| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-12-19 11:34 -0500 (Fri, 19 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4875 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1331/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Modstrings 1.27.1 (landing page) Felix G.M. Ernst
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the Modstrings package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Modstrings.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Modstrings |
| Version: 1.27.1 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Modstrings |
| StartedAt: 2025-12-18 18:39:30 -0500 (Thu, 18 Dec 2025) |
| EndedAt: 2025-12-18 18:39:54 -0500 (Thu, 18 Dec 2025) |
| EllapsedTime: 24.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Modstrings
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* checking for file ‘Modstrings/DESCRIPTION’ ... OK
* preparing ‘Modstrings’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ModDNAString-alphabet.Rmd’ using rmarkdown
--- finished re-building ‘ModDNAString-alphabet.Rmd’
--- re-building ‘ModRNAString-alphabet.Rmd’ using rmarkdown
--- finished re-building ‘ModRNAString-alphabet.Rmd’
--- re-building ‘Modstrings.Rmd’ using rmarkdown
Quitting from Modstrings.Rmd:177-182 [object_comparison]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'what' in selecting a method for function 'do.call': object '.Generic' not found
---
Backtrace:
▆
1. ├─r == ModRNAString(r)
2. ├─r == ModRNAString(r)
3. │ └─Modstrings:::.compare_ModString(e1, e2)
4. │ └─Biostrings:::.Compare_XString_XString(.Generic, e1, e2)
5. │ └─BiocGenerics::do.call(op, list(x, y))
6. └─base::.handleSimpleError(...)
7. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Modstrings.Rmd' failed with diagnostics:
error in evaluating the argument 'what' in selecting a method for function 'do.call': object '.Generic' not found
--- failed re-building ‘Modstrings.Rmd’
SUMMARY: processing the following file failed:
‘Modstrings.Rmd’
Error: Vignette re-building failed.
Execution halted