Multiple platform build/check report for BioC 3.23 - BUILD results for epiSeeker on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4857
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences"	4060
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for epiSeeker on kjohnson3

To the developers/maintainers of the epiSeeker package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epiSeeker.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: epiSeeker

Version: 0.99.15

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epiSeeker

StartedAt: 2026-03-17 15:58:02 -0400 (Tue, 17 Mar 2026)

EndedAt: 2026-03-17 15:58:37 -0400 (Tue, 17 Mar 2026)

EllapsedTime: 35.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epiSeeker
###
##############################################################################
##############################################################################


* checking for file ‘epiSeeker/DESCRIPTION’ ... OK
* preparing ‘epiSeeker’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘epiSeeker.rmd’ using rmarkdown
2026-03-17 15:58:33.358 R[28751:173955847] XType: Using static font registry.
Failed with error:  'there is no package called 'TFBSTools''

Quitting from epiSeeker.rmd:296-318 [plot-motif-prof]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': unable to load required package 'TFBSTools'
---
Backtrace:
     ▆
  1. ├─epiSeeker::getMotifMatrix(...)
  2. │ ├─BiocGenerics::as.data.frame(...)
  3. │ └─universalmotif::scan_sequences(pwm, regionSeqs, respect.strand = TRUE)
  4. │   └─universalmotif::convert_motifs(motifs)
  5. │     └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
  6. │       └─methods:::.findInheritedMethods(classes, fdef, mtable)
  7. │         └─methods::getClass(cl1, where = where, .Force = TRUE)
  8. │           └─methods::getClassDef(Class, where)
  9. │             └─methods:::.requirePackage(package)
 10. │               └─base::stop(...)
 11. └─base::.handleSimpleError(...)
 12.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'epiSeeker.rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': unable to load required package 'TFBSTools'
--- failed re-building ‘epiSeeker.rmd’

SUMMARY: processing the following file failed:
  ‘epiSeeker.rmd’

Error: Vignette re-building failed.
Execution halted