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This page was generated on 2025-11-21 11:39 -0500 (Fri, 21 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4829
lconwaymacOS 12.7.6 Montereyx86_64R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" 4602
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4566
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 113/2327HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
asuri 0.99.18  (landing page)
Alberto Berral-Gonzalez
Snapshot Date: 2025-11-20 13:40 -0500 (Thu, 20 Nov 2025)
git_url: https://git.bioconductor.org/packages/asuri
git_branch: devel
git_last_commit: 4be3e09
git_last_commit_date: 2025-10-28 05:46:33 -0500 (Tue, 28 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  YES
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  YES
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  YES


CHECK results for asuri on kjohnson3

To the developers/maintainers of the asuri package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/asuri.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: asuri
Version: 0.99.18
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:asuri.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings asuri_0.99.18.tar.gz
StartedAt: 2025-11-20 18:31:50 -0500 (Thu, 20 Nov 2025)
EndedAt: 2025-11-20 18:34:57 -0500 (Thu, 20 Nov 2025)
EllapsedTime: 187.3 seconds
RetCode: 0
Status:   OK  
CheckDir: asuri.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:asuri.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings asuri_0.99.18.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/asuri.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘asuri/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘asuri’ version ‘0.99.18’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘asuri’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
plotKM        12.550  1.332  14.527
prefilterSAM   7.779  1.756  10.700
genePheno      8.507  0.328   9.133
plotProbClass  7.192  0.261   7.900
plotBoxplot    7.163  0.270   7.860
geneSurv       7.088  0.279   7.737
plotLambda     5.739  0.997   7.164
patientRisk    5.750  0.931   7.082
plotBetas      5.570  1.074   7.094
plotSigmoid    5.395  1.072   6.887
plotLogRank    5.374  0.983   6.805
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

asuri.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL asuri
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘asuri’ ...
** this is package ‘asuri’ version ‘0.99.18’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: asuri
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (asuri)

Tests output


Example timings

asuri.Rcheck/asuri-Ex.timings

nameusersystemelapsed
genePheno8.5070.3289.133
geneSurv7.0880.2797.737
patientRisk5.7500.9317.082
plotBetas5.5701.0747.094
plotBoxplot7.1630.2707.860
plotKM12.550 1.33214.527
plotLambda5.7390.9977.164
plotLogRank5.3740.9836.805
plotProbClass7.1920.2617.900
plotSigmoid5.3951.0726.887
predict_PatientRisk0.0250.0050.030
predict_SurvCurve0.0440.0110.062
prefilterSAM 7.779 1.75610.700