Thomas Naake
| Snapshot Date: 2025-12-12 13:40 -0500 (Fri, 12 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/MatrixQCvis |
| git_branch: devel |
| git_last_commit: 0b99d49 |
| git_last_commit_date: 2025-10-29 11:09:24 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-12-13 11:46 -0500 (Sat, 13 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4874 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4582 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1191/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MatrixQCvis 1.19.0 (landing page) Thomas Naake
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the MatrixQCvis package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MatrixQCvis.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MatrixQCvis |
| Version: 1.19.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MatrixQCvis |
| StartedAt: 2025-12-12 18:35:19 -0500 (Fri, 12 Dec 2025) |
| EndedAt: 2025-12-12 18:36:50 -0500 (Fri, 12 Dec 2025) |
| EllapsedTime: 91.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MatrixQCvis
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* checking for file ‘MatrixQCvis/DESCRIPTION’ ... OK
* preparing ‘MatrixQCvis’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MatrixQCvis.Rmd’ using rmarkdown
Quitting from MatrixQCvis.Rmd:269-272 [hist_sample]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_download()`:
! Timeout was reached [cdn.plot.ly]:
SSL connection timeout
---
Backtrace:
▆
1. ├─plotly::partial_bundle(hist_sample(tbl, category = "type"))
2. │ ├─plotly::plotly_build(p)
3. │ └─plotly:::plotly_build.plotly(p)
4. │ └─plotly:::verify_partial_bundle(p)
5. │ └─curl::curl_download(...)
6. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MatrixQCvis.Rmd' failed with diagnostics:
Timeout was reached [cdn.plot.ly]:
SSL connection timeout
--- failed re-building ‘MatrixQCvis.Rmd’
SUMMARY: processing the following file failed:
‘MatrixQCvis.Rmd’
Error: Vignette re-building failed.
Execution halted