Shuangbin Xu
| Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/MicrobiotaProcess |
| git_branch: devel |
| git_last_commit: 916270c |
| git_last_commit_date: 2026-04-01 23:31:10 -0400 (Wed, 01 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4957 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4686 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1322/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MicrobiotaProcess 1.23.1 (landing page) Shuangbin Xu
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for MicrobiotaProcess in R Universe. | ||||||||||||||
|
To the developers/maintainers of the MicrobiotaProcess package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MicrobiotaProcess.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: MicrobiotaProcess |
| Version: 1.23.1 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MicrobiotaProcess |
| StartedAt: 2026-04-17 00:37:17 -0000 (Fri, 17 Apr 2026) |
| EndedAt: 2026-04-17 00:40:19 -0000 (Fri, 17 Apr 2026) |
| EllapsedTime: 182.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MicrobiotaProcess
###
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* checking for file ‘MicrobiotaProcess/DESCRIPTION’ ... OK
* preparing ‘MicrobiotaProcess’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MicrobiotaProcess.Rmd’ using rmarkdown
Quitting from MicrobiotaProcess.Rmd:244-275 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `modifyList()`:
! is.list(x) is not TRUE
---
Backtrace:
▆
1. └─aplot::plot_list(gglist = list(h1, h2), tag_levels = "A")
2. └─aplot::as.patchwork(res)
3. ├─base::do.call(plot_list2, y)
4. └─aplot (local) `<fn>`(...)
5. └─utils::modifyList(pt, list(size = tag_size))
6. └─base::stopifnot(is.list(x), is.list(val))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MicrobiotaProcess.Rmd' failed with diagnostics:
is.list(x) is not TRUE
--- failed re-building ‘MicrobiotaProcess.Rmd’
SUMMARY: processing the following file failed:
‘MicrobiotaProcess.Rmd’
Error: Vignette re-building failed.
Execution halted