Build/check report for BioC 3.23 - BUILD results for SGCP on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4428
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BUILD results for SGCP on nebbiolo1

To the developers/maintainers of the SGCP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SGCP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SGCP

Version: 1.11.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SGCP

StartedAt: 2025-10-30 19:01:42 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 19:02:53 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 71.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SGCP
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* checking for file ‘SGCP/DESCRIPTION’ ... OK
* preparing ‘SGCP’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘SGCP.Rmd’ using rmarkdown

Quitting from SGCP.Rmd:395-398 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `print()`:
! unused argument (useS4 = FALSE)
---
Backtrace:
     ▆
  1. ├─SGCP::SGCP_ezPLOT(...)
  2. │ └─SGCP:::SGCP_plot2excel(...)
  3. │   ├─methods::show(pl)
  4. │   └─methods::show(pl)
  5. │     └─methods::showDefault(object)
  6. │       ├─base::print(object, useS4 = FALSE)
  7. │       └─base::print.default(object, useS4 = FALSE)
  8. ├─base (local) `<fn>`(x, useS4 = FALSE)
  9. └─ggplot2:::print.ggproto(x, useS4 = FALSE)
 10.   └─x$print(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SGCP.Rmd' failed with diagnostics:
unused argument (useS4 = FALSE)
--- failed re-building ‘SGCP.Rmd’

SUMMARY: processing the following file failed:
  ‘SGCP.Rmd’

Error: Vignette re-building failed.
Execution halted