Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-15 12:07 -0400 (Fri, 15 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4554 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2054/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SpectriPy 0.99.8 (landing page) Johannes Rainer
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | TIMEOUT | OK | ERROR | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the SpectriPy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SpectriPy |
Version: 0.99.8 |
Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SpectriPy.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SpectriPy_0.99.8.tar.gz |
StartedAt: 2025-08-15 08:15:22 -0400 (Fri, 15 Aug 2025) |
EndedAt: 2025-08-15 08:15:28 -0400 (Fri, 15 Aug 2025) |
EllapsedTime: 6.6 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: SpectriPy.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SpectriPy.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SpectriPy_0.99.8.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck' * using R version 4.5.1 (2025-06-13 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'SpectriPy/DESCRIPTION' ... OK * this is package 'SpectriPy' version '0.99.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SpectriPy' can be installed ... ERROR Installation failed. See 'F:/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck/00install.out' for details. * DONE Status: 1 ERROR See 'F:/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck/00check.log' for details.
SpectriPy.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL SpectriPy ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library' * installing *source* package 'SpectriPy' ... ** this is package 'SpectriPy' version '0.99.8' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Downloading fonttools (2.1MiB) Downloaded fonttools Installed 40 packages in 21.35s C:\Users\BIOCBU~1\AppData\Local\R\cache\R\RETICU~1\uv\cache\ARCHIV~1\_0ANXA~1\Lib\site-packages\pubchempy.py:563: SyntaxWarning: "is not" with 'int' literal. Did you mean "!="? if self.charge is not 0: python: C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx/Scripts/python.exe libpython: C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/python/cpython-3.12.9-windows-x86_64-none/python312.dll pythonhome: C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx virtualenv: C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx/Scripts/activate_this.py version: 3.12.9 (main, Mar 17 2025, 21:06:20) [MSC v.1943 64 bit (AMD64)] Architecture: 64bit numpy: C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx/Lib/site-packages/numpy numpy_version: 2.2.6 NOTE: Python version was forced by py_require() ** testing if installed package can be loaded from final location