Wei Shi
| Snapshot Date: 2026-05-21 13:45 -0400 (Thu, 21 May 2026) |
| git_url: https://git.bioconductor.org/packages/Rsubread |
| git_branch: devel |
| git_last_commit: 582c820 |
| git_last_commit_date: 2026-05-21 01:57:51 -0400 (Thu, 21 May 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-22 11:36 -0400 (Fri, 22 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4936 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4621 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1866/2378 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rsubread 2.27.2 (landing page) Wei Shi
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | WARNINGS | | |||||||||
| See other builds for Rsubread in R Universe. | ||||||||||||||
|
To the developers/maintainers of the Rsubread package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rsubread.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Rsubread |
| Version: 2.27.2 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 Rsubread |
| StartedAt: 2026-05-21 19:58:42 -0400 (Thu, 21 May 2026) |
| EndedAt: 2026-05-21 20:04:56 -0400 (Thu, 21 May 2026) |
| EllapsedTime: 374.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 Rsubread ### ############################################################################## ############################################################################## * checking for file ‘Rsubread/DESCRIPTION’ ... OK * preparing ‘Rsubread’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘Rsubread.Rnw’ using Sweave trying URL 'https://shilab-bioinformatics.github.io/cellCounts-Example/cellCounts-Example.zip' Content type 'application/x-zip-compressed' length 74690393 bytes (71.2 MB) ================================================== downloaded 71.2 MB Error: processing vignette 'Rsubread.Rnw' failed with diagnostics: chunk 7 Error in cellCounts(paste0(temp.dir, "/chr1"), sample.sheet, nthreads = 1, : The devel version is not for general use. Please install the released version. --- failed re-building ‘Rsubread.Rnw’ SUMMARY: processing the following file failed: ‘Rsubread.Rnw’ Error: Vignette re-building failed. Execution halted