Multiple platform build/check report for BioC 3.23 - BUILD results for alabaster.base on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4876
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"	4574
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for alabaster.base on nebbiolo1

To the developers/maintainers of the alabaster.base package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/alabaster.base.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: alabaster.base

Version: 1.11.3

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data alabaster.base

StartedAt: 2026-03-25 16:16:46 -0400 (Wed, 25 Mar 2026)

EndedAt: 2026-03-25 16:16:52 -0400 (Wed, 25 Mar 2026)

EllapsedTime: 6.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data alabaster.base
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* checking for file ‘alabaster.base/DESCRIPTION’ ... OK
* preparing ‘alabaster.base’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘alabaster.base’ ...
** this is package ‘alabaster.base’ version ‘1.11.3’
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rhdf5lib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rhdf5lib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c check_csv.cpp -o check_csv.o
In file included from ../inst/include/comservatory/read.hpp:7,
                 from ../inst/include/comservatory/comservatory.hpp:16,
                 from check_csv.cpp:2:
../inst/include/comservatory/Parser.hpp:16:10: fatal error: byteme/PerByte.hpp: No such file or directory
   16 | #include "byteme/PerByte.hpp"
      |          ^~~~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [/home/biocbuild/bbs-3.23-bioc/R/etc/Makeconf:197: check_csv.o] Error 1
ERROR: compilation failed for package ‘alabaster.base’
* removing ‘/tmp/RtmpS7Vxnc/Rinst27828430c9a58e/alabaster.base’
      -----------------------------------
ERROR: package installation failed