| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-05 11:33 -0400 (Tue, 05 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4844 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1453/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NetActivity 1.15.0 (landing page) Carlos Ruiz-Arenas
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for NetActivity in R Universe. | ||||||||||||||
|
To the developers/maintainers of the NetActivity package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NetActivity.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: NetActivity |
| Version: 1.15.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 NetActivity |
| StartedAt: 2026-05-04 19:08:15 -0400 (Mon, 04 May 2026) |
| EndedAt: 2026-05-04 19:09:07 -0400 (Mon, 04 May 2026) |
| EllapsedTime: 52.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 NetActivity
###
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* checking for file ‘NetActivity/DESCRIPTION’ ... OK
* preparing ‘NetActivity’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘NetActivity.Rmd’ using rmarkdown
Quitting from NetActivity.Rmd:140-152 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unable to open database file
---
Backtrace:
▆
1. ├─AnnotationDbi::mapIds(...)
2. └─AnnotationDbi::mapIds(...)
3. └─AnnotationDbi::mapIds_base(x, keys, column, keytype, ..., multiVals = multiVals)
4. ├─AnnotationDbi::select(...)
5. └─AnnotationDbi::select(...)
6. └─AnnotationDbi:::.select(...)
7. └─AnnotationDbi::testSelectArgs(...)
8. └─AnnotationDbi:::.testForValidKeys(x, keys, keytype, fks)
9. ├─AnnotationDbi::keys(x, keytype)
10. └─AnnotationDbi::keys(x, keytype)
11. └─AnnotationDbi:::smartKeys(x = x, keytype = keytype, ..., FUN = .keys)
12. └─AnnotationDbi:::.keys(x, keytype)
13. └─AnnotationDbi:::.legacyKeys(x, keytype)
14. └─AnnotationDbi:::.queryForKeys(x, keytype)
15. └─AnnotationDbi:::dbQuery(dbconn(x), sql)
16. ├─DBI::dbGetQuery(conn, SQL)
17. └─DBI::dbGetQuery(conn, SQL)
18. └─DBI (local) .local(conn, statement, ...)
19. ├─DBI::dbFetch(rs, n = n, ...)
20. └─RSQLite::dbFetch(rs, n = n, ...)
21. └─RSQLite (local) .local(res, n, ...)
22. └─RSQLite:::result_fetch(res@ptr, n = n)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'NetActivity.Rmd' failed with diagnostics:
unable to open database file
--- failed re-building ‘NetActivity.Rmd’
SUMMARY: processing the following file failed:
‘NetActivity.Rmd’
Error: Vignette re-building failed.
Execution halted