| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-04 11:35 -0400 (Sat, 04 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.6.0 alpha (2026-03-30 r89742) | 4900 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-03-28 r89739) | 4634 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1017/2381 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-04-03 20:14:00 -0400 (Fri, 03 Apr 2026) |
| EndedAt: 2026-04-03 20:17:15 -0400 (Fri, 03 Apr 2026) |
| EllapsedTime: 195.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 alpha (2026-03-28 r89739)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-04 00:14:00 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 17.184 0.194 17.580
corr_plot 17.103 0.133 17.348
FSmethod 16.726 0.098 17.160
pred_ensembel 6.288 0.207 5.766
enrichfindP 0.208 0.045 12.474
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 alpha (2026-03-28 r89739)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 97.680195
final value 94.354396
converged
Fitting Repeat 2
# weights: 103
initial value 96.623986
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.144052
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 109.982707
final value 94.323812
converged
Fitting Repeat 5
# weights: 103
initial value 100.677795
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 98.142876
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.054852
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 100.582698
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 107.981398
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 96.117445
final value 94.354396
converged
Fitting Repeat 1
# weights: 507
initial value 114.164020
iter 10 value 94.354397
final value 94.354396
converged
Fitting Repeat 2
# weights: 507
initial value 101.412240
iter 10 value 92.968645
iter 20 value 84.488718
iter 30 value 84.451010
iter 40 value 84.011613
final value 84.011208
converged
Fitting Repeat 3
# weights: 507
initial value 99.540856
iter 10 value 93.661518
final value 93.659488
converged
Fitting Repeat 4
# weights: 507
initial value 129.821877
iter 10 value 94.484216
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 103.372370
iter 10 value 94.234878
final value 93.772973
converged
Fitting Repeat 1
# weights: 103
initial value 111.113273
iter 10 value 94.505497
iter 20 value 94.258814
iter 30 value 91.413820
iter 40 value 84.063798
iter 50 value 83.430401
iter 60 value 82.438012
iter 70 value 82.099738
iter 80 value 81.928302
iter 90 value 81.841878
iter 100 value 81.822093
final value 81.822093
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.676389
iter 10 value 94.487536
iter 20 value 94.200706
iter 30 value 90.092476
iter 40 value 87.927632
iter 50 value 87.722929
iter 60 value 82.449041
iter 70 value 81.755578
iter 80 value 81.602877
iter 90 value 81.328632
iter 100 value 81.082652
final value 81.082652
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 127.477555
iter 10 value 91.056557
iter 20 value 87.211038
iter 30 value 85.193776
iter 40 value 84.032570
iter 50 value 83.476197
iter 60 value 83.331690
final value 83.330406
converged
Fitting Repeat 4
# weights: 103
initial value 97.778986
iter 10 value 91.926710
iter 20 value 88.319574
iter 30 value 87.553732
iter 40 value 85.539873
iter 50 value 84.316326
iter 60 value 83.572426
iter 70 value 83.335098
iter 80 value 83.330134
final value 83.329518
converged
Fitting Repeat 5
# weights: 103
initial value 97.441293
iter 10 value 94.510673
iter 20 value 94.486385
iter 30 value 93.756981
iter 40 value 93.688164
iter 50 value 87.406770
iter 60 value 86.642179
iter 70 value 86.033788
iter 80 value 85.893064
iter 90 value 83.921283
iter 100 value 83.770298
final value 83.770298
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 112.808543
iter 10 value 94.329262
iter 20 value 89.334684
iter 30 value 85.242702
iter 40 value 84.475399
iter 50 value 83.691869
iter 60 value 81.526426
iter 70 value 81.193890
iter 80 value 80.495084
iter 90 value 80.300654
iter 100 value 80.170807
final value 80.170807
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.588993
iter 10 value 94.410317
iter 20 value 93.759342
iter 30 value 93.695485
iter 40 value 90.094408
iter 50 value 89.085183
iter 60 value 83.005253
iter 70 value 82.472169
iter 80 value 80.964426
iter 90 value 80.076166
iter 100 value 79.734989
final value 79.734989
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.751301
iter 10 value 86.657527
iter 20 value 83.518649
iter 30 value 81.948375
iter 40 value 81.003062
iter 50 value 80.033664
iter 60 value 79.907745
iter 70 value 79.886010
iter 80 value 79.789785
iter 90 value 79.656202
iter 100 value 79.541713
final value 79.541713
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.855449
iter 10 value 95.755290
iter 20 value 92.693456
iter 30 value 83.769865
iter 40 value 82.925064
iter 50 value 82.082685
iter 60 value 81.547638
iter 70 value 81.040937
iter 80 value 80.185823
iter 90 value 79.708746
iter 100 value 79.597268
final value 79.597268
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.024531
iter 10 value 94.489938
iter 20 value 94.459147
iter 30 value 92.003886
iter 40 value 85.352800
iter 50 value 84.431431
iter 60 value 82.947242
iter 70 value 81.533341
iter 80 value 81.353761
iter 90 value 80.881366
iter 100 value 80.511853
final value 80.511853
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.848089
iter 10 value 94.078366
iter 20 value 86.020625
iter 30 value 84.911483
iter 40 value 81.238189
iter 50 value 80.249723
iter 60 value 79.914413
iter 70 value 79.804844
iter 80 value 79.447236
iter 90 value 78.996185
iter 100 value 78.924940
final value 78.924940
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.430135
iter 10 value 93.425054
iter 20 value 85.912094
iter 30 value 85.477204
iter 40 value 85.159623
iter 50 value 84.071827
iter 60 value 82.506018
iter 70 value 81.623366
iter 80 value 80.930121
iter 90 value 80.000427
iter 100 value 79.530816
final value 79.530816
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.493398
iter 10 value 97.350950
iter 20 value 94.454228
iter 30 value 85.319614
iter 40 value 81.582891
iter 50 value 81.228910
iter 60 value 80.863625
iter 70 value 80.682299
iter 80 value 80.373373
iter 90 value 79.970113
iter 100 value 79.764430
final value 79.764430
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 133.468892
iter 10 value 94.763358
iter 20 value 84.133384
iter 30 value 82.990321
iter 40 value 82.265811
iter 50 value 81.258412
iter 60 value 80.616634
iter 70 value 80.221246
iter 80 value 79.951035
iter 90 value 79.502766
iter 100 value 79.424335
final value 79.424335
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.702384
iter 10 value 95.546260
iter 20 value 93.797381
iter 30 value 87.830769
iter 40 value 83.237381
iter 50 value 82.153788
iter 60 value 81.203336
iter 70 value 79.661373
iter 80 value 79.310720
iter 90 value 79.129606
iter 100 value 78.948724
final value 78.948724
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.253031
final value 94.313633
converged
Fitting Repeat 2
# weights: 103
initial value 99.289431
final value 94.485834
converged
Fitting Repeat 3
# weights: 103
initial value 101.245671
final value 94.355861
converged
Fitting Repeat 4
# weights: 103
initial value 94.528092
final value 94.485724
converged
Fitting Repeat 5
# weights: 103
initial value 98.162052
final value 94.485808
converged
Fitting Repeat 1
# weights: 305
initial value 97.630020
iter 10 value 92.842346
iter 20 value 85.324403
iter 30 value 84.746302
iter 40 value 84.295712
iter 50 value 82.368990
iter 60 value 82.344281
iter 70 value 82.341005
iter 80 value 82.339286
iter 90 value 81.386759
iter 100 value 81.193790
final value 81.193790
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.568977
final value 94.489551
converged
Fitting Repeat 3
# weights: 305
initial value 112.798485
iter 10 value 94.489036
iter 20 value 92.984797
iter 30 value 87.729539
iter 40 value 84.669148
iter 50 value 83.829921
iter 60 value 83.827939
iter 60 value 83.827939
final value 83.827939
converged
Fitting Repeat 4
# weights: 305
initial value 108.484629
iter 10 value 94.426827
iter 20 value 94.359282
iter 30 value 94.354694
iter 40 value 93.911193
iter 50 value 93.578458
iter 60 value 85.567190
iter 70 value 82.924091
iter 80 value 82.379385
iter 90 value 82.375923
final value 82.367124
converged
Fitting Repeat 5
# weights: 305
initial value 99.284053
iter 10 value 93.781627
iter 20 value 93.289802
iter 30 value 93.287606
iter 40 value 93.170053
iter 50 value 93.165110
iter 60 value 92.336431
iter 70 value 81.893610
iter 80 value 81.402229
iter 90 value 81.390536
iter 100 value 81.389450
final value 81.389450
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 115.297163
iter 10 value 94.362673
iter 20 value 93.908599
iter 30 value 93.660061
iter 40 value 93.641649
final value 93.640663
converged
Fitting Repeat 2
# weights: 507
initial value 106.600320
iter 10 value 94.492579
iter 20 value 94.127941
iter 30 value 88.129390
iter 40 value 84.898204
iter 50 value 84.754217
iter 60 value 84.626997
iter 70 value 84.624572
iter 80 value 84.622310
iter 90 value 84.504318
iter 100 value 82.181441
final value 82.181441
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 96.577908
iter 10 value 94.320205
iter 20 value 93.393903
iter 30 value 88.686675
iter 40 value 81.791495
iter 50 value 81.510816
iter 60 value 80.663501
iter 70 value 80.139642
iter 80 value 80.106366
final value 80.100404
converged
Fitting Repeat 4
# weights: 507
initial value 97.853702
iter 10 value 94.070461
iter 20 value 93.817889
iter 30 value 90.078549
iter 40 value 84.967186
iter 50 value 84.743362
iter 60 value 84.307435
iter 70 value 84.306703
iter 80 value 84.303047
final value 84.302808
converged
Fitting Repeat 5
# weights: 507
initial value 100.682004
iter 10 value 94.362845
iter 20 value 93.661764
iter 30 value 82.322926
iter 40 value 81.869474
iter 50 value 81.853110
iter 60 value 81.005886
iter 70 value 80.172556
iter 80 value 80.140629
iter 90 value 80.139587
iter 100 value 80.109044
final value 80.109044
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.770872
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 107.549562
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.508329
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 104.833855
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 109.023766
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 99.129598
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 95.136547
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 94.146468
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 97.387844
iter 10 value 93.840819
iter 20 value 93.786709
iter 20 value 93.786708
iter 20 value 93.786708
final value 93.786708
converged
Fitting Repeat 5
# weights: 305
initial value 98.179190
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 95.060984
final value 94.008696
converged
Fitting Repeat 2
# weights: 507
initial value 122.106726
iter 10 value 92.964626
iter 20 value 92.748846
iter 30 value 92.748057
iter 30 value 92.748056
final value 92.748052
converged
Fitting Repeat 3
# weights: 507
initial value 95.551345
iter 10 value 92.815239
iter 20 value 88.684971
iter 30 value 88.643751
final value 88.643550
converged
Fitting Repeat 4
# weights: 507
initial value 101.200237
final value 94.008695
converged
Fitting Repeat 5
# weights: 507
initial value 113.033611
iter 10 value 93.782313
iter 20 value 89.327444
iter 30 value 87.410229
iter 40 value 87.065059
iter 50 value 87.004292
iter 60 value 84.702063
iter 70 value 84.297678
iter 80 value 84.084340
iter 90 value 84.039228
iter 100 value 84.038316
final value 84.038316
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.764054
iter 10 value 94.056190
iter 20 value 94.011996
iter 30 value 93.074093
iter 40 value 87.674245
iter 50 value 86.599734
iter 60 value 85.703751
iter 70 value 85.372560
iter 80 value 85.356287
iter 80 value 85.356287
iter 80 value 85.356287
final value 85.356287
converged
Fitting Repeat 2
# weights: 103
initial value 96.728872
iter 10 value 94.068535
iter 20 value 94.001504
iter 30 value 89.248630
iter 40 value 88.755469
iter 50 value 86.464789
iter 60 value 85.701722
iter 70 value 84.531273
iter 80 value 84.020624
iter 90 value 83.493297
iter 100 value 82.827177
final value 82.827177
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 102.797944
iter 10 value 94.028685
iter 20 value 92.290622
iter 30 value 87.742867
iter 40 value 86.027196
iter 50 value 85.908739
iter 60 value 85.597295
iter 70 value 84.735043
iter 80 value 84.541301
final value 84.541036
converged
Fitting Repeat 4
# weights: 103
initial value 101.203149
iter 10 value 94.936374
iter 20 value 94.056413
iter 30 value 93.815338
iter 40 value 86.735010
iter 50 value 85.959724
iter 60 value 85.689899
iter 70 value 85.068673
iter 80 value 84.557380
iter 90 value 84.043970
final value 84.031070
converged
Fitting Repeat 5
# weights: 103
initial value 105.128246
iter 10 value 94.057699
iter 20 value 94.039707
iter 30 value 93.934881
iter 40 value 91.756250
iter 50 value 86.042788
iter 60 value 85.808490
iter 70 value 85.472634
iter 80 value 84.570765
iter 90 value 84.039791
iter 100 value 84.031072
final value 84.031072
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 109.888297
iter 10 value 94.123098
iter 20 value 87.070112
iter 30 value 85.796316
iter 40 value 85.541012
iter 50 value 85.247608
iter 60 value 84.143767
iter 70 value 83.570559
iter 80 value 82.012675
iter 90 value 81.501065
iter 100 value 81.398921
final value 81.398921
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.119880
iter 10 value 94.042389
iter 20 value 93.811919
iter 30 value 91.573106
iter 40 value 88.579254
iter 50 value 87.967853
iter 60 value 87.356211
iter 70 value 86.838374
iter 80 value 86.344518
iter 90 value 84.174446
iter 100 value 82.821877
final value 82.821877
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.588757
iter 10 value 93.949307
iter 20 value 90.126035
iter 30 value 86.824857
iter 40 value 84.264675
iter 50 value 82.599996
iter 60 value 82.299602
iter 70 value 81.956842
iter 80 value 81.081152
iter 90 value 80.958070
iter 100 value 80.854795
final value 80.854795
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.882039
iter 10 value 93.967456
iter 20 value 89.019244
iter 30 value 88.620805
iter 40 value 87.274294
iter 50 value 87.106923
iter 60 value 85.430329
iter 70 value 83.892244
iter 80 value 83.693551
iter 90 value 83.624680
iter 100 value 83.205452
final value 83.205452
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.965475
iter 10 value 93.670590
iter 20 value 88.114232
iter 30 value 86.880815
iter 40 value 86.218831
iter 50 value 85.030258
iter 60 value 84.895039
iter 70 value 84.037307
iter 80 value 82.851325
iter 90 value 82.076782
iter 100 value 81.725617
final value 81.725617
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.648000
iter 10 value 93.641594
iter 20 value 89.557881
iter 30 value 86.045468
iter 40 value 85.797812
iter 50 value 85.190114
iter 60 value 84.197527
iter 70 value 83.084106
iter 80 value 82.571278
iter 90 value 82.303177
iter 100 value 82.086777
final value 82.086777
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.192990
iter 10 value 94.355703
iter 20 value 93.262051
iter 30 value 87.349575
iter 40 value 85.132005
iter 50 value 82.493745
iter 60 value 81.812354
iter 70 value 81.653465
iter 80 value 81.512419
iter 90 value 81.503740
iter 100 value 81.480193
final value 81.480193
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.007429
iter 10 value 94.043903
iter 20 value 87.787573
iter 30 value 86.646802
iter 40 value 85.403392
iter 50 value 84.250425
iter 60 value 82.336614
iter 70 value 81.301215
iter 80 value 81.077564
iter 90 value 80.880289
iter 100 value 80.836874
final value 80.836874
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.147971
iter 10 value 94.071221
iter 20 value 94.046969
iter 30 value 93.857790
iter 40 value 87.683425
iter 50 value 85.537367
iter 60 value 85.043250
iter 70 value 82.897026
iter 80 value 82.483938
iter 90 value 82.263461
iter 100 value 81.699266
final value 81.699266
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.045917
iter 10 value 94.089219
iter 20 value 93.150448
iter 30 value 86.018834
iter 40 value 83.133289
iter 50 value 82.778666
iter 60 value 82.258962
iter 70 value 81.645963
iter 80 value 81.206606
iter 90 value 80.997435
iter 100 value 80.890361
final value 80.890361
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.101977
final value 94.054796
converged
Fitting Repeat 2
# weights: 103
initial value 96.292925
final value 94.054560
converged
Fitting Repeat 3
# weights: 103
initial value 94.933526
final value 94.054312
converged
Fitting Repeat 4
# weights: 103
initial value 109.582059
final value 94.018830
converged
Fitting Repeat 5
# weights: 103
initial value 95.100335
final value 94.046080
converged
Fitting Repeat 1
# weights: 305
initial value 105.620714
iter 10 value 94.054829
iter 20 value 90.014502
iter 30 value 87.456549
iter 40 value 86.885384
iter 50 value 86.745880
iter 60 value 86.707512
iter 70 value 86.706006
iter 80 value 86.704462
iter 90 value 86.704164
iter 100 value 86.704045
final value 86.704045
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.990248
iter 10 value 94.013227
iter 20 value 94.008916
iter 30 value 90.601885
iter 40 value 90.326459
iter 50 value 85.851331
iter 60 value 85.847196
iter 70 value 85.716567
iter 80 value 85.557113
iter 90 value 85.006699
iter 100 value 82.018001
final value 82.018001
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.129173
iter 10 value 94.013480
iter 20 value 94.008882
iter 30 value 93.711301
iter 40 value 86.107429
iter 50 value 85.874149
iter 60 value 85.873479
iter 70 value 85.578560
iter 80 value 85.490978
iter 90 value 85.490818
iter 90 value 85.490817
iter 90 value 85.490817
final value 85.490817
converged
Fitting Repeat 4
# weights: 305
initial value 100.606262
iter 10 value 94.015270
iter 20 value 94.010879
iter 30 value 94.009895
final value 94.009853
converged
Fitting Repeat 5
# weights: 305
initial value 105.883152
iter 10 value 94.056170
iter 20 value 90.503658
iter 30 value 88.967683
iter 40 value 88.941995
iter 50 value 87.540743
iter 60 value 86.253990
iter 70 value 85.968031
iter 80 value 85.810008
iter 90 value 85.789583
iter 100 value 85.789457
final value 85.789457
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 95.773276
iter 10 value 94.058766
iter 20 value 94.001755
iter 30 value 92.117403
iter 40 value 91.615880
iter 50 value 91.609322
iter 50 value 91.609321
iter 50 value 91.609321
final value 91.609321
converged
Fitting Repeat 2
# weights: 507
initial value 98.366171
iter 10 value 93.870023
iter 20 value 93.681044
iter 30 value 87.055477
final value 87.042906
converged
Fitting Repeat 3
# weights: 507
initial value 100.534859
iter 10 value 94.016973
iter 20 value 93.980833
iter 30 value 87.436927
final value 87.042530
converged
Fitting Repeat 4
# weights: 507
initial value 119.451586
iter 10 value 93.958386
iter 20 value 93.827962
iter 30 value 91.309872
iter 40 value 86.188359
iter 50 value 85.542015
iter 60 value 85.540976
iter 70 value 85.320881
iter 80 value 85.313709
iter 90 value 85.312809
iter 100 value 85.312587
final value 85.312587
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.393351
iter 10 value 93.984276
iter 20 value 93.981565
iter 30 value 90.912578
iter 40 value 88.321794
iter 50 value 88.240299
iter 60 value 88.238495
iter 70 value 88.237837
final value 88.237792
converged
Fitting Repeat 1
# weights: 103
initial value 100.560452
iter 10 value 86.990823
iter 20 value 86.956011
final value 86.955824
converged
Fitting Repeat 2
# weights: 103
initial value 103.582029
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 102.840563
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.902937
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.409253
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.177347
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 114.897898
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 96.297654
iter 10 value 94.427939
final value 94.427933
converged
Fitting Repeat 4
# weights: 305
initial value 95.285017
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 100.528192
final value 94.467391
converged
Fitting Repeat 1
# weights: 507
initial value 99.832414
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 96.204115
iter 10 value 93.769109
iter 20 value 93.730406
final value 93.729005
converged
Fitting Repeat 3
# weights: 507
initial value 115.746437
final value 94.300045
converged
Fitting Repeat 4
# weights: 507
initial value 101.642215
final value 94.467391
converged
Fitting Repeat 5
# weights: 507
initial value 96.830516
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 96.252993
iter 10 value 94.490134
iter 20 value 88.112959
iter 30 value 84.933366
iter 40 value 84.501496
iter 50 value 84.076976
iter 60 value 83.930780
iter 70 value 83.903617
iter 80 value 83.899083
final value 83.898240
converged
Fitting Repeat 2
# weights: 103
initial value 97.559660
iter 10 value 94.397657
iter 20 value 94.054140
iter 30 value 93.893322
iter 40 value 93.232714
iter 50 value 92.086762
iter 60 value 88.127041
iter 70 value 84.531239
iter 80 value 83.737262
iter 90 value 83.689579
iter 100 value 83.469658
final value 83.469658
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.448190
iter 10 value 94.486002
iter 20 value 91.171346
iter 30 value 85.445538
iter 40 value 84.800230
iter 50 value 84.492123
iter 60 value 84.052108
iter 70 value 83.929025
iter 80 value 83.898254
final value 83.898240
converged
Fitting Repeat 4
# weights: 103
initial value 101.907318
iter 10 value 94.466272
iter 20 value 89.246033
iter 30 value 88.437906
iter 40 value 87.811039
iter 50 value 87.513283
iter 60 value 84.595530
iter 70 value 82.691543
iter 80 value 82.674593
final value 82.674528
converged
Fitting Repeat 5
# weights: 103
initial value 99.251297
iter 10 value 94.542811
iter 20 value 94.381336
iter 30 value 87.541401
iter 40 value 85.324224
iter 50 value 84.486372
iter 60 value 84.441582
iter 70 value 83.927138
iter 80 value 83.898701
iter 90 value 83.898498
iter 100 value 83.898315
final value 83.898315
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 122.904520
iter 10 value 94.384483
iter 20 value 88.676950
iter 30 value 86.557908
iter 40 value 83.661765
iter 50 value 82.618090
iter 60 value 82.321279
iter 70 value 82.168271
iter 80 value 81.909615
iter 90 value 81.708829
iter 100 value 81.650773
final value 81.650773
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 109.304514
iter 10 value 99.970472
iter 20 value 94.522718
iter 30 value 91.578256
iter 40 value 89.282473
iter 50 value 86.499663
iter 60 value 86.321727
iter 70 value 83.810559
iter 80 value 83.221699
iter 90 value 82.928303
iter 100 value 82.317942
final value 82.317942
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.201893
iter 10 value 94.695568
iter 20 value 93.959110
iter 30 value 90.536057
iter 40 value 85.884682
iter 50 value 83.848115
iter 60 value 83.658343
iter 70 value 83.470978
iter 80 value 82.448566
iter 90 value 82.094960
iter 100 value 81.577418
final value 81.577418
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.885614
iter 10 value 94.495891
iter 20 value 86.346122
iter 30 value 85.030809
iter 40 value 84.354937
iter 50 value 83.208193
iter 60 value 81.916490
iter 70 value 81.641707
iter 80 value 81.347583
iter 90 value 81.320345
iter 100 value 81.260617
final value 81.260617
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.073333
iter 10 value 94.508346
iter 20 value 92.849408
iter 30 value 87.332895
iter 40 value 87.088719
iter 50 value 86.246268
iter 60 value 84.605085
iter 70 value 84.522919
iter 80 value 84.477450
iter 90 value 84.402849
iter 100 value 84.312304
final value 84.312304
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.791680
iter 10 value 94.674456
iter 20 value 94.462868
iter 30 value 92.051334
iter 40 value 89.573250
iter 50 value 84.331370
iter 60 value 83.327367
iter 70 value 82.557344
iter 80 value 81.643180
iter 90 value 81.225168
iter 100 value 81.107040
final value 81.107040
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.850960
iter 10 value 95.092148
iter 20 value 94.022805
iter 30 value 90.468704
iter 40 value 87.285908
iter 50 value 84.100627
iter 60 value 82.394344
iter 70 value 81.255361
iter 80 value 81.055833
iter 90 value 80.971515
iter 100 value 80.934239
final value 80.934239
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 127.332612
iter 10 value 94.435164
iter 20 value 91.815718
iter 30 value 91.517311
iter 40 value 91.303533
iter 50 value 90.237276
iter 60 value 86.229883
iter 70 value 84.352764
iter 80 value 83.453147
iter 90 value 83.297850
iter 100 value 83.044888
final value 83.044888
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.184389
iter 10 value 94.366658
iter 20 value 94.287670
iter 30 value 88.881545
iter 40 value 85.936228
iter 50 value 85.505247
iter 60 value 84.150730
iter 70 value 83.117895
iter 80 value 82.301392
iter 90 value 81.520081
iter 100 value 81.272265
final value 81.272265
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.088877
iter 10 value 93.852518
iter 20 value 90.767885
iter 30 value 85.592561
iter 40 value 84.065961
iter 50 value 83.615832
iter 60 value 83.502499
iter 70 value 83.441867
iter 80 value 83.271907
iter 90 value 83.187988
iter 100 value 83.153624
final value 83.153624
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.414044
final value 94.485785
converged
Fitting Repeat 2
# weights: 103
initial value 96.666438
iter 10 value 94.485954
final value 94.484375
converged
Fitting Repeat 3
# weights: 103
initial value 97.311533
final value 94.485969
converged
Fitting Repeat 4
# weights: 103
initial value 116.197988
final value 94.485806
converged
Fitting Repeat 5
# weights: 103
initial value 98.308042
final value 94.485944
converged
Fitting Repeat 1
# weights: 305
initial value 94.828231
iter 10 value 94.370443
iter 20 value 94.368608
iter 30 value 85.710115
final value 85.707314
converged
Fitting Repeat 2
# weights: 305
initial value 115.993419
iter 10 value 94.472099
iter 20 value 92.592632
iter 30 value 83.705305
final value 83.564177
converged
Fitting Repeat 3
# weights: 305
initial value 105.088397
iter 10 value 94.489298
iter 20 value 94.485611
iter 30 value 94.485197
iter 40 value 94.484779
final value 94.484703
converged
Fitting Repeat 4
# weights: 305
initial value 96.869772
iter 10 value 94.370335
iter 20 value 94.365728
iter 30 value 94.289062
iter 40 value 87.709598
iter 50 value 84.683463
iter 60 value 81.351625
iter 70 value 79.766291
iter 80 value 79.520452
iter 90 value 79.511230
iter 100 value 79.329713
final value 79.329713
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 98.380951
iter 10 value 94.317028
iter 20 value 94.312297
iter 30 value 92.531566
final value 92.529527
converged
Fitting Repeat 1
# weights: 507
initial value 112.558461
iter 10 value 94.492319
iter 20 value 94.484409
iter 30 value 91.959629
iter 40 value 86.374353
iter 50 value 86.347480
iter 60 value 86.344025
iter 70 value 86.321543
iter 80 value 85.812764
iter 90 value 85.592877
iter 100 value 85.591721
final value 85.591721
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 102.827605
iter 10 value 94.492821
iter 20 value 94.173598
iter 30 value 86.060600
iter 40 value 83.667679
iter 50 value 83.299177
iter 60 value 83.294966
iter 70 value 83.287556
iter 80 value 83.140414
iter 90 value 82.168165
iter 100 value 81.743156
final value 81.743156
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.164639
iter 10 value 94.492492
iter 20 value 94.422476
iter 30 value 93.967524
iter 40 value 87.172317
iter 50 value 85.711517
iter 60 value 85.706984
iter 70 value 85.703490
iter 80 value 85.533021
iter 90 value 85.526906
iter 100 value 85.524146
final value 85.524146
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 114.712148
iter 10 value 94.492460
iter 20 value 94.420321
iter 30 value 85.752287
iter 40 value 85.709028
iter 50 value 85.708720
iter 60 value 85.708194
iter 70 value 85.705515
iter 80 value 85.701891
final value 85.701314
converged
Fitting Repeat 5
# weights: 507
initial value 109.201050
iter 10 value 93.749873
iter 20 value 90.014995
iter 30 value 82.300909
iter 40 value 82.170180
iter 50 value 82.168378
iter 60 value 82.162462
iter 70 value 82.039825
iter 80 value 80.469107
iter 90 value 79.517195
iter 100 value 79.268760
final value 79.268760
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.059857
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.771405
iter 10 value 93.394928
iter 10 value 93.394928
iter 10 value 93.394928
final value 93.394928
converged
Fitting Repeat 3
# weights: 103
initial value 96.273389
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 112.050941
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 101.856122
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 105.417437
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 100.471623
iter 10 value 85.001364
iter 20 value 83.813939
iter 30 value 83.560845
final value 83.496405
converged
Fitting Repeat 3
# weights: 305
initial value 100.799027
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 95.090911
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 96.851519
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 107.568508
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 120.505517
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 97.388572
iter 10 value 93.932501
final value 93.930685
converged
Fitting Repeat 4
# weights: 507
initial value 119.504801
iter 10 value 93.096126
iter 20 value 92.246081
iter 30 value 92.114235
iter 40 value 92.109854
final value 92.109849
converged
Fitting Repeat 5
# weights: 507
initial value 110.439407
iter 10 value 93.436422
final value 93.394928
converged
Fitting Repeat 1
# weights: 103
initial value 98.519604
iter 10 value 94.488520
iter 20 value 93.702700
iter 30 value 93.689443
iter 40 value 92.950233
iter 50 value 92.824758
iter 60 value 91.673153
iter 70 value 87.869180
iter 80 value 86.192520
iter 90 value 81.983187
iter 100 value 81.512933
final value 81.512933
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.456049
iter 10 value 93.763131
iter 20 value 92.937347
iter 30 value 86.506351
iter 40 value 85.237264
iter 50 value 83.820825
iter 60 value 81.905082
iter 70 value 81.511281
iter 80 value 81.484782
iter 90 value 81.464612
final value 81.464588
converged
Fitting Repeat 3
# weights: 103
initial value 103.240193
iter 10 value 94.488614
iter 20 value 93.678245
iter 30 value 92.615912
iter 40 value 87.762557
iter 50 value 86.879357
iter 60 value 86.240405
iter 70 value 84.493875
iter 80 value 83.013624
iter 90 value 82.904452
iter 100 value 81.673413
final value 81.673413
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 102.321215
iter 10 value 94.399728
iter 20 value 93.724617
iter 30 value 93.679957
iter 40 value 92.751665
iter 50 value 90.456031
iter 60 value 87.224856
iter 70 value 84.195070
iter 80 value 83.817285
iter 90 value 83.438339
iter 100 value 83.413978
final value 83.413978
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 98.373606
iter 10 value 94.486558
iter 20 value 92.990817
iter 30 value 92.947583
iter 40 value 85.565792
iter 50 value 82.372744
iter 60 value 81.593947
iter 70 value 81.481896
final value 81.481824
converged
Fitting Repeat 1
# weights: 305
initial value 100.394414
iter 10 value 93.580667
iter 20 value 92.631561
iter 30 value 90.784941
iter 40 value 88.852681
iter 50 value 85.301166
iter 60 value 84.960046
iter 70 value 84.635814
iter 80 value 82.467429
iter 90 value 81.414468
iter 100 value 81.200096
final value 81.200096
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.306976
iter 10 value 97.050944
iter 20 value 91.715062
iter 30 value 86.037172
iter 40 value 85.008225
iter 50 value 84.570715
iter 60 value 83.986946
iter 70 value 83.155745
iter 80 value 81.570997
iter 90 value 81.506088
iter 100 value 81.346092
final value 81.346092
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.035733
iter 10 value 94.451842
iter 20 value 87.474816
iter 30 value 85.766194
iter 40 value 82.309414
iter 50 value 81.041649
iter 60 value 80.809975
iter 70 value 80.668544
iter 80 value 80.535660
iter 90 value 80.482974
iter 100 value 80.477536
final value 80.477536
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.727853
iter 10 value 95.188498
iter 20 value 86.151327
iter 30 value 84.181032
iter 40 value 83.942352
iter 50 value 83.418276
iter 60 value 82.512917
iter 70 value 82.217382
iter 80 value 81.557645
iter 90 value 80.916554
iter 100 value 80.701713
final value 80.701713
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.961013
iter 10 value 94.585088
iter 20 value 89.873883
iter 30 value 87.839447
iter 40 value 85.613030
iter 50 value 84.081298
iter 60 value 83.867972
iter 70 value 83.696145
iter 80 value 83.476605
iter 90 value 83.040928
iter 100 value 81.953553
final value 81.953553
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.735754
iter 10 value 95.033808
iter 20 value 92.937915
iter 30 value 92.840426
iter 40 value 91.041110
iter 50 value 83.525180
iter 60 value 82.535949
iter 70 value 82.276737
iter 80 value 82.116971
iter 90 value 82.091724
iter 100 value 82.023274
final value 82.023274
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.203061
iter 10 value 93.599028
iter 20 value 92.734460
iter 30 value 87.812146
iter 40 value 82.436253
iter 50 value 81.834117
iter 60 value 81.632143
iter 70 value 81.510612
iter 80 value 81.005552
iter 90 value 80.515055
iter 100 value 80.016941
final value 80.016941
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.111306
iter 10 value 92.161645
iter 20 value 85.668232
iter 30 value 83.832993
iter 40 value 81.474895
iter 50 value 80.447187
iter 60 value 80.085891
iter 70 value 79.816260
iter 80 value 79.790185
iter 90 value 79.722281
iter 100 value 79.677903
final value 79.677903
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.903777
iter 10 value 94.684683
iter 20 value 94.147110
iter 30 value 91.569249
iter 40 value 88.142383
iter 50 value 86.838731
iter 60 value 85.194012
iter 70 value 83.127559
iter 80 value 81.011431
iter 90 value 80.568145
iter 100 value 80.537521
final value 80.537521
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.119958
iter 10 value 94.965146
iter 20 value 85.666869
iter 30 value 85.088211
iter 40 value 84.473863
iter 50 value 83.989164
iter 60 value 83.841947
iter 70 value 83.795472
iter 80 value 83.773754
iter 90 value 83.693804
iter 100 value 83.328713
final value 83.328713
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.757379
final value 94.485675
converged
Fitting Repeat 2
# weights: 103
initial value 96.937121
iter 10 value 94.485793
iter 20 value 94.484274
final value 94.484217
converged
Fitting Repeat 3
# weights: 103
initial value 118.740791
iter 10 value 93.569523
iter 20 value 92.896532
iter 30 value 92.836365
iter 40 value 92.825653
final value 92.824395
converged
Fitting Repeat 4
# weights: 103
initial value 96.971539
final value 94.485867
converged
Fitting Repeat 5
# weights: 103
initial value 96.050067
final value 94.485907
converged
Fitting Repeat 1
# weights: 305
initial value 108.986789
iter 10 value 94.489517
iter 20 value 94.483720
iter 30 value 90.312172
iter 40 value 90.296542
iter 50 value 88.711688
iter 60 value 83.699160
iter 70 value 83.683975
iter 80 value 83.580284
iter 90 value 83.304546
iter 100 value 83.302749
final value 83.302749
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 97.447472
iter 10 value 94.490858
iter 20 value 93.209211
iter 30 value 92.638798
iter 40 value 92.634961
iter 50 value 92.631600
iter 60 value 92.622608
iter 70 value 92.620284
iter 70 value 92.620283
iter 70 value 92.620283
final value 92.620283
converged
Fitting Repeat 3
# weights: 305
initial value 109.929528
iter 10 value 94.489057
iter 20 value 94.162444
iter 30 value 92.628408
iter 40 value 92.555225
iter 50 value 84.586065
iter 60 value 82.283772
iter 70 value 81.950025
iter 80 value 81.946660
final value 81.946647
converged
Fitting Repeat 4
# weights: 305
initial value 114.300528
iter 10 value 94.489115
iter 20 value 94.484403
final value 94.484210
converged
Fitting Repeat 5
# weights: 305
initial value 104.903333
iter 10 value 94.476607
iter 20 value 93.639855
iter 30 value 93.559479
iter 40 value 84.239527
iter 50 value 83.657659
final value 83.657582
converged
Fitting Repeat 1
# weights: 507
initial value 108.430186
iter 10 value 94.495834
iter 20 value 94.319352
iter 30 value 88.746536
iter 40 value 86.965194
iter 50 value 86.942883
iter 60 value 86.939740
iter 70 value 85.044307
iter 80 value 81.174413
iter 90 value 80.349403
iter 100 value 79.139971
final value 79.139971
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.643645
iter 10 value 94.518150
iter 20 value 94.500117
iter 30 value 93.501171
iter 40 value 93.418415
iter 50 value 93.400130
iter 60 value 93.399465
iter 70 value 93.395511
final value 93.395461
converged
Fitting Repeat 3
# weights: 507
initial value 106.132992
iter 10 value 93.118458
iter 20 value 86.370469
iter 30 value 84.429295
iter 40 value 83.280186
iter 50 value 83.275953
iter 60 value 83.167584
iter 70 value 82.865524
iter 80 value 82.864096
iter 90 value 82.863298
final value 82.862880
converged
Fitting Repeat 4
# weights: 507
initial value 106.936367
iter 10 value 92.648380
iter 20 value 92.644024
iter 30 value 92.635873
iter 40 value 92.633179
iter 50 value 90.051444
iter 60 value 84.837261
iter 70 value 84.789889
iter 80 value 84.608327
iter 90 value 84.416841
iter 100 value 84.394980
final value 84.394980
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.791834
iter 10 value 94.492293
iter 20 value 93.539196
iter 30 value 92.636635
iter 30 value 92.636634
iter 30 value 92.636634
final value 92.636634
converged
Fitting Repeat 1
# weights: 103
initial value 98.313335
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.175669
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 98.402940
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.876500
iter 10 value 93.994371
iter 20 value 93.988105
final value 93.988096
converged
Fitting Repeat 5
# weights: 103
initial value 97.568322
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 101.844847
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 102.160602
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 94.588574
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 96.527840
final value 93.991526
converged
Fitting Repeat 5
# weights: 305
initial value 104.080486
final value 94.050051
converged
Fitting Repeat 1
# weights: 507
initial value 112.826844
iter 10 value 94.029316
iter 10 value 94.029316
iter 10 value 94.029316
final value 94.029316
converged
Fitting Repeat 2
# weights: 507
initial value 96.531193
iter 10 value 93.116621
iter 20 value 93.081000
final value 93.080991
converged
Fitting Repeat 3
# weights: 507
initial value 106.065397
final value 94.029316
converged
Fitting Repeat 4
# weights: 507
initial value 118.113894
iter 10 value 93.464501
final value 93.464368
converged
Fitting Repeat 5
# weights: 507
initial value 106.175131
iter 10 value 93.992325
iter 20 value 93.991527
iter 20 value 93.991526
iter 20 value 93.991526
final value 93.991526
converged
Fitting Repeat 1
# weights: 103
initial value 102.749130
iter 10 value 93.757344
iter 20 value 87.681238
iter 30 value 86.955219
iter 40 value 85.892569
iter 50 value 82.622447
iter 60 value 80.760354
iter 70 value 79.854465
iter 80 value 79.480646
iter 90 value 78.878676
iter 100 value 78.839745
final value 78.839745
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.897254
iter 10 value 94.049348
iter 20 value 93.324920
iter 30 value 93.153355
iter 40 value 86.358141
iter 50 value 85.671186
iter 60 value 85.642105
iter 70 value 85.579137
iter 80 value 85.565022
iter 90 value 82.617942
iter 100 value 82.569917
final value 82.569917
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.631678
iter 10 value 93.597212
iter 20 value 84.178031
iter 30 value 83.627773
iter 40 value 83.480355
iter 50 value 83.153053
iter 60 value 81.940984
iter 70 value 80.953027
final value 80.917350
converged
Fitting Repeat 4
# weights: 103
initial value 96.591687
iter 10 value 94.030573
iter 20 value 93.852726
iter 30 value 86.143043
iter 40 value 85.282127
iter 50 value 85.109993
iter 60 value 85.002259
iter 70 value 81.520200
iter 80 value 81.375470
iter 90 value 79.656432
iter 100 value 79.418470
final value 79.418470
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 110.740705
iter 10 value 94.037166
iter 20 value 91.174390
iter 30 value 86.143775
iter 40 value 82.452291
iter 50 value 82.065533
iter 60 value 81.736381
iter 70 value 81.403445
iter 80 value 81.286473
final value 81.284409
converged
Fitting Repeat 1
# weights: 305
initial value 105.768193
iter 10 value 86.803396
iter 20 value 82.137954
iter 30 value 81.682453
iter 40 value 81.422845
iter 50 value 81.322066
iter 60 value 81.288852
iter 70 value 81.260160
iter 80 value 79.993773
iter 90 value 79.413628
iter 100 value 79.211418
final value 79.211418
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.386846
iter 10 value 93.705443
iter 20 value 91.192652
iter 30 value 82.514162
iter 40 value 81.659137
iter 50 value 79.588446
iter 60 value 78.339864
iter 70 value 78.052445
iter 80 value 77.805147
iter 90 value 77.734615
iter 100 value 77.677684
final value 77.677684
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 116.153067
iter 10 value 94.062787
iter 20 value 91.405608
iter 30 value 84.005075
iter 40 value 82.582606
iter 50 value 82.470207
iter 60 value 81.659772
iter 70 value 80.415047
iter 80 value 79.220076
iter 90 value 78.350665
iter 100 value 78.211767
final value 78.211767
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.067450
iter 10 value 91.976725
iter 20 value 87.964413
iter 30 value 82.639305
iter 40 value 82.163184
iter 50 value 81.794392
iter 60 value 80.514422
iter 70 value 79.671420
iter 80 value 78.850065
iter 90 value 78.473543
iter 100 value 77.545323
final value 77.545323
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.755458
iter 10 value 94.194364
iter 20 value 93.815028
iter 30 value 90.556219
iter 40 value 88.312456
iter 50 value 84.915279
iter 60 value 82.448948
iter 70 value 79.193398
iter 80 value 78.269065
iter 90 value 77.836260
iter 100 value 77.701320
final value 77.701320
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.539762
iter 10 value 94.574895
iter 20 value 86.549187
iter 30 value 85.549933
iter 40 value 82.839753
iter 50 value 79.942632
iter 60 value 79.434555
iter 70 value 78.693458
iter 80 value 77.927325
iter 90 value 77.530764
iter 100 value 77.276889
final value 77.276889
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.788265
iter 10 value 94.365453
iter 20 value 87.691932
iter 30 value 84.361264
iter 40 value 80.663676
iter 50 value 80.103372
iter 60 value 79.863592
iter 70 value 79.756500
iter 80 value 79.703426
iter 90 value 79.618083
iter 100 value 79.006732
final value 79.006732
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.017710
iter 10 value 94.337245
iter 20 value 93.816978
iter 30 value 86.766802
iter 40 value 85.259397
iter 50 value 82.546612
iter 60 value 81.525131
iter 70 value 81.461322
iter 80 value 81.012743
iter 90 value 79.669026
iter 100 value 78.761409
final value 78.761409
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.423597
iter 10 value 94.095984
iter 20 value 90.956467
iter 30 value 85.678957
iter 40 value 84.639878
iter 50 value 81.855297
iter 60 value 80.461066
iter 70 value 79.600090
iter 80 value 77.858561
iter 90 value 77.744902
iter 100 value 77.608239
final value 77.608239
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.138844
iter 10 value 94.230584
iter 20 value 88.917361
iter 30 value 86.433565
iter 40 value 81.965830
iter 50 value 80.528011
iter 60 value 79.226573
iter 70 value 78.085174
iter 80 value 77.538581
iter 90 value 77.152219
iter 100 value 76.888224
final value 76.888224
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.759972
final value 94.054654
converged
Fitting Repeat 2
# weights: 103
initial value 107.154843
iter 10 value 91.541010
iter 20 value 91.507952
final value 91.507771
converged
Fitting Repeat 3
# weights: 103
initial value 94.387293
final value 94.054522
converged
Fitting Repeat 4
# weights: 103
initial value 95.459459
iter 10 value 94.054511
iter 20 value 86.228137
iter 30 value 84.483588
final value 84.470244
converged
Fitting Repeat 5
# weights: 103
initial value 94.653427
final value 94.054376
converged
Fitting Repeat 1
# weights: 305
initial value 97.377114
iter 10 value 94.037769
iter 20 value 94.003641
iter 30 value 93.806637
iter 40 value 90.781682
iter 50 value 85.853432
iter 60 value 85.102369
iter 70 value 85.089792
iter 80 value 85.069844
iter 90 value 85.064510
iter 100 value 85.062977
final value 85.062977
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 94.227950
iter 10 value 94.038125
iter 20 value 93.989969
iter 30 value 93.917184
final value 93.916227
converged
Fitting Repeat 3
# weights: 305
initial value 94.379113
iter 10 value 94.035428
iter 20 value 94.034013
iter 30 value 94.028641
iter 40 value 93.964898
iter 50 value 93.936524
iter 60 value 93.933305
iter 70 value 93.893058
iter 80 value 93.879681
iter 90 value 93.879259
iter 100 value 93.643750
final value 93.643750
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 95.846561
iter 10 value 93.996428
iter 20 value 93.994168
iter 30 value 93.991183
iter 40 value 93.989906
iter 50 value 93.987187
iter 60 value 88.888617
iter 70 value 82.589219
iter 80 value 82.449892
iter 90 value 82.449117
iter 100 value 82.448218
final value 82.448218
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.766125
iter 10 value 94.058001
iter 20 value 94.052959
iter 30 value 93.683171
iter 40 value 89.257547
iter 50 value 86.648928
iter 60 value 83.170367
iter 70 value 83.040798
iter 80 value 83.037799
iter 90 value 82.381603
iter 100 value 81.505299
final value 81.505299
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 121.562958
iter 10 value 94.041613
iter 20 value 91.949230
iter 30 value 87.955390
iter 40 value 82.155909
iter 50 value 81.594902
iter 60 value 81.523890
iter 70 value 78.057765
iter 80 value 77.378803
iter 90 value 77.362177
iter 100 value 77.225100
final value 77.225100
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 98.691460
iter 10 value 87.069060
iter 20 value 85.322027
iter 30 value 84.448940
iter 40 value 84.050163
iter 50 value 83.992937
iter 60 value 83.990049
iter 70 value 83.987152
iter 80 value 83.986505
iter 90 value 83.985317
iter 100 value 83.984614
final value 83.984614
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 94.591547
iter 10 value 94.057481
iter 20 value 94.044800
iter 30 value 92.708335
final value 92.702108
converged
Fitting Repeat 4
# weights: 507
initial value 101.617523
iter 10 value 94.040740
iter 20 value 93.677231
iter 30 value 84.149432
iter 40 value 84.079890
iter 50 value 83.918259
final value 83.918116
converged
Fitting Repeat 5
# weights: 507
initial value 109.283790
iter 10 value 91.042058
iter 20 value 83.416355
iter 30 value 81.954693
iter 40 value 81.551792
iter 50 value 81.548696
iter 60 value 81.544706
iter 70 value 81.540856
iter 80 value 80.809898
iter 90 value 80.805482
iter 100 value 80.793336
final value 80.793336
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 126.453448
iter 10 value 117.767194
iter 20 value 117.169951
iter 30 value 106.919516
iter 40 value 103.638610
iter 50 value 103.181471
iter 60 value 103.174215
iter 70 value 103.173450
iter 80 value 103.171895
iter 90 value 103.047048
iter 100 value 101.169904
final value 101.169904
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 124.074906
iter 10 value 117.269202
iter 20 value 114.977539
iter 30 value 114.940060
iter 40 value 114.830927
iter 50 value 114.826866
iter 60 value 114.811954
iter 70 value 114.572933
iter 80 value 114.516145
iter 90 value 114.496817
iter 100 value 114.454851
final value 114.454851
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 123.282175
iter 10 value 117.902979
iter 20 value 117.894808
iter 30 value 114.074332
iter 40 value 106.900965
iter 50 value 102.688254
iter 60 value 102.371329
iter 70 value 102.117590
iter 80 value 102.019118
final value 102.018131
converged
Fitting Repeat 4
# weights: 507
initial value 137.491986
iter 10 value 117.898590
iter 20 value 117.890181
iter 30 value 117.584785
iter 40 value 117.552775
final value 117.552768
converged
Fitting Repeat 5
# weights: 507
initial value 153.046088
iter 10 value 112.170252
iter 20 value 106.967396
iter 30 value 103.420953
iter 40 value 103.040798
iter 50 value 103.039118
iter 60 value 102.999613
iter 70 value 102.853354
iter 80 value 101.702490
iter 90 value 100.526457
iter 100 value 100.252963
final value 100.252963
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri Apr 3 20:17:11 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.138 0.736 74.468
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 16.726 | 0.098 | 17.160 | |
| FreqInteractors | 0.155 | 0.008 | 0.162 | |
| calculateAAC | 0.012 | 0.001 | 0.014 | |
| calculateAutocor | 0.133 | 0.009 | 0.145 | |
| calculateCTDC | 0.025 | 0.001 | 0.027 | |
| calculateCTDD | 0.152 | 0.011 | 0.163 | |
| calculateCTDT | 0.063 | 0.005 | 0.070 | |
| calculateCTriad | 0.146 | 0.007 | 0.153 | |
| calculateDC | 0.032 | 0.003 | 0.035 | |
| calculateF | 0.102 | 0.002 | 0.105 | |
| calculateKSAAP | 0.036 | 0.002 | 0.039 | |
| calculateQD_Sm | 0.689 | 0.030 | 0.728 | |
| calculateTC | 0.595 | 0.056 | 0.663 | |
| calculateTC_Sm | 0.103 | 0.008 | 0.112 | |
| corr_plot | 17.103 | 0.133 | 17.348 | |
| enrichfindP | 0.208 | 0.045 | 12.474 | |
| enrichfind_hp | 0.015 | 0.004 | 0.854 | |
| enrichplot | 0.170 | 0.002 | 0.176 | |
| filter_missing_values | 0 | 0 | 0 | |
| getFASTA | 0.031 | 0.007 | 3.723 | |
| getHPI | 0.001 | 0.000 | 0.000 | |
| get_negativePPI | 0.000 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.001 | 0.001 | |
| plotPPI | 0.030 | 0.001 | 0.031 | |
| pred_ensembel | 6.288 | 0.207 | 5.766 | |
| var_imp | 17.184 | 0.194 | 17.580 | |