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This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4878
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4663
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 131/2366HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bambu 3.15.0  (landing page)
Ying Chen
Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026)
git_url: https://git.bioconductor.org/packages/bambu
git_branch: devel
git_last_commit: 2e4f96d
git_last_commit_date: 2026-04-28 08:54:10 -0400 (Tue, 28 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped
See other builds for bambu in R Universe.

BUILD results for bambu on taishan

To the developers/maintainers of the bambu package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bambu.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: bambu
Version: 3.15.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data bambu
StartedAt: 2026-05-05 01:47:40 -0000 (Tue, 05 May 2026)
EndedAt: 2026-05-05 01:49:16 -0000 (Tue, 05 May 2026)
EllapsedTime: 96.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data bambu
###
##############################################################################
##############################################################################


* checking for file ‘bambu/DESCRIPTION’ ... OK
* preparing ‘bambu’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘bambu.Rmd’ using rmarkdown

Quitting from bambu.Rmd:56-69 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `xgb.set.config()`:
! [01:49:16] src/c_api/c_api.cc:165: Unknown global parameters: { nthread }
Stack trace:
  [bt] (0) /home/biocbuild/R/R-4.5.0/site-library/xgboost/libs/xgboost.so(+0x55c80) [0xffff7f295c80]
  [bt] (1) /home/biocbuild/R/R-4.5.0/site-library/xgboost/libs/xgboost.so(XGBSetGlobalConfig+0x5cc) [0xffff7f496f58]
  [bt] (2) /home/biocbuild/R/R-4.5.0/site-library/xgboost/libs/xgboost.so(XGBSetGlobalConfig_R+0x24) [0xffff7f28fa44]
  [bt] (3) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0xfe68c) [0xffff92c6e68c]
  [bt] (4) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0x141814) [0xffff92cb1814]
  [bt] (5) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0x14a944) [0xffff92cba944]
  [bt] (6) /home/biocbuild/R/R-4.5.0/lib/libR.so(Rf_eval+0x23c) [0xffff92cbacfc]
  [bt] (7) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0x14cea8) [0xffff92cbcea8]
  [bt] (8) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0x14db80) [0xffff92cbdb80]

---
Backtrace:
    ▆
 1. └─bambu::bambu(...)
 2.   └─xgboost::xgb.set.config(nthread = 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'bambu.Rmd' failed with diagnostics:
[01:49:16] src/c_api/c_api.cc:165: Unknown global parameters: { nthread }
Stack trace:
  [bt] (0) /home/biocbuild/R/R-4.5.0/site-library/xgboost/libs/xgboost.so(+0x55c80) [0xffff7f295c80]
  [bt] (1) /home/biocbuild/R/R-4.5.0/site-library/xgboost/libs/xgboost.so(XGBSetGlobalConfig+0x5cc) [0xffff7f496f58]
  [bt] (2) /home/biocbuild/R/R-4.5.0/site-library/xgboost/libs/xgboost.so(XGBSetGlobalConfig_R+0x24) [0xffff7f28fa44]
  [bt] (3) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0xfe68c) [0xffff92c6e68c]
  [bt] (4) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0x141814) [0xffff92cb1814]
  [bt] (5) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0x14a944) [0xffff92cba944]
  [bt] (6) /home/biocbuild/R/R-4.5.0/lib/libR.so(Rf_eval+0x23c) [0xffff92cbacfc]
  [bt] (7) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0x14cea8) [0xffff92cbcea8]
  [bt] (8) /home/biocbuild/R/R-4.5.0/lib/libR.so(+0x14db80) [0xffff92cbdb80]


--- failed re-building ‘bambu.Rmd’

SUMMARY: processing the following file failed:
  ‘bambu.Rmd’

Error: Vignette re-building failed.
Execution halted