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This page was generated on 2026-04-13 11:35 -0400 (Mon, 13 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4919
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4632
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 501/2390HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cyanoFilter 1.19.0  (landing page)
Oluwafemi Olusoji
Snapshot Date: 2026-04-12 13:40 -0400 (Sun, 12 Apr 2026)
git_url: https://git.bioconductor.org/packages/cyanoFilter
git_branch: devel
git_last_commit: 8ca42f1
git_last_commit_date: 2025-10-29 11:07:55 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for cyanoFilter in R Universe.


CHECK results for cyanoFilter on kjohnson3

To the developers/maintainers of the cyanoFilter package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: cyanoFilter
Version: 1.19.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.19.0.tar.gz
StartedAt: 2026-04-12 19:11:48 -0400 (Sun, 12 Apr 2026)
EndedAt: 2026-04-12 19:12:32 -0400 (Sun, 12 Apr 2026)
EllapsedTime: 43.5 seconds
RetCode: 0
Status:   OK  
CheckDir: cyanoFilter.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.19.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.6.0 alpha (2026-04-08 r89818)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-12 23:11:48 UTC
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

cyanoFilter.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘cyanoFilter’ ...
** this is package ‘cyanoFilter’ version ‘1.19.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cyanoFilter)

Tests output


Example timings

cyanoFilter.Rcheck/cyanoFilter-Ex.timings

nameusersystemelapsed
MarginEvents0.3290.0270.364
PhytoFilter0.2280.0130.246
PhytopFilter0.2330.0120.246
accTest0.1390.0070.148
accuracy0.1280.0080.136
cellmargin0.2200.0100.242
clusterExtract0.2910.0190.317
clusterExtractp0.2670.0100.282
debrisNc0.1300.0150.149
fullFlowframe-MarginEvents-method0.1120.0070.120
fullFlowframe-PhytopFilter-method0.2170.0110.232
fullFlowframe0.2310.0090.244
gateFunc3.8350.2773.425
ggpairsDens1.6010.0361.645
ggplotDens0.2730.0090.288
ggplotDens20.4700.0230.499
goodfcs0.0140.0020.016
is.DebrisFilter000
is.MarginEvents000
is.PhytopFilter000
is.flowFrame000
is.flowSet000
lnTrans0.0710.0050.077
newFlowframe0.0690.0150.085
nona0.0350.0020.037
noneg0.0520.0020.054
oneDgate0.0730.0160.091
pairsPlot0.7180.0390.770
pigmentGate0.0960.0140.113
reducedFlowframe-MarginEvents-method0.1010.0050.107
reducedFlowframe0.1020.0050.108
retain0.0070.0010.008
rowNumbers0.0720.0160.092
summaries-DebrisFilter-method0.1040.0050.108
summaries-MarginEvents-method0.1200.0060.127
summaries-PhytopFilter-method0.2000.0070.208
summaries0.1040.0050.110