Back to Build/check report for BioC 3.24:   simplified   long
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This page was generated on 2026-04-29 10:00 -0400 (Wed, 29 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4843
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 391/2366HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cmapR 1.25.0  (landing page)
Ted Natoli
Snapshot Date: 2026-04-28 14:49 -0400 (Tue, 28 Apr 2026)
git_url: https://git.bioconductor.org/packages/cmapR
git_branch: devel
git_last_commit: 031c9df
git_last_commit_date: 2026-04-28 08:52:08 -0400 (Tue, 28 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
See other builds for cmapR in R Universe.

BUILD results for cmapR on nebbiolo2

To the developers/maintainers of the cmapR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cmapR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: cmapR
Version: 1.25.0
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 cmapR
StartedAt: 2026-04-28 17:53:47 -0400 (Tue, 28 Apr 2026)
EndedAt: 2026-04-28 17:54:12 -0400 (Tue, 28 Apr 2026)
EllapsedTime: 25.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 cmapR
###
##############################################################################
##############################################################################


* checking for file ‘cmapR/DESCRIPTION’ ... OK
* preparing ‘cmapR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘tutorial.Rmd’ using rmarkdown

Quitting from tutorial.Rmd:28-33 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unknown Bioconductor version '3.24'; see https://bioconductor.org/install
---
Backtrace:
    ▆
 1. └─BiocManager::install("cmapR")
 2.   └─BiocManager:::.version_validate(version)
 3.     ├─base::ifelse(.is_CRAN_check(), .message(txt), .stop(txt))
 4.     └─BiocManager:::.stop(txt)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
unknown Bioconductor version '3.24'; see https://bioconductor.org/install
--- failed re-building ‘tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted