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This page was generated on 2026-03-09 11:34 -0400 (Mon, 09 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4508
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" 3381
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1283/2360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MetMashR 1.5.0  (landing page)
Gavin Rhys Lloyd
Snapshot Date: 2026-03-08 13:40 -0400 (Sun, 08 Mar 2026)
git_url: https://git.bioconductor.org/packages/MetMashR
git_branch: devel
git_last_commit: 9dbb552
git_last_commit_date: 2025-10-29 11:32:41 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for MetMashR in R Universe.

BUILD results for MetMashR on kjohnson3

To the developers/maintainers of the MetMashR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MetMashR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MetMashR
Version: 1.5.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR
StartedAt: 2026-03-08 15:58:13 -0400 (Sun, 08 Mar 2026)
EndedAt: 2026-03-08 15:59:22 -0400 (Sun, 08 Mar 2026)
EllapsedTime: 69.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR
###
##############################################################################
##############################################################################


* checking for file ‘MetMashR/DESCRIPTION’ ... OK
* preparing ‘MetMashR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Extending_MetMashR.Rmd’ using rmarkdown

Quitting from Extending_MetMashR.Rmd:52-60 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'metabolomicsWorkbenchR'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(...)
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─base::library(metabolomicsWorkbenchR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Extending_MetMashR.Rmd' failed with diagnostics:
there is no package called 'metabolomicsWorkbenchR'
--- failed re-building ‘Extending_MetMashR.Rmd’

--- re-building ‘annotate_mixtures.Rmd’ using rmarkdown
2026-03-08 15:58:36.863 R[98412:117674285] XType: Using static font registry.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-9-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-10-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-14-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-15-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-17-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-18-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-21-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-22-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-23-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-28-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-29-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-30-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/annotate_mixtures_files/figure-html/unnamed-chunk-31-1.png" but not available.
--- finished re-building ‘annotate_mixtures.Rmd’

--- re-building ‘exploring_mtox.Rmd’ using rmarkdown
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/exploring_mtox_files/figure-html/unnamed-chunk-7-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/exploring_mtox_files/figure-html/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpXr9RHV/Rbuild16c551ae2de34/MetMashR/vignettes/exploring_mtox_files/figure-html/unnamed-chunk-10-1.png" but not available.
--- finished re-building ‘exploring_mtox.Rmd’

--- re-building ‘using_MetMashR.Rmd’ using rmarkdown
--- finished re-building ‘using_MetMashR.Rmd’

SUMMARY: processing the following file failed:
  ‘Extending_MetMashR.Rmd’

Error: Vignette re-building failed.
Execution halted