| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-01 11:33 -0400 (Sat, 01 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4774 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2073/2321 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SplineDV 1.3.0 (landing page) Shreyan Gupta
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the SplineDV package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SplineDV.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SplineDV |
| Version: 1.3.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SplineDV |
| StartedAt: 2025-10-31 20:24:47 -0400 (Fri, 31 Oct 2025) |
| EndedAt: 2025-10-31 20:25:28 -0400 (Fri, 31 Oct 2025) |
| EllapsedTime: 41.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SplineDV
###
##############################################################################
##############################################################################
* checking for file ‘SplineDV/DESCRIPTION’ ... OK
* preparing ‘SplineDV’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘SplineDV.Rmd’ using rmarkdown
Quitting from SplineDV.Rmd:64-67 [LoadingExampleData]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h5_read_attribute()`:
! argument "bit64conversion" is missing, with no default
---
Backtrace:
▆
1. └─scRNAseq::fetchDataset("zilionis-lung-2019", "2023-12-20", path = "mouse")
2. └─alabaster.base::altReadObject(...)
3. └─scRNAseq (local) FUN(path, ...)
4. └─alabaster.base::readObject(...)
5. └─alabaster.sce (local) meth(path, metadata = metadata, ...)
6. └─alabaster.se::readRangedSummarizedExperiment(...)
7. └─alabaster.se::readSummarizedExperiment(...)
8. └─alabaster.base::altReadObject(...)
9. └─scRNAseq (local) FUN(path, ...)
10. └─alabaster.base::readObject(...)
11. └─alabaster.matrix (local) meth(path, metadata = metadata, ...)
12. └─(function() {...
13. └─alabaster.base::h5_read_attribute(ghandle, "type")
14. └─rhdf5::H5Aread(ahandle, bit64conversion = bit64conversion)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'SplineDV.Rmd' failed with diagnostics:
argument "bit64conversion" is missing, with no default
--- failed re-building ‘SplineDV.Rmd’
SUMMARY: processing the following file failed:
‘SplineDV.Rmd’
Error: Vignette re-building failed.
Execution halted