| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-23 11:35 -0400 (Sat, 23 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4937 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4639 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 577/2379 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| destiny 3.27.0 (landing page) Philipp Angerer
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | ||||||||||
| See other builds for destiny in R Universe. | ||||||||||||||
|
To the developers/maintainers of the destiny package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/destiny.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: destiny |
| Version: 3.27.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 destiny |
| StartedAt: 2026-05-22 17:19:35 -0400 (Fri, 22 May 2026) |
| EndedAt: 2026-05-22 17:26:21 -0400 (Fri, 22 May 2026) |
| EllapsedTime: 405.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 destiny
###
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* checking for file ‘destiny/DESCRIPTION’ ... OK
* preparing ‘destiny’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘DPT.Rmd’ using rmarkdown
--- finished re-building ‘DPT.Rmd’
--- re-building ‘Diffusion-Map-recap.Rmd’ using rmarkdown
--- finished re-building ‘Diffusion-Map-recap.Rmd’
--- re-building ‘Diffusion-Maps.Rmd’ using rmarkdown
--- finished re-building ‘Diffusion-Maps.Rmd’
--- re-building ‘Gene-Relevance.Rmd’ using rmarkdown
--- finished re-building ‘Gene-Relevance.Rmd’
--- re-building ‘Global-Sigma.Rmd’ using rmarkdown
Quitting from Global-Sigma.Rmd:24-27 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! [conflicted] data found in 2 packages.
Either pick the one you want with `::`:
• BiocGenerics::data
• utils::data
Or declare a preference with `conflicts_prefer()`:
• `conflicts_prefer(BiocGenerics::data)`
• `conflicts_prefer(utils::data)`
---
Backtrace:
▆
1. └─conflicted (local) `<fn>`()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Global-Sigma.Rmd' failed with diagnostics:
[conflicted] data found in 2 packages.
Either pick the one you want with `::`:
• BiocGenerics::data
• utils::data
Or declare a preference with `conflicts_prefer()`:
• `conflicts_prefer(BiocGenerics::data)`
• `conflicts_prefer(utils::data)`
--- failed re-building ‘Global-Sigma.Rmd’
--- re-building ‘tidyverse.Rmd’ using rmarkdown
Quitting from tidyverse.Rmd:53-55 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! [conflicted] data found in 2 packages.
Either pick the one you want with `::`:
• BiocGenerics::data
• utils::data
Or declare a preference with `conflicts_prefer()`:
• `conflicts_prefer(BiocGenerics::data)`
• `conflicts_prefer(utils::data)`
---
Backtrace:
▆
1. └─conflicted (local) `<fn>`()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tidyverse.Rmd' failed with diagnostics:
[conflicted] data found in 2 packages.
Either pick the one you want with `::`:
• BiocGenerics::data
• utils::data
Or declare a preference with `conflicts_prefer()`:
• `conflicts_prefer(BiocGenerics::data)`
• `conflicts_prefer(utils::data)`
--- failed re-building ‘tidyverse.Rmd’
SUMMARY: processing the following files failed:
‘Global-Sigma.Rmd’ ‘tidyverse.Rmd’
Error: Vignette re-building failed.
Execution halted