Mauro Castro
| Snapshot Date: 2025-09-10 13:45 -0400 (Wed, 10 Sep 2025) |
| git_url: https://git.bioconductor.org/packages/geneplast |
| git_branch: devel |
| git_last_commit: 4b2cfb4 |
| git_last_commit_date: 2025-04-15 11:02:37 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-09-11 12:04 -0400 (Thu, 11 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4539 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4474 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4519 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4544 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 810/2322 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| geneplast 1.35.0 (landing page) Mauro Castro
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the geneplast package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/geneplast.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: geneplast |
| Version: 1.35.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data geneplast |
| StartedAt: 2025-09-10 17:57:14 -0400 (Wed, 10 Sep 2025) |
| EndedAt: 2025-09-10 17:57:47 -0400 (Wed, 10 Sep 2025) |
| EllapsedTime: 33.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data geneplast
###
##############################################################################
##############################################################################
* checking for file ‘geneplast/DESCRIPTION’ ... OK
* preparing ‘geneplast’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘geneplast.Rmd’ using rmarkdown
--- finished re-building ‘geneplast.Rmd’
--- re-building ‘geneplast_Trefflich2019.Rmd’ using rmarkdown
Quitting from geneplast_Trefflich2019.Rmd:29-38 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'Fletcher2013b'
---
Backtrace:
▆
1. └─base::library(Fletcher2013b)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'geneplast_Trefflich2019.Rmd' failed with diagnostics:
there is no package called 'Fletcher2013b'
--- failed re-building ‘geneplast_Trefflich2019.Rmd’
SUMMARY: processing the following file failed:
‘geneplast_Trefflich2019.Rmd’
Error: Vignette re-building failed.
Execution halted