Itamar José Guimarães Nunes
| Snapshot Date: 2025-09-19 13:45 -0400 (Fri, 19 Sep 2025) |
| git_url: https://git.bioconductor.org/packages/geva |
| git_branch: devel |
| git_last_commit: 2884bb2 |
| git_last_commit_date: 2025-04-15 12:22:56 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-09-20 12:06 -0400 (Sat, 20 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4814 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4603 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4547 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4553 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 860/2333 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| geva 1.17.0 (landing page) Itamar José Guimarães Nunes
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the geva package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/geva.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: geva |
| Version: 1.17.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data geva |
| StartedAt: 2025-09-19 16:30:18 -0400 (Fri, 19 Sep 2025) |
| EndedAt: 2025-09-19 16:30:56 -0400 (Fri, 19 Sep 2025) |
| EllapsedTime: 38.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data geva
###
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* checking for file ‘geva/DESCRIPTION’ ... OK
* preparing ‘geva’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘geva.Rmd’ using rmarkdown
Warning in Sys.setlocale("LC_TIME", "English_United States") :
OS reports request to set locale to "English_United States" cannot be honored
2025-09-19 16:30:22.323 R[35482:276775226] XType: Using static font registry.
INFO - This is Biber 2.19
INFO - Logfile is 'geva.blg'
INFO - Reading 'geva.bcf'
INFO - Found 4 citekeys in bib section 0
INFO - Processing section 0
INFO - Looking for bibtex file 'references.bib' for section 0
INFO - LaTeX decoding ...
INFO - Found BibTeX data source 'references.bib'
Warning: LaTeX Warning: Citation 'smyth2005limma' on page 2 undefined on input line 164.
Warning: LaTeX Warning: Citation 'love2014moderated' on page 2 undefined on input line 1
Warning: 65.
Warning: LaTeX Warning: Citation 'nunes2018gene' on page 2 undefined on input line 168.
Warning: LaTeX Warning: Citation 'kallio2011chipster' on page 2 undefined on input line
Warning: 169.
Warning: Package longtable Warning: Column widths have changed
Warning: (longtable) in table 1 on input line 881.
Warning: Package longtable Warning: Column widths have changed
Warning: (longtable) in table 2 on input line 920.
Warning: LaTeX Warning: Empty bibliography on input line 970.
Warning: Package longtable Warning: Table widths have changed. Rerun LaTeX.
Warning: LaTeX Warning: There were undefined references.
Warning: LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
Warning: Package biblatex Warning: Please (re)run Biber on the file:
Warning: (biblatex) geva
Warning: (biblatex) and rerun LaTeX afterwards.
Error: processing vignette 'geva.Rmd' failed with diagnostics:
Failed to build the bibliography via biber
--- failed re-building ‘geva.Rmd’
SUMMARY: processing the following file failed:
‘geva.Rmd’
Error: Vignette re-building failed.
Execution halted