Job van Riet
| Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/ProteoDisco |
| git_branch: devel |
| git_last_commit: 583baa5 |
| git_last_commit_date: 2025-10-29 11:11:51 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4957 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4686 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1687/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ProteoDisco 1.17.0 (landing page) Job van Riet
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
| See other builds for ProteoDisco in R Universe. | ||||||||||||||
|
To the developers/maintainers of the ProteoDisco package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ProteoDisco.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: ProteoDisco |
| Version: 1.17.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteoDisco |
| StartedAt: 2026-04-17 01:17:25 -0000 (Fri, 17 Apr 2026) |
| EndedAt: 2026-04-17 01:17:40 -0000 (Fri, 17 Apr 2026) |
| EllapsedTime: 15.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteoDisco
###
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* checking for file ‘ProteoDisco/DESCRIPTION’ ... OK
* preparing ‘ProteoDisco’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘ProteoDisco’ ...
** this is package ‘ProteoDisco’ version ‘1.17.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import ‘dplyr::rename’ by ‘plyr::rename’ when loading ‘ProteoDisco’
Warning: replacing previous import ‘dplyr::count’ by ‘plyr::count’ when loading ‘ProteoDisco’
Warning: replacing previous import ‘dplyr::failwith’ by ‘plyr::failwith’ when loading ‘ProteoDisco’
Warning: replacing previous import ‘dplyr::id’ by ‘plyr::id’ when loading ‘ProteoDisco’
Warning: replacing previous import ‘dplyr::summarize’ by ‘plyr::summarize’ when loading ‘ProteoDisco’
Warning: replacing previous import ‘dplyr::summarise’ by ‘plyr::summarise’ when loading ‘ProteoDisco’
Warning: replacing previous import ‘dplyr::mutate’ by ‘plyr::mutate’ when loading ‘ProteoDisco’
Warning: replacing previous import ‘dplyr::desc’ by ‘plyr::desc’ when loading ‘ProteoDisco’
Warning: replacing previous import ‘dplyr::arrange’ by ‘plyr::arrange’ when loading ‘ProteoDisco’
Error: package or namespace load failed for ‘GenomicFeatures’:
class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
Error: package or namespace load failed for ‘Rsamtools’:
class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
Failed with error: ‘package ‘Rsamtools’ could not be loaded’
Error: package or namespace load failed for ‘rtracklayer’:
class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'
Failed with error: ‘package ‘rtracklayer’ could not be loaded’
Error in setClassUnion("DNAStringSet_OR_BSgenome", c("DNAStringSet", "BSgenome")) :
the member classes must be defined: not true of "BSgenome"
Error: unable to load R code in package ‘ProteoDisco’
Execution halted
ERROR: lazy loading failed for package ‘ProteoDisco’
* removing ‘/home/biocbuild/tmp/RtmpX4CnRL/Rinstf8e907ed49b26/ProteoDisco’
-----------------------------------
ERROR: package installation failed