
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Error in `autoplot()`:
! Objects of class <ggplot2::ggplot> are not supported by autoplot.
i Have you loaded the required package?
Backtrace:
x
1. +-ggbio::plotRangesLinkedToData(...)
2. \-ggbio::plotRangesLinkedToData(...)
3. \-ggbio (local) .local(data, ...)
4. +-BiocGenerics::do.call(tracks, args.tracks)
5. +-base::do.call(tracks, args.tracks)
6. \-ggbio (local) `<fn>`(`<ggplt2::>`, `<ggplt2::>`, `<GGbio>`, `<GGbio>`, heights = `<simplUnt>`)
7. \-ggbio:::genPlots(dots)
8. +-BiocGenerics::lapply(...)
9. \-base::lapply(...)
10. \-ggbio (local) FUN(X[[i]], ...)
11. +-ggplot2::autoplot(x)
12. +-ggplot2::autoplot(x)
13. \-ggplot2:::autoplot.default(x)
14. \-cli::cli_abort(...)
15. \-rlang::abort(...)
Quitting from ggbio.Rnw:933-936 [unnamed-chunk-42]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
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Execution halted
make: *** [ggbio.pdf] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) :
running 'make' failed
Execution halted