Back to Multiple platform build/check report for BioC 3.22:   simplified   long
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2025-08-30 12:05 -0400 (Sat, 30 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4615
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4562
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4541
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1740/2320HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RESOLVE 1.11.1  (landing page)
Luca De Sano
Snapshot Date: 2025-08-29 13:45 -0400 (Fri, 29 Aug 2025)
git_url: https://git.bioconductor.org/packages/RESOLVE
git_branch: devel
git_last_commit: 1c78569
git_last_commit_date: 2025-07-24 19:04:31 -0400 (Thu, 24 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  ERROR    ERROR  skipped


CHECK results for RESOLVE on nebbiolo2

To the developers/maintainers of the RESOLVE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RESOLVE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RESOLVE
Version: 1.11.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings RESOLVE_1.11.1.tar.gz
StartedAt: 2025-08-30 02:16:35 -0400 (Sat, 30 Aug 2025)
EndedAt: 2025-08-30 02:30:56 -0400 (Sat, 30 Aug 2025)
EllapsedTime: 861.0 seconds
RetCode: 0
Status:   OK  
CheckDir: RESOLVE.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings RESOLVE_1.11.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/RESOLVE.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘RESOLVE/DESCRIPTION’ ... OK
* this is package ‘RESOLVE’ version ‘1.11.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RESOLVE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
signaturesSignificance  133.072  0.595 133.667
signaturesCV             96.971  0.522  97.494
signaturesDecomposition  74.013  0.246  74.260
signaturesAssignment     38.231  0.304  38.537
getMNVCounts             12.634  0.216  12.850
signaturesClustering      9.946  0.107  10.052
getIDCounts               5.366  0.155   5.589
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

RESOLVE.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL RESOLVE
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘RESOLVE’ ...
** this is package ‘RESOLVE’ version ‘1.11.1’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RESOLVE)

Tests output

RESOLVE.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> Sys.setenv("R_TESTS" = "")
> 
> library("testthat")
> library("RESOLVE")
> 
> test_check("RESOLVE")
[ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ]

[ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ]
> 
> proc.time()
   user  system elapsed 
185.201   2.315 187.513 

Example timings

RESOLVE.Rcheck/RESOLVE-Ex.timings

nameusersystemelapsed
associationAlterations0.7320.0200.752
associationPrognosis0.1570.0000.158
associationSignatures1.0980.0021.101
getCNCounts0.0120.0000.012
getIDCounts5.3660.1555.589
getMNVCounts12.634 0.21612.850
getSBSCounts1.2100.2694.035
groupsCNPlot2.5340.0142.548
groupsCXPlot2.5550.1992.755
groupsIDPlot3.7650.0983.863
groupsMNVPlot3.2300.0673.297
groupsSBSPlot2.9570.0212.978
patientsCNPlot1.160.001.16
patientsCXPlot0.5490.0000.549
patientsIDPlot1.7440.0181.761
patientsMNVPlot1.1690.0021.171
patientsSBSPlot0.7580.0010.759
signaturesAssignment38.231 0.30438.537
signaturesCNPlot1.7210.0331.753
signaturesCV96.971 0.52297.494
signaturesCXPlot0.8190.0090.828
signaturesClustering 9.946 0.10710.052
signaturesDecomposition74.013 0.24674.260
signaturesIDPlot2.6500.0392.689
signaturesMNVPlot1.7280.0011.730
signaturesSBSPlot1.1760.0021.178
signaturesSignificance133.072 0.595133.667