Yingcheng Luo
| Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026) |
| git_url: https://git.bioconductor.org/packages/HiSpaR |
| git_branch: devel |
| git_last_commit: 14a3af9 |
| git_last_commit_date: 2026-04-28 09:06:36 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 998/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiSpaR 1.1.0 (landing page) Yingcheng Luo
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
| See other builds for HiSpaR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HiSpaR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiSpaR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: HiSpaR |
| Version: 1.1.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiSpaR |
| StartedAt: 2026-05-05 03:44:01 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 03:44:51 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 50.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiSpaR
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* checking for file ‘HiSpaR/DESCRIPTION’ ... OK
* preparing ‘HiSpaR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘HiSpaR’ ...
** this is package ‘HiSpaR’ version ‘1.1.0’
** using staged installation
Configuring HiSpaR for platform: Linux
Detected Linux
Armadillo pkg-config not found, using defaults
Checking for OpenMP support...
OpenMP support: NO
WARNING: OpenMP is required for HiSpaR. Package may not function correctly.
Writing src/Makevars
Configuration complete
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
using C++17
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fopenmp -fPIC -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fopenmp -fPIC -g -O2 -Wall -Werror=format-security -c chromosome.cpp -o chromosome.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fopenmp -fPIC -g -O2 -Wall -Werror=format-security -c hispa_rcpp.cpp -o hispa_rcpp.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o HiSpaR.so RcppExports.o chromosome.o hispa_rcpp.o -larmadillo -lopenblas -lgfortran -lm -L/home/biocbuild/R/R-4.5.0/lib -lR
/usr/bin/ld: cannot find -larmadillo: No such file or directory
collect2: error: ld returned 1 exit status
make: *** [/home/biocbuild/R/R-4.5.0/share/make/shlib.mk:10: HiSpaR.so] Error 1
ERROR: compilation failed for package ‘HiSpaR’
* removing ‘/home/biocbuild/tmp/RtmpHAVKYX/Rinst2b9ec61b7f8de4/HiSpaR’
-----------------------------------
ERROR: package installation failed