Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-10-07 12:07 -0400 (Tue, 07 Oct 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4853 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4640 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4585 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4584 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 203/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
biocthis 1.19.0 (landing page) Leonardo Collado-Torres
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | TIMEOUT | ||||||||||
To the developers/maintainers of the biocthis package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biocthis.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: biocthis |
Version: 1.19.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:biocthis.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biocthis_1.19.0.tar.gz |
StartedAt: 2025-10-07 04:49:18 -0000 (Tue, 07 Oct 2025) |
EndedAt: 2025-10-07 05:49:47 -0000 (Tue, 07 Oct 2025) |
EllapsedTime: 3629.1 seconds |
RetCode: None |
Status: TIMEOUT |
CheckDir: biocthis.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:biocthis.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biocthis_1.19.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/biocthis.Rcheck’ * using R version 4.5.0 (2025-04-11) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘biocthis/DESCRIPTION’ ... OK * this is package ‘biocthis’ version ‘1.19.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘biocthis’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ...
biocthis.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL biocthis ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘biocthis’ ... ** this is package ‘biocthis’ version ‘1.19.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biocthis)
biocthis.Rcheck/tests/testthat.Rout
R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(biocthis) > > test_check("biocthis") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ] > > proc.time() user system elapsed 1.211 0.049 2.293
biocthis.Rcheck/biocthis-Ex.timings
name | user | system | elapsed | |
bioc_badges | 0 | 0 | 0 | |
bioc_style | 0.703 | 0.028 | 0.735 | |
biocthis_example_pkg | 0.079 | 0.016 | 0.096 | |
use_bioc_citation | 0.317 | 0.073 | 0.397 | |
use_bioc_coc | 0.287 | 0.012 | 0.304 | |
use_bioc_description | 0.543 | 0.016 | 0.565 | |
use_bioc_feature_request_template | 0.183 | 0.000 | 0.195 | |
use_bioc_github_action | 0.001 | 0.000 | 0.000 | |
use_bioc_issue_template | 0.168 | 0.000 | 0.170 | |
use_bioc_news_md | 0.157 | 0.000 | 0.160 | |
use_bioc_pkg_templates | 0.541 | 0.020 | 0.568 | |
use_bioc_pkgdown_css | 0.161 | 0.012 | 0.176 | |
use_bioc_readme_rmd | 0.424 | 0.008 | 0.439 | |
use_bioc_support | 0.277 | 0.016 | 0.296 | |
use_bioc_vignette | 1.676 | 0.099 | 1.804 | |