| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-07 11:33 -0500 (Sat, 07 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4453 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3376 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2150/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SuperCellCyto 1.1.0 (landing page) Givanna Putri
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for SuperCellCyto in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SuperCellCyto package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SuperCellCyto.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SuperCellCyto |
| Version: 1.1.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SuperCellCyto |
| StartedAt: 2026-03-06 21:46:34 -0500 (Fri, 06 Mar 2026) |
| EndedAt: 2026-03-06 21:48:21 -0500 (Fri, 06 Mar 2026) |
| EllapsedTime: 107.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SuperCellCyto
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* checking for file ‘SuperCellCyto/DESCRIPTION’ ... OK
* preparing ‘SuperCellCyto’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘SuperCellCyto.Rmd’ using rmarkdown
--- finished re-building ‘SuperCellCyto.Rmd’
--- re-building ‘how_to_prepare_data.Rmd’ using rmarkdown
Quitting from how_to_prepare_data.Rmd:195-223 [load_fcs_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'flowCore'
---
Backtrace:
▆
1. └─base::library(flowCore)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'how_to_prepare_data.Rmd' failed with diagnostics:
there is no package called 'flowCore'
--- failed re-building ‘how_to_prepare_data.Rmd’
--- re-building ‘interoperability_with_sce.Rmd’ using rmarkdown
--- finished re-building ‘interoperability_with_sce.Rmd’
--- re-building ‘interoperability_with_seurat.Rmd’ using rmarkdown
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Using method 'umap'
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[----|----|----|----|----|----|----|----|----|----|
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Using method 'umap'
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--- finished re-building ‘interoperability_with_seurat.Rmd’
--- re-building ‘using_supercellcyto_for_stratified_summarising.Rmd’ using rmarkdown
--- finished re-building ‘using_supercellcyto_for_stratified_summarising.Rmd’
SUMMARY: processing the following file failed:
‘how_to_prepare_data.Rmd’
Error: Vignette re-building failed.
Execution halted