Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-09-20 12:06 -0400 (Sat, 20 Sep 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4814 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4603 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4547 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4553 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1157/2333 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Macarron 1.13.2 (landing page) Sagun Maharjan
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the Macarron package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Macarron.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Macarron |
Version: 1.13.2 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Macarron |
StartedAt: 2025-09-19 16:50:05 -0400 (Fri, 19 Sep 2025) |
EndedAt: 2025-09-19 16:52:14 -0400 (Fri, 19 Sep 2025) |
EllapsedTime: 128.5 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Macarron ### ############################################################################## ############################################################################## * checking for file ‘Macarron/DESCRIPTION’ ... OK * preparing ‘Macarron’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Macarron.Rmd’ using rmarkdown 2025-09-19 16:51:22.013 R[74847:277073659] XType: Using static font registry. Quitting from Macarron.Rmd:92-106 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! <ggplot2::labels> object is invalid: - every label must be named. --- Backtrace: ▆ 1. └─Macarron::Macarron(...) 2. └─Macarron::calQval(...) 3. └─Maaslin2::Maaslin2(...) 4. └─Maaslin2:::maaslin2_association_plots(...) 5. └─ggplot2::labs("") 6. └─ggplot2::class_labels(args) 7. └─S7::new_object(labels) 8. └─S7::validate(object, recursive = !parent_validated) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Macarron.Rmd' failed with diagnostics: <ggplot2::labels> object is invalid: - every label must be named. --- failed re-building ‘Macarron.Rmd’ SUMMARY: processing the following file failed: ‘Macarron.Rmd’ Error: Vignette re-building failed. Execution halted