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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MSnbase
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* checking for file ‘MSnbase/DESCRIPTION’ ... OK
* preparing ‘MSnbase’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘v01-MSnbase-demo.Rmd’ using rmarkdown

Quitting from v01-MSnbase-demo.Rmd:210-212 [writeMSData]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `copyWriteMSData()`:
! Error checking parameter 'header': 'x' is missing one or more required columns: seqNum, acquisitionNum, msLevel, polarity, peaksCount, totIonCurrent, retentionTime, basePeakMZ, basePeakIntensity, collisionEnergy, electronBeamEnergy, ionisationEnergy, lowMZ, highMZ, precursorScanNum, precursorMZ, precursorCharge, precursorIntensity, mergedScan, mergedResultScanNum, mergedResultStartScanNum, mergedResultEndScanNum, injectionTime, filterString, centroided, ionMobilityDriftTime, isolationWindowTargetMZ, isolationWindowLowerOffset, isolationWindowUpperOffset, scanWindowLowerLimit, scanWindowUpperLimit
---
Backtrace:
     ▆
  1. ├─ProtGenerics::writeMSData(...)
  2. └─MSnbase::writeMSData(...)
  3.   └─MSnbase (local) .local(object, file, ...)
  4.     └─MSnbase:::.writeMSData(...)
  5.       └─BiocGenerics::mapply(...)
  6.         ├─BiocGenerics (local) standardGeneric("mapply")
  7.         │ ├─BiocGenerics::eval(mc, env)
  8.         │ └─base::eval(mc, env)
  9.         │   └─base::eval(mc, env)
 10.         └─base::mapply(...)
 11.           └─MSnbase (local) `<fn>`(...)
 12.             └─mzR::copyWriteMSData(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'v01-MSnbase-demo.Rmd' failed with diagnostics:
Error checking parameter 'header': 'x' is missing one or more required columns: seqNum, acquisitionNum, msLevel, polarity, peaksCount, totIonCurrent, retentionTime, basePeakMZ, basePeakIntensity, collisionEnergy, electronBeamEnergy, ionisationEnergy, lowMZ, highMZ, precursorScanNum, precursorMZ, precursorCharge, precursorIntensity, mergedScan, mergedResultScanNum, mergedResultStartScanNum, mergedResultEndScanNum, injectionTime, filterString, centroided, ionMobilityDriftTime, isolationWindowTargetMZ, isolationWindowLowerOffset, isolationWindowUpperOffset, scanWindowLowerLimit, scanWindowUpperLimit
--- failed re-building ‘v01-MSnbase-demo.Rmd’

--- re-building ‘v02-MSnbase-io.Rmd’ using rmarkdown
--- finished re-building ‘v02-MSnbase-io.Rmd’

--- re-building ‘v03-MSnbase-centroiding.Rmd’ using rmarkdown
2025-08-29 17:05:34.997 R[31512:122264621] XType: Using static font registry.
--- finished re-building ‘v03-MSnbase-centroiding.Rmd’

--- re-building ‘v04-benchmarking.Rmd’ using rmarkdown
--- finished re-building ‘v04-benchmarking.Rmd’

--- re-building ‘v05-MSnbase-development.Rmd’ using rmarkdown
--- finished re-building ‘v05-MSnbase-development.Rmd’

SUMMARY: processing the following file failed:
  ‘v01-MSnbase-demo.Rmd’

Error: Vignette re-building failed.
Execution halted