| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-10-31 08:34 -0400 (Fri, 31 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4428 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 159/2321 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| beadarray 2.61.0 (landing page) Mark Dunning
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the beadarray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beadarray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: beadarray |
| Version: 2.61.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray |
| StartedAt: 2025-10-30 16:11:55 -0400 (Thu, 30 Oct 2025) |
| EndedAt: 2025-10-30 16:12:55 -0400 (Thu, 30 Oct 2025) |
| EllapsedTime: 60.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray
###
##############################################################################
##############################################################################
* checking for file ‘beadarray/DESCRIPTION’ ... OK
* preparing ‘beadarray’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ImageProcessing.Rmd’ using rmarkdown
--- finished re-building ‘ImageProcessing.Rmd’
--- re-building ‘beadarray.Rmd’ using rmarkdown
--- finished re-building ‘beadarray.Rmd’
--- re-building ‘beadlevel.Rmd’ using rmarkdown
Quitting from beadlevel.Rmd:286-293 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.validate_assayDataElementReplace()`:
! object and replacement value have different dimensions
---
Backtrace:
▆
1. ├─beadarray::`Detection<-`(`*tmp*`, value = `<dbl[,2]>`)
2. └─beadarray::`Detection<-`(`*tmp*`, value = `<dbl[,2]>`)
3. └─Biobase::assayDataElementReplace(object, "Detection", value)
4. └─Biobase:::.validate_assayDataElementReplace(obj, value)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'beadlevel.Rmd' failed with diagnostics:
object and replacement value have different dimensions
--- failed re-building ‘beadlevel.Rmd’
--- re-building ‘beadsummary.Rmd’ using rmarkdown
Quitting from beadsummary.Rmd:148-157 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `addFeatureData()`:
! Could not load the annotation package illuminaHumanv3.db
---
Backtrace:
▆
1. └─beadarray::addFeatureData(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'beadsummary.Rmd' failed with diagnostics:
Could not load the annotation package illuminaHumanv3.db
--- failed re-building ‘beadsummary.Rmd’
SUMMARY: processing the following files failed:
‘beadlevel.Rmd’ ‘beadsummary.Rmd’
Error: Vignette re-building failed.
Execution halted