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This page was generated on 2025-08-30 12:07 -0400 (Sat, 30 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4615
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4562
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4541
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 553/2320HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
densvis 1.19.0  (landing page)
Alan O'Callaghan
Snapshot Date: 2025-08-29 13:45 -0400 (Fri, 29 Aug 2025)
git_url: https://git.bioconductor.org/packages/densvis
git_branch: devel
git_last_commit: 7d2a35c
git_last_commit_date: 2025-07-17 04:53:14 -0400 (Thu, 17 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


BUILD results for densvis on kjohnson3

To the developers/maintainers of the densvis package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/densvis.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: densvis
Version: 1.19.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data densvis
StartedAt: 2025-08-29 16:08:27 -0400 (Fri, 29 Aug 2025)
EndedAt: 2025-08-29 16:08:51 -0400 (Fri, 29 Aug 2025)
EllapsedTime: 23.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data densvis
###
##############################################################################
##############################################################################


* checking for file ‘densvis/DESCRIPTION’ ... OK
* preparing ‘densvis’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘densvis.Rmd’ using rmarkdown
2025-08-29 16:08:35.834 R[98319:121351795] XType: Using static font registry.

Quitting from densvis.Rmd:122-130 [run-densmap]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `py_module_import()`:
! OSError: Could not find/load shared object file
Run `reticulate::py_last_error()` for details.
---
Backtrace:
    ▆
 1. └─densvis::densmap(data[, 1:2], dens_frac = 0.5, dens_lambda = 0.5)
 2.   └─densvis::umap(..., densmap = TRUE)
 3.     └─basilisk::basiliskRun(...)
 4.       └─densvis (local) fun(...)
 5.         └─reticulate::import("umap")
 6.           └─reticulate:::py_module_import(module, convert = convert)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'densvis.Rmd' failed with diagnostics:
OSError: Could not find/load shared object file
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘densvis.Rmd’

SUMMARY: processing the following file failed:
  ‘densvis.Rmd’

Error: Vignette re-building failed.
Execution halted