| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-04-20 11:37 -0400 (Mon, 20 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4961 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4690 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2247/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TFEA.ChIP 1.31.0 (landing page) Yosra Berrouayel
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
| See other builds for TFEA.ChIP in R Universe. | ||||||||||||||
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To the developers/maintainers of the TFEA.ChIP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFEA.ChIP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TFEA.ChIP |
| Version: 1.31.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:TFEA.ChIP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings TFEA.ChIP_1.31.0.tar.gz |
| StartedAt: 2026-04-19 22:41:22 -0400 (Sun, 19 Apr 2026) |
| EndedAt: 2026-04-19 22:43:35 -0400 (Sun, 19 Apr 2026) |
| EllapsedTime: 132.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TFEA.ChIP.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:TFEA.ChIP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings TFEA.ChIP_1.31.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/TFEA.ChIP.Rcheck’
* using R version 4.6.0 alpha (2026-04-08 r89818)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-20 02:41:22 UTC
* using option ‘--no-vignettes’
* checking for file ‘TFEA.ChIP/DESCRIPTION’ ... OK
* this is package ‘TFEA.ChIP’ version ‘1.31.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TFEA.ChIP’ can be installed ... OK
* checking installed package size ... INFO
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 5.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rankTFs 5.654 0.086 5.802
GSEA_run 4.965 0.079 5.094
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
TFEA.ChIP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL TFEA.ChIP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘TFEA.ChIP’ ... ** this is package ‘TFEA.ChIP’ version ‘1.31.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFEA.ChIP)
TFEA.ChIP.Rcheck/TFEA.ChIP-Ex.timings
| name | user | system | elapsed | |
| GSEA_ESpermutations | 0 | 0 | 0 | |
| GSEA_EnrichmentScore | 0.000 | 0.001 | 0.000 | |
| GSEA_run | 4.965 | 0.079 | 5.094 | |
| GeneID2entrez | 0.228 | 0.008 | 0.239 | |
| Select_genes | 0.023 | 0.006 | 0.031 | |
| analysis_from_table | 1.328 | 0.065 | 1.403 | |
| contingency_matrix | 0.996 | 0.038 | 1.042 | |
| getCMstats | 1.446 | 0.047 | 1.500 | |
| get_chip_index | 0.017 | 0.011 | 0.027 | |
| makeChIPGeneDB | 0.033 | 0.000 | 0.033 | |
| matrixDB_to_listDB | 0 | 0 | 0 | |
| metaanalysis_fx | 0.251 | 0.032 | 0.289 | |
| plot_RES | 0.767 | 0.056 | 0.827 | |
| preprocessInputData | 0.478 | 0.114 | 0.607 | |
| rankTFs | 5.654 | 0.086 | 5.802 | |
| set_user_data | 0.218 | 0.004 | 0.223 | |
| txt2GR | 0.009 | 0.001 | 0.010 | |