Pierrick Roger
| Snapshot Date: 2025-06-11 13:25 -0400 (Wed, 11 Jun 2025) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: devel |
| git_last_commit: 9920d92 |
| git_last_commit_date: 2025-04-15 12:42:50 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-06-12 12:05 -0400 (Thu, 12 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4795 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" | 4536 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4574 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4513 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 205/2309 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.15.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.15.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings biodbHmdb_1.15.0.tar.gz |
| StartedAt: 2025-06-11 20:37:37 -0400 (Wed, 11 Jun 2025) |
| EndedAt: 2025-06-11 20:38:26 -0400 (Wed, 11 Jun 2025) |
| EllapsedTime: 49.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings biodbHmdb_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.22-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... INFO
installed size is 7.2Mb
sub-directories of 1Mb or more:
libs 6.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.15.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.22-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-06-11 20:38:10.181][biodb::testContext]
biodb.INFO [2025-06-11 20:38:10.183][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 20:38:10.184][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-06-11 20:38:10.186][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 20:38:10.187][biodb::testContext]
biodb.INFO [2025-06-11 20:38:10.188][biodb::testThat]
biodb.INFO [2025-06-11 20:38:10.189][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2025-06-11 20:38:10.190][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:10.191][biodb::testThat]
biodb.INFO [2025-06-11 20:38:10.288][biodb::testContext]
biodb.INFO [2025-06-11 20:38:10.290][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 20:38:10.292][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-06-11 20:38:10.294][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 20:38:10.295][biodb::testContext]
biodb.INFO [2025-06-11 20:38:10.310][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-11 20:38:10.314][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-06-11 20:38:10.326][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 20:38:10.328][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-11 20:38:10.330][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-11 20:38:10.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.334][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-11 20:38:10.364][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-11 20:38:10.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.369][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-11 20:38:10.370][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-11 20:38:10.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.373][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-11 20:38:10.374][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-11 20:38:10.376][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-11 20:38:10.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.379][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-11 20:38:10.380][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-11 20:38:10.381][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-11 20:38:10.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.385][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-11 20:38:10.386][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-11 20:38:10.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.390][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-11 20:38:10.391][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-11 20:38:10.392][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-11 20:38:10.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.396][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-11 20:38:10.397][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-11 20:38:10.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.401][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-11 20:38:10.402][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-11 20:38:10.403][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-11 20:38:10.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.406][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-11 20:38:10.407][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-11 20:38:10.408][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-11 20:38:10.409][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-11 20:38:10.410][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-11 20:38:10.411][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-11 20:38:10.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.415][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-11 20:38:10.416][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-11 20:38:10.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.420][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-11 20:38:10.421][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-11 20:38:10.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.425][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-11 20:38:10.426][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-11 20:38:10.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.430][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-11 20:38:10.431][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-11 20:38:10.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.435][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-11 20:38:10.436][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-11 20:38:10.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.440][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-11 20:38:10.441][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-11 20:38:10.445][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-11 20:38:10.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.449][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-11 20:38:10.450][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-11 20:38:10.451][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-11 20:38:10.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.458][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-11 20:38:10.496][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.513][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-11 20:38:10.515][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.516][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:10.517][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.518][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.519][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.520][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.521][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 20:38:10.522][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:10.523][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.524][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-11 20:38:10.525][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:10.526][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.528][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.529][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 20:38:10.529][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 20:38:10.529][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 20:38:10.529][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 20:38:10.529][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 20:38:10.530][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:10.531][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:10.532][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:10.533][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:10.534][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:10.535][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:10.536][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.537][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.538][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:10.539][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:10.540][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.549][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.550][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-11 20:38:10.552][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.554][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 20:38:10.555][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.556][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:10.557][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.558][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.559][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.559][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.561][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 20:38:10.562][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:10.563][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.564][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-11 20:38:10.565][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:10.566][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.567][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.568][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 20:38:10.568][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 20:38:10.568][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 20:38:10.568][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 20:38:10.568][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 20:38:10.569][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:10.570][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:10.570][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:10.571][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:10.572][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:10.573][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:10.574][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.575][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.576][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:10.577][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:10.578][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.579][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.580][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-11 20:38:10.582][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.583][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-11 20:38:10.585][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.586][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:10.587][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.588][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.589][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.590][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.591][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 20:38:10.592][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:10.593][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.594][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-11 20:38:10.595][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:10.596][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.597][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.598][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.599][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:10.600][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:10.601][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:10.602][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:10.603][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:10.604][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:10.605][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.606][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.607][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:10.608][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:10.609][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.610][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.611][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-11 20:38:10.613][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.614][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 20:38:10.616][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.617][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:10.618][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.619][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.620][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.621][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.622][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 20:38:10.623][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:10.624][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.625][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-11 20:38:10.626][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:10.627][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.628][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:10.629][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.630][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:10.631][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:10.632][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:10.633][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:10.634][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:10.635][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:10.636][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:10.637][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.638][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:10.639][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:10.640][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:10.641][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:10.645][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 20:38:10.646][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.728][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-11 20:38:10.734][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-11 20:38:10.735][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-11 20:38:10.737][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-11 20:38:10.747][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-11 20:38:10.749][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 20:38:10.750][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-11 20:38:10.752][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-11 20:38:10.753][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-11 20:38:10.755][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 20:38:10.756][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 20:38:10.758][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-11 20:38:10.759][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-11 20:38:10.760][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-11 20:38:10.762][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-11 20:38:10.763][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 20:38:10.765][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-11 20:38:10.766][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-11 20:38:10.768][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-11 20:38:10.769][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-11 20:38:10.770][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-11 20:38:10.772][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-11 20:38:10.773][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-11 20:38:10.775][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-11 20:38:10.777][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-11 20:38:10.778][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-11 20:38:10.780][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-11 20:38:10.781][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-11 20:38:10.783][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-11 20:38:10.784][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-11 20:38:10.786][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-11 20:38:10.787][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-11 20:38:10.789][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-11 20:38:10.790][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-11 20:38:10.792][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-11 20:38:10.793][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-11 20:38:10.795][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-11 20:38:10.796][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-11 20:38:10.798][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-11 20:38:10.799][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-11 20:38:10.801][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-11 20:38:10.802][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-11 20:38:10.804][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-11 20:38:10.805][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-11 20:38:10.807][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-11 20:38:10.809][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-11 20:38:10.810][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-11 20:38:10.812][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-11 20:38:10.814][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-11 20:38:10.815][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-11 20:38:10.817][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-11 20:38:10.818][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-11 20:38:10.820][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-11 20:38:10.821][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-11 20:38:10.823][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-11 20:38:10.824][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-11 20:38:10.826][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-11 20:38:10.827][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-11 20:38:10.829][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-11 20:38:10.830][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-11 20:38:10.832][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-11 20:38:10.834][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-11 20:38:10.835][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-11 20:38:10.837][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-11 20:38:10.838][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-11 20:38:10.840][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-11 20:38:10.841][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-11 20:38:10.843][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-11 20:38:10.844][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-11 20:38:10.846][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-11 20:38:10.847][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-11 20:38:10.848][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-11 20:38:10.850][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-11 20:38:10.851][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-11 20:38:10.853][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-11 20:38:10.854][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-11 20:38:10.856][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-11 20:38:10.857][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-11 20:38:10.859][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-11 20:38:10.860][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-11 20:38:10.862][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-11 20:38:10.863][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-11 20:38:10.864][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-11 20:38:10.871][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-11 20:38:10.874][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-11 20:38:10.877][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 20:38:10.878][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.880][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:10.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:10.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:10.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:10.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:10.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:10.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:10.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:11.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:11.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:11.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:11.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:11.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:11.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:11.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:11.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:11.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:11.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:11.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:11.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:11.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:11.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:11.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:11.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:11.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:11.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:11.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:11.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:11.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:11.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:11.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:11.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:11.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:11.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:11.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:11.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:11.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:11.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:11.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:11.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:11.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:11.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:11.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:11.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:11.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:11.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:11.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:11.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:11.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:11.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:11.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:11.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:11.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:11.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:11.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:11.044][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-11 20:38:11.055][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:11.058][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:11.059][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-11 20:38:11.060][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:11.061][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:11.062][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:11.063][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-11 20:38:11.064][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:11.065][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:11.066][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-11 20:38:11.067][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:11.068][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:11.069][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-11 20:38:11.071][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-11 20:38:11.072][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-11 20:38:11.073][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:11.074][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 20:38:11.074][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-11 20:38:11.074][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-11 20:38:11.075][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-11 20:38:11.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:11.077][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:11.078][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:11.079][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:11.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:11.081][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:11.082][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 20:38:11.082][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-11 20:38:11.084][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:11.085][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:11.086][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:11.087][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:11.094][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-11 20:38:11.096][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 20:38:11.098][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 20:38:11.099][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 20:38:11.101][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 20:38:11.129][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:11.130][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-06-11 20:38:11.135][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:11.139][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 20:38:11.144][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:11.145][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:11.146][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-06-11 20:38:11.147][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-06-11 20:38:11.149][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 20:38:11.149][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-06-11 20:38:11.150][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:11.151][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:11.151][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-06-11 20:38:11.152][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-06-11 20:38:11.154][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:11.182][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 20:38:11.184][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:11.185][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:11.187][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 20:38:11.188][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:11.189][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-06-11 20:38:11.197][biodb::testThat]
biodb.INFO [2025-06-11 20:38:11.198][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-06-11 20:38:11.199][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:11.200][biodb::testThat]
biodb.TRACE[2025-06-11 20:38:11.205][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-06-11 20:38:11.207][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 20:38:11.211][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 20:38:11.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:11.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:11.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:11.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:11.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:11.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:11.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 20:38:11.246][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.250][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.271][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.272][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.275][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.307][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.313][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.314][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.316][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.318][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.322][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.324][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.326][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.335][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.342][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.343][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.345][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.351][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.355][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.356][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.364][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.370][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.381][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.383][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.389][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.390][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.392][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.398][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:11.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:11.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.401][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:11.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:11.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:11.407][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:11.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.409][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:11.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.419][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.425][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.428][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.433][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.437][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.442][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:11.443][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:11.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.445][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.447][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:11.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:11.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:11.452][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:11.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.454][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:11.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:11.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.460][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:11.461][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:11.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.463][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.465][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:11.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:11.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.516][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.521][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.526][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:11.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.537][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.541][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.545][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:11.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:11.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:11.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:11.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:11.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:11.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:11.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:11.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:11.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:11.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.611][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:11.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.615][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:11.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:11.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.619][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:11.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:11.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:11.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:11.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:11.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:11.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:11.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:11.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:11.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:11.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:11.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.664][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:11.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:11.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.714][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.722][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:11.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:11.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:11.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:11.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:11.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.739][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:11.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.802][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.806][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:11.849][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-11 20:38:11.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 20:38:11.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 20:38:11.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 20:38:11.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 20:38:11.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-11 20:38:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-11 20:38:11.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-11 20:38:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-11 20:38:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.895][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.932][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.936][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.940][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:11.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.966][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.969][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:11.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:11.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.984][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.989][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.993][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:11.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:11.997][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.998][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:11.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.000][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.001][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:12.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:12.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.036][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.037][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.039][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.071][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.102][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.120][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.132][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.133][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:12.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:12.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:12.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:12.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:12.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.160][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:12.161][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:12.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.163][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:12.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:12.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.177][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:12.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:12.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:12.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:12.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.193][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:12.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.197][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:12.198][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:12.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.200][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.201][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:12.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:12.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:12.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:12.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:12.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:12.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:12.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:12.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.228][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:12.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:12.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.231][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:12.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:12.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.246][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.259][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.260][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.262][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.264][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.291][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.292][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.294][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.322][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.323][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.325][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.361][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.364][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.392][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.393][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.395][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:12.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:12.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:12.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:12.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:12.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.424][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:12.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:12.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.427][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:12.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:12.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:12.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:12.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:12.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:12.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:12.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:12.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:12.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:12.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.459][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.490][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.508][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.513][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.517][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.526][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.528][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.529][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.542][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:12.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:12.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.546][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.552][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.553][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.555][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.561][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.562][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.564][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.574][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.580][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.581][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.583][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.590][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.592][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.594][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.600][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.602][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.604][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.610][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.612][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.614][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.619][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:12.621][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:12.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.623][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.628][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:12.630][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:12.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.632][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:12.639][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:12.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.641][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.646][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.647][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.649][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.655][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.658][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.664][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.665][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.667][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.672][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:12.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:12.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.676][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.682][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.684][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.689][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:12.691][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:12.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.693][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:12.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:12.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.701][ef$get] fields variable is a list.
biodb.INFO [2025-06-11 20:38:12.717][biodb::testThat]
biodb.INFO [2025-06-11 20:38:12.718][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-06-11 20:38:12.719][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:12.720][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:12.737][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-11 20:38:12.746][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 20:38:12.752][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:12.754][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 20:38:12.756][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 20:38:12.757][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 20:38:12.760][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-06-11 20:38:12.761][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 20:38:12.788][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 20:38:12.790][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 20:38:12.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:12.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:12.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:12.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:12.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:12.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:12.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 20:38:12.805][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:12.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:12.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.808][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:12.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:12.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.814][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:12.815][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:12.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.817][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.819][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:12.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.823][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.824][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.826][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.828][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.832][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.833][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.835][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.837][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:12.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.844][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.850][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.851][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.853][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:12.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.859][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.860][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.864][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.877][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.880][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.885][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.888][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:12.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.894][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.895][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.897][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.903][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:12.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:12.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.906][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:12.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:12.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:12.913][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:12.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.915][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:12.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:12.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.922][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.924][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.933][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:12.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.939][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:12.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:12.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.942][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:12.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:12.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.948][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:12.949][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:12.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.951][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.952][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:12.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.957][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:12.958][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:12.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.960][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:12.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.966][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:12.967][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.969][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.971][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:12.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:12.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:12.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:12.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:12.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:12.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.993][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:12.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:12.997][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:12.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:13.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.005][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:13.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:13.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:13.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:13.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:13.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:13.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:13.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:13.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:13.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:13.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:13.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:13.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:13.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:13.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:13.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:13.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:13.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:13.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:13.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:13.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:13.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:13.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:13.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:13.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:13.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:13.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:13.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.090][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.094][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:13.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:13.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:13.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:13.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:13.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:13.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:13.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:13.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:13.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:13.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:13.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:13.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:13.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:13.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.145][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:13.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:13.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:13.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:13.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:13.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:13.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:13.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:13.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:13.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:13.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:13.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:13.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.196][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.200][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:13.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:13.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:13.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:13.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:13.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.216][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:13.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.233][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.259][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:13.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:13.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:13.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:13.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:13.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:13.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:13.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:13.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:13.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:13.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:13.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:13.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:13.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.300][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-11 20:38:13.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-06-11 20:38:13.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-06-11 20:38:13.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-06-11 20:38:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-06-11 20:38:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-06-11 20:38:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-06-11 20:38:13.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-11 20:38:13.322][biodb::testThat]
biodb.INFO [2025-06-11 20:38:13.323][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-06-11 20:38:13.324][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:13.325][biodb::testThat]
biodb.TRACE[2025-06-11 20:38:13.335][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.339][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.340][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-06-11 20:38:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.384][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-06-11 20:38:13.386][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-06-11 20:38:13.387][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 20:38:13.388][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 20:38:13.389][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.391][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.392][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:13.394][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.395][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:13.396][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:13.397][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:13.398][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:13.399][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 20:38:13.401][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 20:38:13.402][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 20:38:13.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.420][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 20:38:13.421][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 20:38:13.422][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 20:38:13.434][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.435][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.437][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.439][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-06-11 20:38:13.451][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.455][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.459][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.466][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-06-11 20:38:13.529][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 20:38:13.530][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-06-11 20:38:13.532][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-06-11 20:38:13.547][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.549][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.550][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:13.552][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.553][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:13.569][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:13.570][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:13.571][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:13.572][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 20:38:13.573][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 20:38:13.574][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 20:38:13.576][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.581][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.585][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.589][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:13.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:13.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.593][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 20:38:13.594][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 20:38:13.595][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 20:38:13.607][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.608][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.616][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.617][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-06-11 20:38:13.629][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.633][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.637][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.644][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-06-11 20:38:13.646][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-06-11 20:38:13.647][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-06-11 20:38:13.648][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-06-11 20:38:13.649][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.651][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.653][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:13.654][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.655][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:13.656][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:13.657][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:13.658][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:13.659][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 20:38:13.660][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 20:38:13.661][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 20:38:13.663][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.676][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.680][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 20:38:13.681][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 20:38:13.682][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-06-11 20:38:13.697][biodb::testThat]
biodb.INFO [2025-06-11 20:38:13.698][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-06-11 20:38:13.700][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:13.701][biodb::testThat]
biodb.TRACE[2025-06-11 20:38:13.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.736][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-06-11 20:38:13.737][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 20:38:13.738][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 20:38:13.740][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.741][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.743][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:13.744][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:13.745][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:13.746][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:13.748][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:13.749][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:13.750][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 20:38:13.751][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 20:38:13.752][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 20:38:13.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:13.777][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 20:38:13.778][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-06-11 20:38:13.793][biodb::testThat]
biodb.INFO [2025-06-11 20:38:13.794][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-06-11 20:38:13.795][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:13.796][biodb::testThat]
biodb.TRACE[2025-06-11 20:38:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 20:38:13.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 20:38:13.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.824][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 20:38:13.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 20:38:13.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-11 20:38:13.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-11 20:38:13.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.833][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-11 20:38:13.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-11 20:38:13.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 20:38:13.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 20:38:13.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.887][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 20:38:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 20:38:13.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-11 20:38:13.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-11 20:38:13.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:13.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-11 20:38:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-11 20:38:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-11 20:38:13.912][biodb::testThat]
biodb.INFO [2025-06-11 20:38:13.914][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-06-11 20:38:13.915][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:13.916][biodb::testThat]
biodb.INFO [2025-06-11 20:38:13.925][biodb::testThat]
biodb.INFO [2025-06-11 20:38:13.926][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-06-11 20:38:13.927][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:13.928][biodb::testThat]
biodb.INFO [2025-06-11 20:38:13.936][biodb::testThat]
biodb.INFO [2025-06-11 20:38:13.937][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-06-11 20:38:13.938][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:13.939][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:13.943][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-06-11 20:38:14.570][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-06-11 20:38:14.631][biodb::testThat]
biodb.INFO [2025-06-11 20:38:14.633][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-06-11 20:38:14.635][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:14.636][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:14.866][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-06-11 20:38:14.913][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:14.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:14.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:14.919][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:14.921][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:14.922][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:14.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:14.926][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:14.928][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:14.930][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:14.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:14.933][ef$get] fields variable is a list.
biodb.INFO [2025-06-11 20:38:14.935][biodb::testThat]
biodb.INFO [2025-06-11 20:38:14.937][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-06-11 20:38:14.939][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:14.940][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:14.944][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-06-11 20:38:15.015][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 20:38:15.017][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.019][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 20:38:15.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-06-11 20:38:15.056][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-06-11 20:38:15.057][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-06-11 20:38:15.058][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 20:38:15.059][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.061][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 20:38:15.062][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 20:38:15.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:15.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 20:38:15.075][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:15.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:15.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:15.105][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-06-11 20:38:15.106][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-06-11 20:38:15.123][biodb::testThat]
biodb.INFO [2025-06-11 20:38:15.125][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-06-11 20:38:15.127][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:15.129][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:15.143][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-06-11 20:38:15.145][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-06-11 20:38:15.147][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 20:38:15.151][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.154][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 20:38:15.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-06-11 20:38:15.160][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-06-11 20:38:15.162][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-06-11 20:38:15.164][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 20:38:15.221][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.223][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 20:38:15.225][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 20:38:15.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:15.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 20:38:15.244][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:15.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:15.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.248][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:15.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:15.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:15.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:15.276][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-06-11 20:38:15.277][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-06-11 20:38:15.278][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-06-11 20:38:15.292][biodb::testThat]
biodb.INFO [2025-06-11 20:38:15.294][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-06-11 20:38:15.295][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:15.296][biodb::testThat]
biodb.INFO [2025-06-11 20:38:15.320][biodb::testThat]
biodb.INFO [2025-06-11 20:38:15.321][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-06-11 20:38:15.322][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:15.323][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:15.326][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.327][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.329][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:15.330][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.331][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:15.333][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:15.334][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:15.335][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:15.336][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-06-11 20:38:15.345][biodb::testThat]
biodb.INFO [2025-06-11 20:38:15.346][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-06-11 20:38:15.353][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:15.355][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:15.358][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.359][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.361][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:15.362][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:15.363][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:15.364][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:15.365][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:15.366][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:15.367][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-06-11 20:38:15.376][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:15.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:15.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.379][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.380][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:15.382][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:15.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.383][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:15.384][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:15.386][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:15.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:15.388][ef$get] fields variable is a list.
biodb.INFO [2025-06-11 20:38:15.389][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-11 20:38:15.390][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-06-11 20:38:15.399][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-11 20:38:15.401][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-11 20:38:15.401][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.403][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.405][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-06-11 20:38:15.410][biodb::testContext]
biodb.INFO [2025-06-11 20:38:15.411][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 20:38:15.412][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-06-11 20:38:15.413][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 20:38:15.414][biodb::testContext]
biodb.INFO [2025-06-11 20:38:15.418][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-11 20:38:15.420][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-06-11 20:38:15.424][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 20:38:15.425][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-11 20:38:15.426][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-11 20:38:15.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.430][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-11 20:38:15.431][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-11 20:38:15.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.435][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-11 20:38:15.436][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-11 20:38:15.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.439][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-11 20:38:15.440][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-11 20:38:15.442][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-11 20:38:15.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.445][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-11 20:38:15.446][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-11 20:38:15.447][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-11 20:38:15.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.451][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-11 20:38:15.452][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-11 20:38:15.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.456][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-11 20:38:15.457][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-11 20:38:15.458][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-11 20:38:15.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.462][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-11 20:38:15.463][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-11 20:38:15.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.466][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-11 20:38:15.467][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-11 20:38:15.468][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-11 20:38:15.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.478][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-11 20:38:15.480][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-11 20:38:15.481][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-11 20:38:15.482][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-11 20:38:15.483][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-11 20:38:15.484][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-11 20:38:15.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.488][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-11 20:38:15.489][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-11 20:38:15.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.493][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-11 20:38:15.494][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-11 20:38:15.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.498][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-11 20:38:15.499][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-11 20:38:15.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.503][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-11 20:38:15.504][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-11 20:38:15.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.508][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-11 20:38:15.509][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-11 20:38:15.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.513][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-11 20:38:15.514][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-11 20:38:15.518][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-11 20:38:15.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.522][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-11 20:38:15.523][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-11 20:38:15.524][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-11 20:38:15.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.528][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-11 20:38:15.531][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.532][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-11 20:38:15.533][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.534][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:15.535][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.536][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.537][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.538][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.539][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 20:38:15.540][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:15.541][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.542][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-11 20:38:15.543][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:15.544][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.545][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.546][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 20:38:15.546][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 20:38:15.546][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 20:38:15.546][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 20:38:15.546][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 20:38:15.547][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:15.549][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:15.550][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:15.551][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:15.552][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:15.553][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:15.554][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.555][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.556][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:15.557][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:15.558][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.559][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.560][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-11 20:38:15.562][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.563][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 20:38:15.564][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.565][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:15.566][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.567][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.568][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.569][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.570][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 20:38:15.571][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:15.572][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.573][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-11 20:38:15.574][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:15.575][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.576][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.577][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 20:38:15.577][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 20:38:15.577][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 20:38:15.577][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 20:38:15.577][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 20:38:15.578][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:15.579][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:15.580][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:15.581][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:15.582][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:15.583][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:15.584][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.585][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.586][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:15.587][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:15.588][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.589][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.590][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-11 20:38:15.593][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.594][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-11 20:38:15.602][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.604][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:15.605][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.606][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.607][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.608][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.609][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 20:38:15.610][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:15.611][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.612][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-11 20:38:15.613][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:15.614][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.615][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.616][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.617][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:15.618][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:15.619][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:15.620][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:15.621][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:15.622][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:15.623][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.625][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.626][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:15.627][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:15.628][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.629][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.630][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-11 20:38:15.632][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.633][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 20:38:15.634][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.636][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:15.637][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.638][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.639][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.640][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.641][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 20:38:15.642][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:15.643][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.644][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-11 20:38:15.645][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:15.646][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.647][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:15.648][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.650][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:15.651][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:15.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:15.653][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:15.654][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:15.655][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:15.656][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:15.657][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.658][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:15.659][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:15.660][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:15.661][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:15.662][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 20:38:15.663][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.748][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-11 20:38:15.750][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-11 20:38:15.752][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-11 20:38:15.753][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-11 20:38:15.754][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-11 20:38:15.756][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 20:38:15.757][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-11 20:38:15.759][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-11 20:38:15.760][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-11 20:38:15.761][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 20:38:15.763][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 20:38:15.764][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-11 20:38:15.766][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-11 20:38:15.767][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-11 20:38:15.768][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-11 20:38:15.770][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 20:38:15.771][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-11 20:38:15.773][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-11 20:38:15.774][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-11 20:38:15.775][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-11 20:38:15.777][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-11 20:38:15.778][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-11 20:38:15.780][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-11 20:38:15.781][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-11 20:38:15.782][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-11 20:38:15.784][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-11 20:38:15.785][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-11 20:38:15.787][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-11 20:38:15.788][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-11 20:38:15.790][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-11 20:38:15.791][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-11 20:38:15.793][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-11 20:38:15.794][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-11 20:38:15.796][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-11 20:38:15.798][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-11 20:38:15.800][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-11 20:38:15.802][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-11 20:38:15.803][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-11 20:38:15.805][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-11 20:38:15.806][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-11 20:38:15.808][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-11 20:38:15.809][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-11 20:38:15.811][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-11 20:38:15.812][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-11 20:38:15.814][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-11 20:38:15.815][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-11 20:38:15.816][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-11 20:38:15.818][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-11 20:38:15.819][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-11 20:38:15.821][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-11 20:38:15.822][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-11 20:38:15.823][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-11 20:38:15.825][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-11 20:38:15.826][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-11 20:38:15.828][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-11 20:38:15.836][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-11 20:38:15.838][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-11 20:38:15.840][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-11 20:38:15.841][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-11 20:38:15.842][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-11 20:38:15.844][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-11 20:38:15.845][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-11 20:38:15.846][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-11 20:38:15.848][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-11 20:38:15.849][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-11 20:38:15.851][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-11 20:38:15.853][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-11 20:38:15.855][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-11 20:38:15.857][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-11 20:38:15.858][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-11 20:38:15.859][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-11 20:38:15.861][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-11 20:38:15.862][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-11 20:38:15.863][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-11 20:38:15.865][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-11 20:38:15.866][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-11 20:38:15.867][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-11 20:38:15.869][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-11 20:38:15.870][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-11 20:38:15.872][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-11 20:38:15.873][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-11 20:38:15.874][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-11 20:38:15.876][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-11 20:38:15.879][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-11 20:38:15.881][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-11 20:38:15.882][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 20:38:15.883][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.885][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:15.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:15.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:15.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:15.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:15.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:15.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:15.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:16.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:16.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:16.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:16.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:16.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.016][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-11 20:38:16.018][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:16.019][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.020][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.021][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.022][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:16.023][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.024][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-11 20:38:16.025][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.026][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.027][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-11 20:38:16.028][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:16.029][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.030][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-11 20:38:16.031][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-11 20:38:16.032][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-11 20:38:16.033][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.034][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 20:38:16.034][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-11 20:38:16.034][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-11 20:38:16.035][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-11 20:38:16.036][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.037][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.038][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:16.039][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.040][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.040][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.041][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 20:38:16.041][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-11 20:38:16.042][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:16.043][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:16.044][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.045][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.046][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-11 20:38:16.048][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 20:38:16.049][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 20:38:16.051][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 20:38:16.053][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 20:38:16.056][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:16.057][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-06-11 20:38:16.058][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:16.059][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 20:38:16.061][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:16.062][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:16.063][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-06-11 20:38:16.064][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-06-11 20:38:16.065][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 20:38:16.065][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-06-11 20:38:16.066][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:16.067][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:16.068][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-06-11 20:38:16.069][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-06-11 20:38:16.070][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:16.076][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 20:38:16.078][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:16.079][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:16.081][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 20:38:16.082][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:16.083][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-06-11 20:38:16.084][biodb::testThat]
biodb.INFO [2025-06-11 20:38:16.085][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-06-11 20:38:16.086][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:16.087][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:16.091][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:16.092][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:16.093][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:16.095][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:16.096][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:16.097][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:16.098][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:16.099][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:16.100][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 20:38:16.102][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-06-11 20:38:16.107][biodb::testThat]
biodb.INFO [2025-06-11 20:38:16.108][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-06-11 20:38:16.109][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:16.110][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:16.112][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-06-11 20:38:16.113][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 20:38:16.115][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:16.116][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 20:38:16.118][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-06-11 20:38:16.119][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 20:38:16.121][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-06-11 20:38:16.122][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 20:38:16.124][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 20:38:16.125][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 20:38:16.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:16.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:16.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:16.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 20:38:16.140][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.143][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.148][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.149][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.151][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.152][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.157][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.158][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.159][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.165][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.166][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.168][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.169][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.176][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.182][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.183][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.185][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.199][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.200][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.207][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.212][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.213][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.215][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.221][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.222][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.224][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.229][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:16.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:16.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.232][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:16.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:16.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:16.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:16.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.240][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:16.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:16.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.249][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.254][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.257][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.262][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.265][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.270][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:16.271][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:16.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.273][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.274][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:16.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:16.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:16.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:16.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.281][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:16.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:16.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.287][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:16.288][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:16.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.289][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.291][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:16.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:16.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.314][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.318][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.321][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:16.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.325][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.329][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.333][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:16.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:16.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:16.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:16.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:16.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:16.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:16.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:16.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:16.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:16.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:16.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:16.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:16.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:16.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:16.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:16.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:16.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:16.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:16.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:16.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:16.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:16.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:16.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:16.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:16.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:16.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.452][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.459][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:16.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:16.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:16.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.497][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.501][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.505][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:16.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:16.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:16.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:16.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:16.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.521][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:16.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.543][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:16.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:16.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:16.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:16.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.567][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:16.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:16.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.571][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:16.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:16.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:16.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:16.606][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-06-11 20:38:16.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:16.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:16.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-11 20:38:16.625][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-11 20:38:16.626][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-06-11 20:38:16.627][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-11 20:38:16.628][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-11 20:38:16.629][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:16.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:16.631][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.632][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-06-11 20:38:16.642][biodb::testContext]
biodb.INFO [2025-06-11 20:38:16.644][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 20:38:16.645][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-06-11 20:38:16.646][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 20:38:16.646][biodb::testContext]
biodb.INFO [2025-06-11 20:38:16.650][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-11 20:38:16.652][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-06-11 20:38:16.655][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 20:38:16.656][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-11 20:38:16.657][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-11 20:38:16.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.661][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-11 20:38:16.662][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-11 20:38:16.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.665][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-11 20:38:16.666][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-11 20:38:16.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.670][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-11 20:38:16.671][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-11 20:38:16.672][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-11 20:38:16.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.676][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-11 20:38:16.677][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-11 20:38:16.678][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-11 20:38:16.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.681][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-11 20:38:16.682][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-11 20:38:16.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.686][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-11 20:38:16.687][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-11 20:38:16.688][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-11 20:38:16.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.691][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-11 20:38:16.692][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-11 20:38:16.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.696][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-11 20:38:16.697][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-11 20:38:16.698][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-11 20:38:16.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.702][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-11 20:38:16.703][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-11 20:38:16.704][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-11 20:38:16.705][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-11 20:38:16.706][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-11 20:38:16.707][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-11 20:38:16.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.711][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-11 20:38:16.712][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-11 20:38:16.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.716][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-11 20:38:16.717][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-11 20:38:16.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.720][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-11 20:38:16.721][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-11 20:38:16.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.725][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-11 20:38:16.726][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-11 20:38:16.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.730][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-11 20:38:16.731][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-11 20:38:16.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.735][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-11 20:38:16.736][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-11 20:38:16.741][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-11 20:38:16.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.745][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-11 20:38:16.746][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-11 20:38:16.747][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-11 20:38:16.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.751][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-11 20:38:16.759][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.761][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-11 20:38:16.763][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.764][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:16.765][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.766][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.767][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.768][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.769][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 20:38:16.770][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:16.771][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.772][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-11 20:38:16.773][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:16.774][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.775][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.776][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 20:38:16.776][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 20:38:16.776][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 20:38:16.776][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 20:38:16.776][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 20:38:16.778][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:16.779][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.780][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.781][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:16.782][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.784][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.785][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.786][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:16.787][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:16.788][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.789][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.790][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-11 20:38:16.792][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.793][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 20:38:16.794][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.795][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:16.796][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.797][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.798][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.799][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.800][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 20:38:16.801][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:16.803][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.804][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-11 20:38:16.805][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:16.806][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.807][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.808][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 20:38:16.808][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 20:38:16.808][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 20:38:16.808][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 20:38:16.808][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 20:38:16.809][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:16.810][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.811][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.812][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:16.813][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.814][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.815][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.816][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.817][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:16.818][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:16.819][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.820][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.822][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-11 20:38:16.824][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.825][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-11 20:38:16.826][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.827][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:16.828][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.829][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.830][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.831][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.832][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 20:38:16.833][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:16.834][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.835][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-11 20:38:16.836][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:16.837][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.838][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.839][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.840][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:16.841][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.842][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.843][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:16.844][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.845][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.846][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.847][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.848][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:16.849][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:16.850][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.851][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.852][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-11 20:38:16.854][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.855][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 20:38:16.856][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.858][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:16.859][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.860][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.861][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.862][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.863][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 20:38:16.864][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:16.865][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.866][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-11 20:38:16.867][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:16.868][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.870][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:16.871][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.881][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 20:38:16.883][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.884][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.885][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:16.886][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:16.887][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:16.888][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:16.889][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.890][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:16.891][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:16.892][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:16.893][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:16.895][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 20:38:16.896][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:16.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:16.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:16.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:16.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:16.976][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-11 20:38:16.977][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-11 20:38:16.979][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-11 20:38:16.986][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-11 20:38:16.989][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-11 20:38:16.991][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 20:38:16.993][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-11 20:38:16.995][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-11 20:38:17.017][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-11 20:38:17.020][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 20:38:17.022][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 20:38:17.024][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-11 20:38:17.025][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-11 20:38:17.027][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-11 20:38:17.028][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-11 20:38:17.030][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 20:38:17.031][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-11 20:38:17.032][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-11 20:38:17.034][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-11 20:38:17.035][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-11 20:38:17.037][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-11 20:38:17.038][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-11 20:38:17.040][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-11 20:38:17.041][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-11 20:38:17.043][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-11 20:38:17.044][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-11 20:38:17.046][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-11 20:38:17.047][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-11 20:38:17.049][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-11 20:38:17.050][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-11 20:38:17.052][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-11 20:38:17.053][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-11 20:38:17.055][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-11 20:38:17.056][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-11 20:38:17.058][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-11 20:38:17.059][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-11 20:38:17.061][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-11 20:38:17.062][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-11 20:38:17.064][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-11 20:38:17.065][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-11 20:38:17.067][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-11 20:38:17.068][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-11 20:38:17.070][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-11 20:38:17.071][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-11 20:38:17.073][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-11 20:38:17.074][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-11 20:38:17.076][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-11 20:38:17.077][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-11 20:38:17.079][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-11 20:38:17.080][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-11 20:38:17.082][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-11 20:38:17.083][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-11 20:38:17.085][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-11 20:38:17.087][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-11 20:38:17.088][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-11 20:38:17.089][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-11 20:38:17.091][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-11 20:38:17.092][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-11 20:38:17.094][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-11 20:38:17.095][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-11 20:38:17.097][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-11 20:38:17.098][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-11 20:38:17.100][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-11 20:38:17.101][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-11 20:38:17.103][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-11 20:38:17.104][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-11 20:38:17.106][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-11 20:38:17.107][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-11 20:38:17.109][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-11 20:38:17.110][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-11 20:38:17.111][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-11 20:38:17.113][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-11 20:38:17.114][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-11 20:38:17.116][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-11 20:38:17.117][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-11 20:38:17.119][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-11 20:38:17.120][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-11 20:38:17.121][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-11 20:38:17.123][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-11 20:38:17.124][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-11 20:38:17.131][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-11 20:38:17.132][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-11 20:38:17.134][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-11 20:38:17.135][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-11 20:38:17.137][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-11 20:38:17.138][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 20:38:17.138][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.140][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 20:38:17.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.249][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-11 20:38:17.251][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:17.253][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:17.254][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-11 20:38:17.255][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:17.256][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 20:38:17.257][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:17.258][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-11 20:38:17.259][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:17.260][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 20:38:17.260][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-11 20:38:17.261][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 20:38:17.262][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:17.263][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-11 20:38:17.264][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-11 20:38:17.265][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-11 20:38:17.266][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-11 20:38:17.267][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 20:38:17.267][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-11 20:38:17.267][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-11 20:38:17.268][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-11 20:38:17.269][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:17.270][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:17.271][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 20:38:17.272][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 20:38:17.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 20:38:17.274][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 20:38:17.275][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 20:38:17.275][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-11 20:38:17.276][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:17.277][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:17.277][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-11 20:38:17.278][self$setPropertyValue]
biodb.DEBUG[2025-06-11 20:38:17.280][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-11 20:38:17.281][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 20:38:17.283][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 20:38:17.284][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 20:38:17.286][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 20:38:17.290][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:17.290][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-06-11 20:38:17.292][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:17.293][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 20:38:17.294][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:17.295][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:17.296][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-06-11 20:38:17.297][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-06-11 20:38:17.298][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 20:38:17.298][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-06-11 20:38:17.299][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 20:38:17.300][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 20:38:17.301][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-06-11 20:38:17.302][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-06-11 20:38:17.303][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 20:38:17.304][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 20:38:17.305][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:17.306][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:17.308][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 20:38:17.309][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 20:38:17.310][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-06-11 20:38:17.311][biodb::testThat]
biodb.INFO [2025-06-11 20:38:17.312][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2025-06-11 20:38:17.313][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 20:38:17.314][biodb::testThat]
biodb.DEBUG[2025-06-11 20:38:17.316][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 20:38:17.317][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-06-11 20:38:17.318][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-06-11 20:38:17.321][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:17.323][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:17.324][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:17.325][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:17.326][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:17.327][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:17.328][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:17.329][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:17.330][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 20:38:17.331][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 20:38:17.332][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-06-11 20:38:17.339][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-11 20:38:17.340][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 20:38:17.341][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:17.343][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 20:38:17.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 20:38:17.346][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 20:38:17.348][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-06-11 20:38:17.349][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 20:38:17.350][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 20:38:17.351][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 20:38:17.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:17.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 20:38:17.366][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.367][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.369][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.374][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.375][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.377][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.383][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.384][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.385][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.387][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.391][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.392][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.394][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.395][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.402][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.407][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.408][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.410][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.418][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.423][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.424][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.426][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.431][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.432][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.434][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.441][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.443][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.445][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:17.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:17.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.458][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:17.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:17.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:17.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:17.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.466][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:17.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.474][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.482][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.487][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.490][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.495][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:17.496][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:17.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.498][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.499][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:17.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:17.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:17.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:17.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.506][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:17.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:17.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.511][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:17.512][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:17.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.514][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.536][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.543][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.551][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:17.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:17.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:17.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.620][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:17.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:17.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.624][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:17.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:17.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.628][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:17.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:17.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:17.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:17.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:17.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:17.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:17.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:17.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:17.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:17.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.681][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.689][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:17.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.728][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.732][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.736][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:17.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:17.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:17.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:17.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.767][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:17.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:17.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.799][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:17.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.803][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:17.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.811][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:17.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:17.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:17.840][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-11 20:38:17.841][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:17.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:17.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.845][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:17.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.850][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:17.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:17.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.854][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:17.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:17.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:17.858][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 20:38:17.859][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 20:38:17.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:17.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:17.870][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-06-11 20:38:17.871][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 20:38:17.873][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:17.874][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 20:38:17.876][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-06-11 20:38:17.878][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 20:38:17.879][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-06-11 20:38:17.880][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 20:38:17.882][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 20:38:17.883][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 20:38:17.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:17.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:17.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:17.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:17.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:17.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:17.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 20:38:17.903][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.907][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:17.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:17.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.912][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.913][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.915][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.917][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:17.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.921][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.922][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.923][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.925][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:17.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.929][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.930][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.931][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:17.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.939][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:17.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.945][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.946][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.948][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:17.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.956][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:17.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.962][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.964][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:17.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.970][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.971][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.973][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.978][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.979][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.981][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:17.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.987][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:17.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:17.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.989][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:17.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:17.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:17.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:17.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:17.997][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.004][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.006][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.022][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.027][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.028][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.030][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.036][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.038][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.040][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.042][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:18.047][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:18.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.049][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:18.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:18.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.055][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:18.056][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:18.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.058][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 20:38:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:18.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.084][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 20:38:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 20:38:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:18.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.092][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:18.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 20:38:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 20:38:18.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:18.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:18.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 20:38:18.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 20:38:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:18.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:18.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:18.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 20:38:18.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:18.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:18.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:18.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 20:38:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:18.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:18.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 20:38:18.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:18.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:18.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 20:38:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.166][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.170][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:18.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:18.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 20:38:18.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 20:38:18.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:18.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:18.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:18.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:18.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 20:38:18.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 20:38:18.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:18.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.216][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:18.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:18.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.220][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:18.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 20:38:18.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 20:38:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:18.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:18.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:18.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:18.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:18.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 20:38:18.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:18.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:18.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.267][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:18.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:18.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.270][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:18.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 20:38:18.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:18.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:18.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:18.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:18.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 20:38:18.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 20:38:18.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.286][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:18.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.301][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 20:38:18.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 20:38:18.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 20:38:18.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 20:38:18.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.325][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:18.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:18.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.329][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:18.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:18.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.337][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:18.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 20:38:18.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 20:38:18.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 20:38:18.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:18.371][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-06-11 20:38:18.372][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.376][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.380][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.384][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:18.387][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 20:38:18.388][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-06-11 20:38:18.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:18.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:18.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:18.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:18.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:18.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:18.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:18.403][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 20:38:18.404][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-06-11 20:38:18.405][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-06-11 20:38:18.407][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:18.408][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:18.410][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:18.411][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:18.412][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:18.413][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:18.414][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:18.415][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:18.416][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 20:38:18.417][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 20:38:18.418][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 20:38:18.420][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.427][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.431][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.435][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:18.447][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 20:38:18.448][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 20:38:18.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:18.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:18.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:18.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:18.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:18.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:18.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 20:38:18.467][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.470][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.475][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.479][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.482][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.490][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:18.494][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-06-11 20:38:18.495][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 20:38:18.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:18.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:18.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:18.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:18.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:18.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:18.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 20:38:18.510][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 20:38:18.511][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-06-11 20:38:18.512][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-06-11 20:38:18.514][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:18.515][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:18.516][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 20:38:18.518][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 20:38:18.519][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 20:38:18.520][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 20:38:18.521][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 20:38:18.522][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 20:38:18.523][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 20:38:18.524][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 20:38:18.525][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 20:38:18.526][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.530][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.534][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.538][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.546][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.549][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:18.553][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-06-11 20:38:18.554][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-06-11 20:38:18.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:18.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:18.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:18.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:18.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:18.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:18.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 20:38:18.571][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.575][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.579][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.582][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.586][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 20:38:18.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 20:38:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 20:38:18.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 20:38:18.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 20:38:18.598][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 20:38:18.598][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 20:38:18.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 20:38:18.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:18.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:18.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:18.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:18.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:18.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-06-11 20:38:18.616][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-11 20:38:18.617][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-06-11 20:38:18.618][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-11 20:38:18.619][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-11 20:38:18.620][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 20:38:18.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 20:38:18.621][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 20:38:18.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 20:38:18.623][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 20:38:18.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
9.610 0.436 10.725