Multiple platform build/check report for BioC 3.22 - INSTALL results for Structstrings on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4814
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4603
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4547
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4553
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for Structstrings on kjohnson3

To the developers/maintainers of the Structstrings package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Structstrings.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Structstrings

Version: 1.25.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Structstrings

StartedAt: 2025-09-19 15:08:12 -0400 (Fri, 19 Sep 2025)

EndedAt: 2025-09-19 15:08:12 -0400 (Fri, 19 Sep 2025)

EllapsedTime: 0.3 seconds

RetCode: 1

Status: ERROR

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Structstrings
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘Structstrings’ ...
** this is package ‘Structstrings’ version ‘1.25.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/S4Vectors/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c DotBracketDataFrame_class.c -o DotBracketDataFrame_class.o
DotBracketDataFrame_class.c:8:17: error: use of undeclared identifier 'new_DataFrame'; did you mean 'new_DFrame'?
  PROTECT(ans = new_DataFrame("DotBracketDFrame", 
                ^~~~~~~~~~~~~
                new_DFrame
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s)      Rf_protect(s)
                                   ^
/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/S4Vectors/include/S4Vectors_interface.h:750:6: note: 'new_DFrame' declared here
SEXP new_DFrame(
     ^
1 error generated.
make: *** [DotBracketDataFrame_class.o] Error 1
ERROR: compilation failed for package ‘Structstrings’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Structstrings’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Structstrings’