Laurent Gatto
| Snapshot Date: 2026-01-22 13:40 -0500 (Thu, 22 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/MsExperiment |
| git_branch: devel |
| git_last_commit: 18b0bf2 |
| git_last_commit_date: 2025-10-29 11:18:49 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-23 11:35 -0500 (Fri, 23 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4808 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4542 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1376/2345 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MsExperiment 1.13.0 (landing page) Laurent Gatto
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the MsExperiment package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsExperiment.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MsExperiment |
| Version: 1.13.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsExperiment |
| StartedAt: 2026-01-22 17:04:25 -0500 (Thu, 22 Jan 2026) |
| EndedAt: 2026-01-22 17:08:31 -0500 (Thu, 22 Jan 2026) |
| EllapsedTime: 245.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsExperiment
###
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* checking for file ‘MsExperiment/DESCRIPTION’ ... OK
* preparing ‘MsExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MsExperiment.Rmd’ using rmarkdown
Quitting from MsExperiment.Rmd:96-100 [fls]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `fix_issue_17()`:
! Can't access URL(s):
ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD022816/QEP2LC6_HeLa_50ng_251120_01-calib.mzML
ftp://ftp.pride.ebi.ac.uk/pride-archive/2021/03/PXD022816/QEP2LC6_HeLa_50ng_251120_01-calib.mzML
---
Backtrace:
▆
1. ├─rpx::pxget(px, i)
2. └─rpx::pxget(px, i)
3. └─rpx (local) .local(object, ...)
4. └─rpx:::pxget1(uris[i], cache)
5. └─rpx:::get_url(url)
6. └─rpx:::fix_issue_17(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MsExperiment.Rmd' failed with diagnostics:
Can't access URL(s):
ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD022816/QEP2LC6_HeLa_50ng_251120_01-calib.mzML
ftp://ftp.pride.ebi.ac.uk/pride-archive/2021/03/PXD022816/QEP2LC6_HeLa_50ng_251120_01-calib.mzML
--- failed re-building ‘MsExperiment.Rmd’
SUMMARY: processing the following file failed:
‘MsExperiment.Rmd’
Error: Vignette re-building failed.
Execution halted