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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data biocGraph
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* checking for file ‘biocGraph/DESCRIPTION’ ... OK
* preparing ‘biocGraph’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘biocGraph.Rnw’ using Sweave
Loading required package: Rgraphviz
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: ‘generics’

The following objects are masked from ‘package:base’:

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: grid
Warning in sub(object$syntax$docexpr, val, chunk[pos[1L]]) :
  argument 'replacement' has length > 1 and only the first element will be used
--- finished re-building ‘biocGraph.Rnw’

--- re-building ‘layingOutPathways.Rnw’ using Sweave
Loading required package: geneplotter
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:Rgraphviz’:

    from, to

The following object is masked from ‘package:utils’:

    findMatches

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: XML

Attaching package: ‘XML’

The following object is masked from ‘package:graph’:

    addNode


Attaching package: ‘annotate’

The following object is masked from ‘package:Rgraphviz’:

    toFile

Loading required package: fibroEset
Loading required package: hgu95av2.db
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘hgu95av2.db’

Error: processing vignette 'layingOutPathways.Rnw' failed with diagnostics:
 chunk 12 (label = expressionGraph) 
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'object' in selecting a method for function 'contents': object 'hgu95av2ENTREZID' not found

--- failed re-building ‘layingOutPathways.Rnw’

SUMMARY: processing the following file failed:
  ‘layingOutPathways.Rnw’

Error: Vignette re-building failed.
Execution halted