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This page was generated on 2025-08-15 12:07 -0400 (Fri, 15 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4554
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4535
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2054/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpectriPy 0.99.8  (landing page)
Johannes Rainer
Snapshot Date: 2025-08-14 13:45 -0400 (Thu, 14 Aug 2025)
git_url: https://git.bioconductor.org/packages/SpectriPy
git_branch: devel
git_last_commit: 99baf1c
git_last_commit_date: 2025-07-16 07:09:00 -0400 (Wed, 16 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
palomino8Windows Server 2022 Datacenter / x64  TIMEOUT    OK    ERROR    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  


CHECK results for SpectriPy on palomino8

To the developers/maintainers of the SpectriPy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SpectriPy
Version: 0.99.8
Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SpectriPy.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SpectriPy_0.99.8.tar.gz
StartedAt: 2025-08-15 08:15:22 -0400 (Fri, 15 Aug 2025)
EndedAt: 2025-08-15 08:15:28 -0400 (Fri, 15 Aug 2025)
EllapsedTime: 6.6 seconds
RetCode: 1
Status:   ERROR  
CheckDir: SpectriPy.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SpectriPy.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SpectriPy_0.99.8.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SpectriPy/DESCRIPTION' ... OK
* this is package 'SpectriPy' version '0.99.8'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SpectriPy' can be installed ... ERROR
Installation failed.
See 'F:/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  'F:/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck/00check.log'
for details.


Installation output

SpectriPy.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL SpectriPy
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library'
* installing *source* package 'SpectriPy' ...
** this is package 'SpectriPy' version '0.99.8'
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Downloading fonttools (2.1MiB)
 Downloaded fonttools
Installed 40 packages in 21.35s
C:\Users\BIOCBU~1\AppData\Local\R\cache\R\RETICU~1\uv\cache\ARCHIV~1\_0ANXA~1\Lib\site-packages\pubchempy.py:563: SyntaxWarning: "is not" with 'int' literal. Did you mean "!="?
  if self.charge is not 0:
python:         C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx/Scripts/python.exe
libpython:      C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/python/cpython-3.12.9-windows-x86_64-none/python312.dll
pythonhome:     C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx
virtualenv:     C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx/Scripts/activate_this.py
version:        3.12.9 (main, Mar 17 2025, 21:06:20) [MSC v.1943 64 bit (AMD64)]
Architecture:   64bit
numpy:          C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx/Lib/site-packages/numpy
numpy_version:  2.2.6

NOTE: Python version was forced by py_require()
** testing if installed package can be loaded from final location

Tests output


Example timings