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This page was generated on 2025-10-31 08:34 -0400 (Fri, 31 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1507/2321HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OSTA.data 1.3.0  (landing page)
Yixing E. Dong
Snapshot Date: 2025-10-30 13:40 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/OSTA.data
git_branch: devel
git_last_commit: e225783
git_last_commit_date: 2025-10-29 11:34:45 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for OSTA.data on nebbiolo1

To the developers/maintainers of the OSTA.data package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OSTA.data.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: OSTA.data
Version: 1.3.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OSTA.data
StartedAt: 2025-10-30 18:18:15 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 18:18:58 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 43.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OSTA.data
###
##############################################################################
##############################################################################


* checking for file ‘OSTA.data/DESCRIPTION’ ... OK
* preparing ‘OSTA.data’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘OSTA.data.Rmd’ using rmarkdown

Quitting from OSTA.data.Rmd:112-124 [vis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.getSpatialPath()`:
! The 'spatial' directory was not found.
---
Backtrace:
    ▆
 1. └─VisiumIO::TENxVisium(...)
 2.   └─VisiumIO:::.find_convert_resources(...)
 3.     ├─base::dirname(...)
 4.     └─VisiumIO:::.getSpatialPath(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'OSTA.data.Rmd' failed with diagnostics:
The 'spatial' directory was not found.
--- failed re-building ‘OSTA.data.Rmd’

SUMMARY: processing the following file failed:
  ‘OSTA.data.Rmd’

Error: Vignette re-building failed.
Execution halted