| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-19 12:54 -0400 (Tue, 19 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4898 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4617 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1016/2377 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.19.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | ||||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.19.0.tar.gz |
| StartedAt: 2026-05-18 22:02:17 -0400 (Mon, 18 May 2026) |
| EndedAt: 2026-05-18 22:05:33 -0400 (Mon, 18 May 2026) |
| EllapsedTime: 195.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 Patched (2026-05-01 r89994)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-19 02:02:18 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 16.951 0.075 17.054
var_imp 16.890 0.087 17.121
FSmethod 16.897 0.066 17.187
pred_ensembel 6.087 0.179 5.535
enrichfindP 0.200 0.034 12.945
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.19.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 112.172807
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 112.178724
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 100.763529
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.548114
iter 10 value 93.502281
final value 93.221050
converged
Fitting Repeat 5
# weights: 103
initial value 95.075620
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.360348
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 100.334028
final value 94.449438
converged
Fitting Repeat 3
# weights: 305
initial value 100.331082
iter 10 value 94.379623
iter 20 value 93.743443
iter 30 value 92.993707
iter 40 value 92.911447
final value 92.911240
converged
Fitting Repeat 4
# weights: 305
initial value 100.371911
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.124475
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 113.322991
final value 94.442074
converged
Fitting Repeat 2
# weights: 507
initial value 111.913440
final value 94.275362
converged
Fitting Repeat 3
# weights: 507
initial value 105.651972
final value 94.248062
converged
Fitting Repeat 4
# weights: 507
initial value 102.468137
iter 10 value 85.747644
final value 85.226615
converged
Fitting Repeat 5
# weights: 507
initial value 120.340000
iter 10 value 93.228271
iter 20 value 85.887761
iter 30 value 85.761036
iter 40 value 85.719380
iter 50 value 85.226626
iter 60 value 85.226564
final value 85.226560
converged
Fitting Repeat 1
# weights: 103
initial value 97.612545
iter 10 value 94.486885
iter 20 value 94.329097
iter 30 value 94.328092
iter 40 value 91.835512
iter 50 value 88.137503
iter 60 value 86.909121
iter 70 value 85.823039
iter 80 value 85.639472
iter 90 value 85.616340
iter 90 value 85.616340
iter 90 value 85.616340
final value 85.616340
converged
Fitting Repeat 2
# weights: 103
initial value 96.049991
iter 10 value 93.852469
iter 20 value 90.114321
iter 30 value 87.338242
iter 40 value 86.944287
iter 50 value 86.745646
iter 60 value 86.713112
iter 70 value 86.707970
iter 70 value 86.707970
iter 70 value 86.707970
final value 86.707970
converged
Fitting Repeat 3
# weights: 103
initial value 97.864773
iter 10 value 90.619119
iter 20 value 88.538437
iter 30 value 87.798475
iter 40 value 87.244492
iter 50 value 86.652774
iter 60 value 84.281982
iter 70 value 84.223547
final value 84.218704
converged
Fitting Repeat 4
# weights: 103
initial value 102.602666
iter 10 value 94.321228
iter 20 value 93.307176
iter 30 value 91.161897
iter 40 value 90.986339
iter 50 value 86.462591
iter 60 value 85.161323
iter 70 value 84.594182
iter 80 value 84.097049
iter 90 value 83.901803
final value 83.900758
converged
Fitting Repeat 5
# weights: 103
initial value 97.910246
iter 10 value 94.426745
iter 20 value 90.009969
iter 30 value 88.839467
iter 40 value 88.037426
iter 50 value 87.110663
iter 60 value 84.399402
iter 70 value 84.195685
final value 84.195264
converged
Fitting Repeat 1
# weights: 305
initial value 118.210145
iter 10 value 94.454725
iter 20 value 92.753581
iter 30 value 87.823850
iter 40 value 86.197333
iter 50 value 85.945477
iter 60 value 85.670369
iter 70 value 84.759062
iter 80 value 84.481943
iter 90 value 84.289714
iter 100 value 83.829139
final value 83.829139
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.252227
iter 10 value 94.516166
iter 20 value 91.004525
iter 30 value 88.975482
iter 40 value 87.104134
iter 50 value 86.389646
iter 60 value 85.540209
iter 70 value 85.252167
iter 80 value 84.816957
iter 90 value 84.613540
iter 100 value 84.515730
final value 84.515730
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.398869
iter 10 value 95.287032
iter 20 value 93.407622
iter 30 value 88.520034
iter 40 value 85.584320
iter 50 value 85.170594
iter 60 value 84.731889
iter 70 value 83.562561
iter 80 value 83.279535
iter 90 value 83.171946
iter 100 value 82.977573
final value 82.977573
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 125.726091
iter 10 value 94.427162
iter 20 value 92.060197
iter 30 value 86.332289
iter 40 value 84.179941
iter 50 value 82.971023
iter 60 value 82.687619
iter 70 value 82.524284
iter 80 value 82.440474
iter 90 value 82.408523
iter 100 value 82.338551
final value 82.338551
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.874496
iter 10 value 94.354523
iter 20 value 87.515878
iter 30 value 86.611397
iter 40 value 85.725610
iter 50 value 83.370419
iter 60 value 82.761337
iter 70 value 82.587058
iter 80 value 82.560102
iter 90 value 82.476811
iter 100 value 82.441100
final value 82.441100
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 118.735529
iter 10 value 89.996929
iter 20 value 87.489422
iter 30 value 86.788408
iter 40 value 85.921044
iter 50 value 83.163549
iter 60 value 82.549249
iter 70 value 82.191899
iter 80 value 82.161613
iter 90 value 82.115418
iter 100 value 81.979136
final value 81.979136
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 145.184018
iter 10 value 94.880640
iter 20 value 94.055020
iter 30 value 87.519492
iter 40 value 86.258566
iter 50 value 85.136832
iter 60 value 84.259251
iter 70 value 83.918176
iter 80 value 83.266800
iter 90 value 82.990970
iter 100 value 82.720949
final value 82.720949
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.272531
iter 10 value 94.426585
iter 20 value 94.269575
iter 30 value 87.330971
iter 40 value 86.288971
iter 50 value 85.541005
iter 60 value 84.947169
iter 70 value 84.895048
iter 80 value 84.783664
iter 90 value 84.662186
iter 100 value 84.087338
final value 84.087338
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.020487
iter 10 value 92.905663
iter 20 value 87.001086
iter 30 value 85.949203
iter 40 value 84.234808
iter 50 value 83.797341
iter 60 value 83.591698
iter 70 value 83.300777
iter 80 value 82.686648
iter 90 value 82.543118
iter 100 value 82.470807
final value 82.470807
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.379497
iter 10 value 95.426019
iter 20 value 86.727311
iter 30 value 85.353113
iter 40 value 83.969086
iter 50 value 83.894196
iter 60 value 83.836818
iter 70 value 83.762285
iter 80 value 83.693061
iter 90 value 83.369643
iter 100 value 82.794205
final value 82.794205
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.208450
final value 94.485882
converged
Fitting Repeat 2
# weights: 103
initial value 99.688081
final value 94.485747
converged
Fitting Repeat 3
# weights: 103
initial value 107.142720
final value 94.485726
converged
Fitting Repeat 4
# weights: 103
initial value 97.072082
final value 94.276935
converged
Fitting Repeat 5
# weights: 103
initial value 98.905172
final value 94.485651
converged
Fitting Repeat 1
# weights: 305
initial value 98.161904
iter 10 value 94.488502
iter 20 value 94.236353
iter 30 value 93.950926
iter 40 value 87.043796
iter 50 value 87.012893
iter 60 value 87.012123
iter 70 value 87.005426
iter 80 value 86.985287
iter 90 value 86.677879
iter 100 value 85.677340
final value 85.677340
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 96.378105
iter 10 value 94.489145
iter 20 value 94.448036
iter 30 value 94.189630
iter 40 value 93.936304
iter 50 value 93.935554
iter 60 value 87.038196
iter 70 value 86.683617
iter 80 value 86.628768
iter 90 value 86.468618
iter 100 value 86.465951
final value 86.465951
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.626810
iter 10 value 94.093521
iter 20 value 93.177007
iter 30 value 92.530380
iter 40 value 92.529930
iter 40 value 92.529929
iter 40 value 92.529929
final value 92.529929
converged
Fitting Repeat 4
# weights: 305
initial value 99.446472
iter 10 value 94.279802
iter 20 value 94.234141
iter 30 value 92.785920
iter 40 value 85.122361
iter 50 value 84.072994
iter 60 value 82.886072
iter 70 value 82.731072
final value 82.730879
converged
Fitting Repeat 5
# weights: 305
initial value 95.509551
iter 10 value 94.297912
iter 20 value 94.257693
iter 30 value 94.231339
iter 40 value 94.230236
iter 50 value 90.309730
iter 60 value 86.697362
iter 70 value 86.578505
iter 80 value 86.382985
iter 90 value 86.382862
final value 86.382749
converged
Fitting Repeat 1
# weights: 507
initial value 112.700236
iter 10 value 94.501689
iter 20 value 94.487608
iter 30 value 88.060295
iter 40 value 86.629455
iter 50 value 86.627499
iter 60 value 86.553877
iter 70 value 86.502080
iter 80 value 86.317552
iter 90 value 85.506207
iter 100 value 85.037248
final value 85.037248
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.401690
iter 10 value 94.289551
iter 20 value 89.840828
iter 30 value 87.744339
iter 40 value 86.093637
iter 50 value 85.793974
iter 60 value 85.619987
iter 70 value 85.618816
iter 80 value 85.618392
final value 85.617218
converged
Fitting Repeat 3
# weights: 507
initial value 105.420491
iter 10 value 94.492875
iter 20 value 94.482231
iter 30 value 94.290931
iter 40 value 90.293815
iter 50 value 89.740198
iter 60 value 89.527757
iter 70 value 89.526877
iter 80 value 89.292705
iter 90 value 89.116948
iter 100 value 88.064751
final value 88.064751
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.648958
iter 10 value 94.492154
iter 20 value 94.343242
iter 30 value 93.584519
iter 40 value 93.366061
iter 50 value 86.563661
iter 60 value 85.934139
iter 70 value 85.013631
iter 80 value 85.001447
iter 80 value 85.001446
iter 80 value 85.001446
final value 85.001446
converged
Fitting Repeat 5
# weights: 507
initial value 94.936114
iter 10 value 94.487957
iter 20 value 94.144911
iter 30 value 86.274322
iter 40 value 85.272498
iter 50 value 85.271277
final value 85.271166
converged
Fitting Repeat 1
# weights: 103
initial value 99.677192
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 96.038599
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 98.133166
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 105.121563
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 97.194183
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 116.937900
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 116.272731
final value 94.024690
converged
Fitting Repeat 3
# weights: 305
initial value 104.348452
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 95.985937
iter 10 value 86.372139
final value 86.268065
converged
Fitting Repeat 5
# weights: 305
initial value 96.762762
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 100.387736
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 92.470113
iter 10 value 89.817934
final value 89.817648
converged
Fitting Repeat 3
# weights: 507
initial value 98.574951
iter 10 value 93.755621
iter 20 value 92.835309
iter 30 value 92.781135
final value 92.779912
converged
Fitting Repeat 4
# weights: 507
initial value 117.405417
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 98.402698
iter 10 value 93.438698
final value 93.366019
converged
Fitting Repeat 1
# weights: 103
initial value 109.095284
iter 10 value 94.056769
iter 20 value 92.636407
iter 30 value 91.141998
iter 40 value 91.061931
iter 50 value 91.059584
iter 60 value 91.059345
iter 70 value 91.059097
iter 80 value 91.058928
final value 91.058912
converged
Fitting Repeat 2
# weights: 103
initial value 105.443374
iter 10 value 93.576380
iter 20 value 91.287382
iter 30 value 84.395682
iter 40 value 81.664317
iter 50 value 80.872112
iter 60 value 79.400883
iter 70 value 79.323192
final value 79.317794
converged
Fitting Repeat 3
# weights: 103
initial value 98.862647
iter 10 value 87.650065
iter 20 value 86.753161
iter 30 value 85.593845
iter 40 value 83.495566
iter 50 value 81.152116
iter 60 value 80.026009
iter 70 value 79.397741
iter 80 value 79.343879
final value 79.343876
converged
Fitting Repeat 4
# weights: 103
initial value 102.584003
iter 10 value 94.064098
iter 20 value 93.013224
iter 30 value 91.356342
iter 40 value 81.530300
iter 50 value 80.886895
iter 60 value 80.584419
iter 70 value 79.461077
iter 80 value 79.317826
final value 79.317811
converged
Fitting Repeat 5
# weights: 103
initial value 101.625619
iter 10 value 93.949791
iter 20 value 91.549859
iter 30 value 85.794516
iter 40 value 85.733934
iter 50 value 85.453837
iter 60 value 84.717056
iter 70 value 82.856501
iter 80 value 82.671925
iter 90 value 82.637348
iter 100 value 82.553623
final value 82.553623
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 99.853909
iter 10 value 94.040280
iter 20 value 92.933270
iter 30 value 91.751163
iter 40 value 87.585803
iter 50 value 86.837852
iter 60 value 82.507797
iter 70 value 81.805656
iter 80 value 81.639750
iter 90 value 81.168689
iter 100 value 81.062406
final value 81.062406
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.423184
iter 10 value 93.783202
iter 20 value 92.937171
iter 30 value 92.581787
iter 40 value 86.429186
iter 50 value 84.264556
iter 60 value 81.654223
iter 70 value 80.983044
iter 80 value 79.989894
iter 90 value 79.176396
iter 100 value 79.045627
final value 79.045627
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.370129
iter 10 value 93.208950
iter 20 value 88.220470
iter 30 value 84.402137
iter 40 value 83.084196
iter 50 value 81.132137
iter 60 value 78.872324
iter 70 value 78.706401
iter 80 value 78.337895
iter 90 value 78.011507
iter 100 value 77.553107
final value 77.553107
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 119.618218
iter 10 value 93.778453
iter 20 value 88.767519
iter 30 value 85.389389
iter 40 value 83.743959
iter 50 value 83.496095
iter 60 value 82.528593
iter 70 value 82.417000
iter 80 value 82.240930
iter 90 value 81.499318
iter 100 value 79.012995
final value 79.012995
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 123.975057
iter 10 value 94.861128
iter 20 value 93.989519
iter 30 value 87.277482
iter 40 value 83.796755
iter 50 value 82.986108
iter 60 value 82.868056
iter 70 value 81.932934
iter 80 value 80.732388
iter 90 value 79.361812
iter 100 value 79.209816
final value 79.209816
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 123.838693
iter 10 value 92.682088
iter 20 value 91.769674
iter 30 value 90.266684
iter 40 value 85.031601
iter 50 value 82.651441
iter 60 value 80.411266
iter 70 value 78.930019
iter 80 value 78.604776
iter 90 value 78.302119
iter 100 value 78.029598
final value 78.029598
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 136.675951
iter 10 value 94.324509
iter 20 value 87.157022
iter 30 value 85.054273
iter 40 value 83.830093
iter 50 value 80.807767
iter 60 value 79.322334
iter 70 value 78.579260
iter 80 value 78.181153
iter 90 value 77.944579
iter 100 value 77.816493
final value 77.816493
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.006871
iter 10 value 93.924915
iter 20 value 88.662788
iter 30 value 86.819157
iter 40 value 84.855010
iter 50 value 82.516903
iter 60 value 80.443976
iter 70 value 79.233034
iter 80 value 78.735417
iter 90 value 78.614955
iter 100 value 78.459681
final value 78.459681
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.230561
iter 10 value 93.885153
iter 20 value 90.976833
iter 30 value 90.135819
iter 40 value 89.005181
iter 50 value 81.616184
iter 60 value 79.635898
iter 70 value 79.334486
iter 80 value 79.224974
iter 90 value 79.142148
iter 100 value 79.057158
final value 79.057158
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.665531
iter 10 value 92.943028
iter 20 value 86.088684
iter 30 value 83.745786
iter 40 value 81.030668
iter 50 value 79.701372
iter 60 value 79.086961
iter 70 value 78.401219
iter 80 value 78.118025
iter 90 value 77.922164
iter 100 value 77.689195
final value 77.689195
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.254872
final value 94.054413
converged
Fitting Repeat 2
# weights: 103
initial value 109.275894
iter 10 value 94.053108
iter 20 value 92.688292
iter 30 value 85.185860
final value 85.125142
converged
Fitting Repeat 3
# weights: 103
initial value 100.314712
final value 94.054699
converged
Fitting Repeat 4
# weights: 103
initial value 100.462646
final value 94.054578
converged
Fitting Repeat 5
# weights: 103
initial value 100.059422
final value 94.054650
converged
Fitting Repeat 1
# weights: 305
initial value 96.832785
iter 10 value 93.588143
iter 20 value 93.585401
iter 30 value 86.303182
iter 40 value 82.768500
iter 50 value 82.492368
iter 60 value 81.805936
final value 81.782268
converged
Fitting Repeat 2
# weights: 305
initial value 102.096990
iter 10 value 93.875067
iter 20 value 89.552647
iter 30 value 86.482612
iter 40 value 84.608535
iter 50 value 84.388066
iter 60 value 84.348342
iter 70 value 84.347762
iter 80 value 82.223236
iter 90 value 81.542788
iter 100 value 81.518201
final value 81.518201
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 95.937147
iter 10 value 92.985807
iter 20 value 92.824650
iter 30 value 91.658038
iter 40 value 89.561838
iter 50 value 89.561320
iter 60 value 89.457681
iter 70 value 89.457217
iter 80 value 89.455783
final value 89.455550
converged
Fitting Repeat 4
# weights: 305
initial value 98.731073
iter 10 value 92.867031
iter 20 value 92.844712
iter 30 value 92.605396
iter 30 value 92.605396
iter 30 value 92.605396
final value 92.605396
converged
Fitting Repeat 5
# weights: 305
initial value 119.156261
iter 10 value 94.057582
iter 20 value 93.763415
final value 93.582740
converged
Fitting Repeat 1
# weights: 507
initial value 111.735755
iter 10 value 94.061267
iter 20 value 93.704938
iter 30 value 93.584305
iter 40 value 93.464933
iter 50 value 82.610501
iter 60 value 82.191531
iter 70 value 82.138512
iter 80 value 81.793307
iter 90 value 81.207553
iter 100 value 80.883125
final value 80.883125
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.002122
iter 10 value 94.061421
iter 20 value 93.093761
iter 30 value 92.723613
iter 40 value 92.612944
iter 50 value 92.611760
iter 60 value 92.461411
iter 70 value 92.460932
iter 80 value 92.460240
iter 90 value 92.434047
iter 100 value 89.790557
final value 89.790557
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.488778
iter 10 value 93.591305
iter 20 value 92.928991
iter 30 value 84.304589
iter 40 value 84.202946
iter 50 value 84.202153
iter 60 value 84.193880
iter 70 value 83.846764
iter 80 value 79.010635
iter 90 value 78.577766
iter 100 value 78.020467
final value 78.020467
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 101.451323
iter 10 value 89.136143
iter 20 value 85.233765
iter 30 value 84.933893
iter 40 value 84.932809
iter 50 value 84.535880
iter 60 value 84.528346
iter 70 value 81.429793
iter 80 value 80.132086
iter 90 value 79.429297
iter 100 value 78.503507
final value 78.503507
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.612057
iter 10 value 90.651596
iter 20 value 90.458425
iter 30 value 90.457002
iter 40 value 90.451313
iter 50 value 90.407735
iter 60 value 88.970677
iter 70 value 80.184457
iter 80 value 79.462001
iter 90 value 79.459434
iter 90 value 79.459434
final value 79.459434
converged
Fitting Repeat 1
# weights: 103
initial value 95.987999
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 98.146886
final value 94.032967
converged
Fitting Repeat 3
# weights: 103
initial value 97.863927
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.379448
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 99.578484
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 116.315968
final value 94.032967
converged
Fitting Repeat 2
# weights: 305
initial value 109.659029
iter 10 value 94.032967
iter 10 value 94.032967
iter 10 value 94.032967
final value 94.032967
converged
Fitting Repeat 3
# weights: 305
initial value 119.180172
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 106.432383
iter 10 value 94.044034
final value 93.991525
converged
Fitting Repeat 5
# weights: 305
initial value 124.030245
iter 10 value 94.032969
final value 94.032967
converged
Fitting Repeat 1
# weights: 507
initial value 95.993246
final value 94.032967
converged
Fitting Repeat 2
# weights: 507
initial value 97.122756
final value 94.052911
converged
Fitting Repeat 3
# weights: 507
initial value 94.848213
final value 94.032967
converged
Fitting Repeat 4
# weights: 507
initial value 103.270516
iter 10 value 91.921418
final value 91.845734
converged
Fitting Repeat 5
# weights: 507
initial value 96.463138
iter 10 value 93.539614
iter 20 value 91.701367
iter 30 value 86.256801
iter 40 value 84.762844
iter 50 value 84.756083
iter 60 value 81.479467
iter 70 value 81.177180
final value 81.072076
converged
Fitting Repeat 1
# weights: 103
initial value 97.699661
iter 10 value 86.414205
iter 20 value 82.554834
iter 30 value 82.327151
iter 40 value 82.226969
iter 50 value 82.105811
final value 82.105465
converged
Fitting Repeat 2
# weights: 103
initial value 97.667188
iter 10 value 94.056787
iter 20 value 91.097113
iter 30 value 83.066701
iter 40 value 82.817987
iter 50 value 81.783545
final value 81.764641
converged
Fitting Repeat 3
# weights: 103
initial value 101.760954
iter 10 value 94.057265
iter 20 value 93.163883
iter 30 value 92.623089
iter 40 value 92.542928
iter 50 value 83.564920
iter 60 value 82.678181
iter 70 value 81.954162
iter 80 value 81.736599
iter 90 value 81.726364
final value 81.726362
converged
Fitting Repeat 4
# weights: 103
initial value 107.432241
iter 10 value 93.986275
iter 20 value 92.567873
iter 30 value 87.377145
iter 40 value 86.846312
iter 50 value 83.800660
iter 60 value 82.381709
iter 70 value 82.109919
iter 80 value 82.100509
final value 82.100151
converged
Fitting Repeat 5
# weights: 103
initial value 101.415615
iter 10 value 93.734690
iter 20 value 83.424772
iter 30 value 82.016939
iter 40 value 81.866257
iter 50 value 81.767350
final value 81.764541
converged
Fitting Repeat 1
# weights: 305
initial value 104.799510
iter 10 value 94.040056
iter 20 value 90.338204
iter 30 value 87.251967
iter 40 value 82.871275
iter 50 value 81.144486
iter 60 value 80.083193
iter 70 value 78.816484
iter 80 value 78.366099
iter 90 value 78.273636
iter 100 value 78.039515
final value 78.039515
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.084973
iter 10 value 94.181495
iter 20 value 94.038582
iter 30 value 90.596182
iter 40 value 90.166311
iter 50 value 86.853611
iter 60 value 86.384387
iter 70 value 85.118910
iter 80 value 82.477977
iter 90 value 82.154889
iter 100 value 81.958762
final value 81.958762
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 107.324209
iter 10 value 94.061940
iter 20 value 92.642542
iter 30 value 91.689552
iter 40 value 86.483384
iter 50 value 84.461931
iter 60 value 82.202781
iter 70 value 81.799223
iter 80 value 81.544162
iter 90 value 81.309516
iter 100 value 79.020746
final value 79.020746
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.513097
iter 10 value 94.143248
iter 20 value 93.726914
iter 30 value 91.674147
iter 40 value 88.458451
iter 50 value 81.923205
iter 60 value 81.010374
iter 70 value 80.526615
iter 80 value 80.454331
iter 90 value 80.274988
iter 100 value 79.725575
final value 79.725575
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 120.697213
iter 10 value 94.061094
iter 20 value 94.050002
iter 30 value 87.244278
iter 40 value 83.655876
iter 50 value 81.878594
iter 60 value 81.328525
iter 70 value 79.953254
iter 80 value 78.611693
iter 90 value 77.931982
iter 100 value 77.575416
final value 77.575416
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.168571
iter 10 value 93.783136
iter 20 value 85.022184
iter 30 value 82.460988
iter 40 value 82.056969
iter 50 value 81.888302
iter 60 value 81.839324
iter 70 value 81.762411
iter 80 value 81.497206
iter 90 value 80.325730
iter 100 value 78.333196
final value 78.333196
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 121.968557
iter 10 value 94.774515
iter 20 value 93.849099
iter 30 value 93.581709
iter 40 value 88.658224
iter 50 value 79.316505
iter 60 value 78.305999
iter 70 value 77.732117
iter 80 value 77.511012
iter 90 value 77.463965
iter 100 value 77.378472
final value 77.378472
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.876570
iter 10 value 93.757846
iter 20 value 86.991793
iter 30 value 85.574336
iter 40 value 85.430771
iter 50 value 82.449007
iter 60 value 82.076442
iter 70 value 79.963803
iter 80 value 78.755154
iter 90 value 78.349546
iter 100 value 78.062640
final value 78.062640
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 122.074651
iter 10 value 93.866615
iter 20 value 83.729658
iter 30 value 83.397752
iter 40 value 82.574748
iter 50 value 81.644822
iter 60 value 80.025658
iter 70 value 79.652050
iter 80 value 79.409101
iter 90 value 78.463997
iter 100 value 77.921520
final value 77.921520
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.403733
iter 10 value 93.871048
iter 20 value 87.810230
iter 30 value 85.168207
iter 40 value 83.279187
iter 50 value 82.127028
iter 60 value 80.344018
iter 70 value 79.350184
iter 80 value 79.061549
iter 90 value 78.496396
iter 100 value 78.201698
final value 78.201698
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.255403
final value 94.054768
converged
Fitting Repeat 2
# weights: 103
initial value 101.889721
final value 94.054719
converged
Fitting Repeat 3
# weights: 103
initial value 98.315400
final value 94.054532
converged
Fitting Repeat 4
# weights: 103
initial value 103.996551
iter 10 value 94.054485
iter 20 value 94.052955
final value 94.052912
converged
Fitting Repeat 5
# weights: 103
initial value 94.178993
final value 94.054425
converged
Fitting Repeat 1
# weights: 305
initial value 96.055603
iter 10 value 93.609700
iter 20 value 93.605360
iter 30 value 88.555531
iter 40 value 83.624998
iter 50 value 83.621745
iter 60 value 83.621348
iter 60 value 83.621348
final value 83.621348
converged
Fitting Repeat 2
# weights: 305
initial value 100.617768
iter 10 value 94.057659
iter 20 value 93.900982
iter 30 value 93.549667
iter 40 value 93.545009
final value 93.544967
converged
Fitting Repeat 3
# weights: 305
initial value 96.168460
iter 10 value 94.038421
iter 20 value 94.033372
iter 30 value 93.102405
iter 40 value 81.564266
iter 50 value 81.542626
iter 60 value 81.539696
iter 70 value 80.958603
iter 80 value 80.955871
iter 90 value 80.952089
final value 80.951752
converged
Fitting Repeat 4
# weights: 305
initial value 101.994478
iter 10 value 94.058134
iter 20 value 94.052929
final value 94.052913
converged
Fitting Repeat 5
# weights: 305
initial value 111.906759
iter 10 value 94.058534
iter 20 value 93.971928
iter 30 value 92.502519
iter 40 value 83.984598
iter 50 value 83.976935
iter 60 value 83.975557
iter 70 value 83.775278
iter 80 value 82.159570
iter 90 value 79.420030
iter 100 value 78.914447
final value 78.914447
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 121.811483
iter 10 value 92.685866
iter 20 value 92.223371
iter 30 value 92.217018
iter 40 value 92.185257
iter 50 value 89.882426
iter 60 value 79.940698
iter 70 value 79.813539
iter 80 value 79.797945
final value 79.797514
converged
Fitting Repeat 2
# weights: 507
initial value 106.295371
iter 10 value 94.061720
iter 20 value 94.050281
iter 30 value 91.144086
iter 40 value 85.193443
iter 50 value 84.401498
iter 60 value 84.372123
iter 70 value 82.154114
iter 80 value 82.112625
iter 90 value 82.095045
iter 100 value 82.088307
final value 82.088307
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.230100
iter 10 value 94.041861
iter 20 value 93.935760
iter 30 value 91.551970
iter 40 value 89.977980
iter 50 value 89.847868
iter 60 value 89.452908
iter 70 value 82.496761
iter 80 value 82.495330
iter 90 value 82.113177
iter 100 value 81.898050
final value 81.898050
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.890705
iter 10 value 94.037161
iter 20 value 93.614069
iter 30 value 93.608409
iter 40 value 89.147730
iter 50 value 81.550917
iter 60 value 81.537219
iter 70 value 81.536815
iter 80 value 81.329104
final value 80.940884
converged
Fitting Repeat 5
# weights: 507
initial value 94.226004
iter 10 value 94.060242
iter 20 value 93.735405
iter 30 value 93.601761
final value 93.601752
converged
Fitting Repeat 1
# weights: 103
initial value 96.409749
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.617599
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 102.838201
final value 94.443243
converged
Fitting Repeat 4
# weights: 103
initial value 104.073730
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 113.829438
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 99.649296
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.958778
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 106.447723
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 102.113009
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 103.914440
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 108.328865
iter 10 value 94.400069
final value 94.400002
converged
Fitting Repeat 2
# weights: 507
initial value 106.001403
iter 10 value 94.323659
iter 20 value 84.641548
iter 30 value 82.095790
iter 40 value 82.044419
iter 50 value 82.043195
final value 82.043171
converged
Fitting Repeat 3
# weights: 507
initial value 99.385160
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 119.876433
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 113.570927
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 110.091094
iter 10 value 93.177957
iter 20 value 86.098658
iter 30 value 85.036908
iter 40 value 84.953266
iter 50 value 84.809902
iter 60 value 84.337696
iter 70 value 83.813680
iter 80 value 83.726843
final value 83.726506
converged
Fitting Repeat 2
# weights: 103
initial value 98.293247
iter 10 value 94.465010
iter 20 value 87.040681
iter 30 value 85.932277
iter 40 value 85.672440
iter 50 value 84.964535
iter 60 value 84.267156
iter 70 value 83.969140
iter 80 value 83.730352
final value 83.726506
converged
Fitting Repeat 3
# weights: 103
initial value 98.729866
iter 10 value 94.486628
iter 20 value 94.427946
iter 30 value 90.397965
iter 40 value 86.365033
iter 50 value 85.902345
iter 60 value 85.779212
iter 70 value 84.435750
iter 80 value 84.025823
iter 90 value 83.760981
iter 100 value 83.727785
final value 83.727785
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.615001
iter 10 value 94.515435
iter 20 value 94.071442
iter 30 value 91.848734
iter 40 value 88.858115
iter 50 value 84.516535
iter 60 value 84.158460
iter 70 value 83.491874
iter 80 value 83.291902
iter 90 value 83.280134
final value 83.279150
converged
Fitting Repeat 5
# weights: 103
initial value 97.663111
iter 10 value 94.489802
iter 20 value 94.099943
iter 30 value 90.914295
iter 40 value 87.074412
iter 50 value 86.303487
iter 60 value 85.912467
iter 70 value 85.700330
iter 80 value 83.694682
iter 90 value 82.750760
iter 100 value 82.742643
final value 82.742643
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 119.392881
iter 10 value 94.491424
iter 20 value 94.021882
iter 30 value 90.051794
iter 40 value 89.298159
iter 50 value 88.454028
iter 60 value 87.414205
iter 70 value 86.542129
iter 80 value 83.140993
iter 90 value 81.266654
iter 100 value 80.620396
final value 80.620396
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 116.893321
iter 10 value 94.619080
iter 20 value 85.546395
iter 30 value 85.213281
iter 40 value 84.101586
iter 50 value 81.966292
iter 60 value 81.056197
iter 70 value 80.835199
iter 80 value 80.635160
iter 90 value 80.550965
iter 100 value 80.544405
final value 80.544405
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.733835
iter 10 value 94.920191
iter 20 value 87.390970
iter 30 value 85.249947
iter 40 value 83.242021
iter 50 value 82.302550
iter 60 value 82.155613
iter 70 value 82.097799
iter 80 value 82.073600
iter 90 value 82.035550
iter 100 value 81.709484
final value 81.709484
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 113.529824
iter 10 value 94.007467
iter 20 value 88.050248
iter 30 value 86.857422
iter 40 value 86.036077
iter 50 value 85.225902
iter 60 value 84.702333
iter 70 value 82.839144
iter 80 value 81.832713
iter 90 value 81.661454
iter 100 value 81.608405
final value 81.608405
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.856193
iter 10 value 94.527388
iter 20 value 88.765928
iter 30 value 85.243695
iter 40 value 85.003924
iter 50 value 84.928272
iter 60 value 83.965733
iter 70 value 81.861152
iter 80 value 80.635933
iter 90 value 80.371331
iter 100 value 80.276560
final value 80.276560
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 121.038514
iter 10 value 94.483241
iter 20 value 93.822600
iter 30 value 90.307765
iter 40 value 86.610435
iter 50 value 84.715343
iter 60 value 84.066911
iter 70 value 83.742244
iter 80 value 83.563877
iter 90 value 83.105343
iter 100 value 82.160285
final value 82.160285
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 115.049050
iter 10 value 94.181938
iter 20 value 84.326878
iter 30 value 82.732944
iter 40 value 81.387904
iter 50 value 80.279279
iter 60 value 79.614753
iter 70 value 79.495406
iter 80 value 79.404887
iter 90 value 79.326586
iter 100 value 79.274744
final value 79.274744
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.577762
iter 10 value 94.661489
iter 20 value 94.313061
iter 30 value 91.231432
iter 40 value 83.464572
iter 50 value 82.100171
iter 60 value 81.526040
iter 70 value 80.604540
iter 80 value 80.185177
iter 90 value 79.824296
iter 100 value 79.456212
final value 79.456212
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 127.928068
iter 10 value 94.819452
iter 20 value 93.069818
iter 30 value 86.614363
iter 40 value 83.916244
iter 50 value 81.770546
iter 60 value 80.775793
iter 70 value 79.835161
iter 80 value 79.570731
iter 90 value 79.472363
iter 100 value 79.435635
final value 79.435635
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.347588
iter 10 value 95.523487
iter 20 value 87.734893
iter 30 value 85.116772
iter 40 value 82.740876
iter 50 value 81.319730
iter 60 value 81.041006
iter 70 value 80.622005
iter 80 value 80.308070
iter 90 value 80.149657
iter 100 value 79.932826
final value 79.932826
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.886140
final value 94.485842
converged
Fitting Repeat 2
# weights: 103
initial value 98.780680
iter 10 value 94.486040
iter 20 value 94.484283
iter 30 value 94.428005
iter 40 value 86.011608
iter 50 value 86.007189
iter 60 value 86.007076
iter 70 value 85.889015
iter 80 value 85.234529
iter 90 value 85.202360
iter 100 value 85.202223
final value 85.202223
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 106.906212
final value 94.485707
converged
Fitting Repeat 4
# weights: 103
initial value 101.774416
final value 94.485665
converged
Fitting Repeat 5
# weights: 103
initial value 99.222240
final value 94.485992
converged
Fitting Repeat 1
# weights: 305
initial value 121.211096
iter 10 value 94.448005
iter 20 value 94.443899
iter 30 value 94.336526
iter 40 value 86.084527
iter 50 value 84.814402
iter 60 value 81.501662
iter 70 value 81.164966
iter 80 value 81.159742
iter 90 value 81.117517
iter 100 value 80.558849
final value 80.558849
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.420607
iter 10 value 94.487312
iter 20 value 92.480988
iter 30 value 92.299177
iter 40 value 92.262561
iter 50 value 92.257420
iter 60 value 92.087737
iter 70 value 86.740155
iter 80 value 85.891792
iter 90 value 85.851412
iter 100 value 84.726260
final value 84.726260
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 109.457137
iter 10 value 94.448010
iter 20 value 94.098387
iter 30 value 92.938702
iter 40 value 92.137684
iter 50 value 91.855951
final value 91.844613
converged
Fitting Repeat 4
# weights: 305
initial value 100.551355
iter 10 value 94.488989
iter 20 value 94.484397
iter 30 value 87.956389
iter 40 value 87.284525
final value 87.246045
converged
Fitting Repeat 5
# weights: 305
initial value 110.336474
iter 10 value 94.447824
iter 20 value 94.444569
iter 30 value 94.437103
iter 40 value 93.278727
iter 50 value 85.230727
iter 60 value 85.218107
iter 70 value 85.217359
iter 80 value 84.760373
iter 90 value 84.697683
iter 100 value 84.526837
final value 84.526837
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.549992
iter 10 value 88.680374
iter 20 value 87.320504
iter 30 value 87.192808
iter 40 value 87.191006
iter 50 value 87.186117
iter 60 value 87.177285
iter 70 value 87.175312
iter 80 value 83.717054
iter 90 value 80.774438
iter 100 value 79.924907
final value 79.924907
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 98.829269
iter 10 value 94.489812
iter 20 value 87.346799
iter 30 value 87.073846
iter 40 value 86.067669
iter 50 value 85.456174
iter 60 value 85.449142
iter 70 value 85.439382
final value 85.439163
converged
Fitting Repeat 3
# weights: 507
initial value 102.785599
iter 10 value 94.451802
iter 20 value 88.540618
iter 30 value 84.420225
iter 40 value 82.890288
iter 50 value 80.896714
iter 60 value 80.154823
iter 70 value 79.499242
iter 80 value 78.997414
iter 90 value 78.837567
iter 100 value 78.353971
final value 78.353971
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.948921
iter 10 value 94.451261
iter 20 value 94.444365
final value 94.443201
converged
Fitting Repeat 5
# weights: 507
initial value 100.328163
iter 10 value 90.828972
iter 20 value 83.852750
iter 30 value 83.458977
iter 40 value 83.429177
iter 50 value 83.416219
final value 83.415693
converged
Fitting Repeat 1
# weights: 103
initial value 98.723938
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 98.372195
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.424373
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 99.715757
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 98.008394
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.384420
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 104.934717
final value 94.466822
converged
Fitting Repeat 3
# weights: 305
initial value 98.025917
iter 10 value 94.428373
final value 94.427726
converged
Fitting Repeat 4
# weights: 305
initial value 98.490531
final value 94.466822
converged
Fitting Repeat 5
# weights: 305
initial value 95.782661
final value 94.456504
converged
Fitting Repeat 1
# weights: 507
initial value 96.599669
final value 94.484206
converged
Fitting Repeat 2
# weights: 507
initial value 104.929077
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 101.206221
final value 94.305883
converged
Fitting Repeat 4
# weights: 507
initial value 101.558577
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 99.916905
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 96.823668
iter 10 value 94.489014
iter 20 value 94.467715
iter 30 value 89.660265
iter 40 value 87.763282
iter 50 value 86.804321
iter 60 value 86.432731
iter 70 value 86.377056
iter 80 value 86.343702
final value 86.343096
converged
Fitting Repeat 2
# weights: 103
initial value 96.353417
iter 10 value 94.457835
iter 20 value 89.216965
iter 30 value 88.096565
iter 40 value 87.877697
iter 50 value 87.602041
iter 60 value 86.472431
iter 70 value 86.165812
final value 86.165475
converged
Fitting Repeat 3
# weights: 103
initial value 106.205410
iter 10 value 94.486452
iter 20 value 93.290002
iter 30 value 90.928360
iter 40 value 87.586077
iter 50 value 86.601376
iter 60 value 86.004240
iter 70 value 85.603259
iter 80 value 84.240435
iter 90 value 83.617719
final value 83.609428
converged
Fitting Repeat 4
# weights: 103
initial value 117.557813
iter 10 value 94.463957
iter 20 value 89.759387
iter 30 value 89.012825
iter 40 value 87.713651
iter 50 value 84.511624
iter 60 value 84.100214
iter 70 value 84.005712
iter 80 value 83.610066
final value 83.609428
converged
Fitting Repeat 5
# weights: 103
initial value 103.669948
iter 10 value 94.506666
iter 20 value 88.785348
iter 30 value 87.669791
iter 40 value 87.023472
iter 50 value 84.503568
iter 60 value 84.359825
iter 70 value 84.322834
iter 80 value 84.026025
iter 90 value 83.420859
final value 83.397100
converged
Fitting Repeat 1
# weights: 305
initial value 100.298083
iter 10 value 94.385027
iter 20 value 93.992634
iter 30 value 91.785872
iter 40 value 91.340020
iter 50 value 86.074770
iter 60 value 84.379585
iter 70 value 83.877241
iter 80 value 83.618049
iter 90 value 83.500046
iter 100 value 83.207578
final value 83.207578
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.787464
iter 10 value 94.540086
iter 20 value 90.749887
iter 30 value 88.330707
iter 40 value 88.122742
iter 50 value 87.844756
iter 60 value 86.313664
iter 70 value 84.485660
iter 80 value 84.271917
iter 90 value 84.016490
iter 100 value 83.118830
final value 83.118830
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.165961
iter 10 value 94.282288
iter 20 value 89.920726
iter 30 value 88.938446
iter 40 value 88.855850
iter 50 value 87.602395
iter 60 value 86.751793
iter 70 value 86.519942
iter 80 value 85.313160
iter 90 value 83.885717
iter 100 value 83.110039
final value 83.110039
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.120549
iter 10 value 94.550116
iter 20 value 89.833760
iter 30 value 88.737792
iter 40 value 88.041037
iter 50 value 87.228826
iter 60 value 86.568688
iter 70 value 85.443887
iter 80 value 83.614715
iter 90 value 82.671328
iter 100 value 82.249984
final value 82.249984
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.294749
iter 10 value 94.786414
iter 20 value 89.840674
iter 30 value 88.966375
iter 40 value 86.650824
iter 50 value 84.689540
iter 60 value 84.016337
iter 70 value 83.291316
iter 80 value 83.007562
iter 90 value 82.839012
iter 100 value 82.734262
final value 82.734262
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.345256
iter 10 value 94.511742
iter 20 value 90.916463
iter 30 value 87.082129
iter 40 value 86.896915
iter 50 value 85.419912
iter 60 value 83.401845
iter 70 value 82.905930
iter 80 value 82.548295
iter 90 value 82.265689
iter 100 value 82.160022
final value 82.160022
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 117.232135
iter 10 value 94.225042
iter 20 value 88.093804
iter 30 value 87.075547
iter 40 value 86.024229
iter 50 value 84.683371
iter 60 value 83.887525
iter 70 value 83.424366
iter 80 value 83.099331
iter 90 value 82.952639
iter 100 value 82.668288
final value 82.668288
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.601168
iter 10 value 94.145554
iter 20 value 91.009538
iter 30 value 86.689118
iter 40 value 84.526908
iter 50 value 84.328935
iter 60 value 83.807783
iter 70 value 83.268281
iter 80 value 82.744558
iter 90 value 82.410675
iter 100 value 82.252588
final value 82.252588
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.817758
iter 10 value 93.669803
iter 20 value 87.846327
iter 30 value 86.968050
iter 40 value 86.723311
iter 50 value 86.594371
iter 60 value 85.582032
iter 70 value 85.172649
iter 80 value 84.981343
iter 90 value 84.897656
iter 100 value 84.743851
final value 84.743851
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.312157
iter 10 value 94.448418
iter 20 value 88.180108
iter 30 value 87.843831
iter 40 value 87.338692
iter 50 value 85.140423
iter 60 value 84.544627
iter 70 value 84.089522
iter 80 value 83.771097
iter 90 value 82.823826
iter 100 value 82.631112
final value 82.631112
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.852092
final value 94.485632
converged
Fitting Repeat 2
# weights: 103
initial value 96.434345
final value 94.485762
converged
Fitting Repeat 3
# weights: 103
initial value 95.498359
final value 94.485951
converged
Fitting Repeat 4
# weights: 103
initial value 103.933917
final value 94.485886
converged
Fitting Repeat 5
# weights: 103
initial value 111.554998
final value 94.485832
converged
Fitting Repeat 1
# weights: 305
initial value 97.340195
iter 10 value 94.300071
iter 20 value 94.293027
final value 94.291067
converged
Fitting Repeat 2
# weights: 305
initial value 96.537307
iter 10 value 94.488330
iter 20 value 94.332699
iter 30 value 94.288659
final value 94.288654
converged
Fitting Repeat 3
# weights: 305
initial value 96.329286
iter 10 value 94.452908
iter 20 value 94.450265
iter 30 value 94.439893
iter 40 value 89.352633
iter 50 value 87.145356
iter 60 value 86.841791
final value 86.833885
converged
Fitting Repeat 4
# weights: 305
initial value 97.285897
iter 10 value 94.293959
iter 20 value 88.423979
iter 30 value 87.953468
iter 40 value 87.944692
iter 50 value 87.902926
iter 60 value 87.832168
iter 70 value 87.736787
iter 80 value 87.234164
iter 90 value 84.330990
iter 100 value 83.800318
final value 83.800318
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.701439
iter 10 value 94.472104
iter 20 value 94.296703
iter 30 value 94.278916
final value 94.262858
converged
Fitting Repeat 1
# weights: 507
initial value 123.056117
iter 10 value 94.243424
iter 20 value 94.212210
iter 30 value 92.619245
iter 40 value 86.719607
iter 50 value 84.271192
iter 60 value 83.935214
iter 70 value 83.904149
iter 80 value 83.795392
iter 90 value 83.792675
iter 100 value 83.791999
final value 83.791999
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.747397
iter 10 value 94.492478
iter 20 value 94.450509
iter 30 value 93.568117
iter 40 value 92.223312
final value 92.221254
converged
Fitting Repeat 3
# weights: 507
initial value 100.615492
iter 10 value 94.492658
iter 20 value 94.474564
iter 30 value 92.790808
final value 92.787209
converged
Fitting Repeat 4
# weights: 507
initial value 104.097772
iter 10 value 93.954655
iter 20 value 92.878396
iter 30 value 92.830591
iter 40 value 92.826995
iter 50 value 92.823717
iter 60 value 92.811052
iter 70 value 92.785580
iter 80 value 92.784865
iter 90 value 92.784827
final value 92.784826
converged
Fitting Repeat 5
# weights: 507
initial value 97.576561
iter 10 value 94.492649
iter 20 value 94.462521
iter 30 value 94.450215
final value 94.448556
converged
Fitting Repeat 1
# weights: 507
initial value 127.485595
iter 10 value 111.269920
iter 20 value 109.782259
iter 30 value 106.599397
iter 40 value 105.276352
iter 50 value 104.838549
iter 60 value 104.548915
iter 70 value 102.902055
iter 80 value 101.977791
iter 90 value 101.495163
iter 100 value 101.160718
final value 101.160718
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 136.475222
iter 10 value 118.823251
iter 20 value 117.721293
iter 30 value 109.254322
iter 40 value 106.177151
iter 50 value 104.851717
iter 60 value 102.756447
iter 70 value 102.334339
iter 80 value 101.930971
iter 90 value 101.631468
iter 100 value 101.478864
final value 101.478864
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 130.172479
iter 10 value 117.924231
iter 20 value 115.402740
iter 30 value 108.052768
iter 40 value 107.313107
iter 50 value 105.937484
iter 60 value 103.130963
iter 70 value 101.725882
iter 80 value 101.145991
iter 90 value 100.909032
iter 100 value 100.497224
final value 100.497224
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 128.205741
iter 10 value 117.829855
iter 20 value 107.836537
iter 30 value 105.971100
iter 40 value 105.608715
iter 50 value 104.204377
iter 60 value 103.950681
iter 70 value 103.500794
iter 80 value 102.021048
iter 90 value 101.579798
iter 100 value 101.500272
final value 101.500272
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 133.406933
iter 10 value 117.608297
iter 20 value 108.590652
iter 30 value 106.980378
iter 40 value 105.523041
iter 50 value 104.149039
iter 60 value 101.753913
iter 70 value 101.408239
iter 80 value 100.845492
iter 90 value 100.449913
iter 100 value 100.418678
final value 100.418678
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Mon May 18 22:05:28 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
19.666 0.649 75.238
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 16.897 | 0.066 | 17.187 | |
| FreqInteractors | 0.165 | 0.007 | 0.174 | |
| calculateAAC | 0.013 | 0.001 | 0.014 | |
| calculateAutocor | 0.116 | 0.006 | 0.123 | |
| calculateCTDC | 0.025 | 0.001 | 0.026 | |
| calculateCTDD | 0.163 | 0.010 | 0.173 | |
| calculateCTDT | 0.050 | 0.003 | 0.053 | |
| calculateCTriad | 0.142 | 0.005 | 0.147 | |
| calculateDC | 0.031 | 0.003 | 0.034 | |
| calculateF | 0.103 | 0.001 | 0.104 | |
| calculateKSAAP | 0.033 | 0.002 | 0.036 | |
| calculateQD_Sm | 0.647 | 0.030 | 0.676 | |
| calculateTC | 0.578 | 0.048 | 0.626 | |
| calculateTC_Sm | 0.097 | 0.004 | 0.102 | |
| corr_plot | 16.951 | 0.075 | 17.054 | |
| enrichfindP | 0.200 | 0.034 | 12.945 | |
| enrichfind_hp | 0.015 | 0.002 | 0.934 | |
| enrichplot | 0.163 | 0.002 | 0.165 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.034 | 0.008 | 3.958 | |
| getHPI | 0 | 0 | 0 | |
| get_negativePPI | 0.001 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.001 | |
| plotPPI | 0.030 | 0.001 | 0.032 | |
| pred_ensembel | 6.087 | 0.179 | 5.535 | |
| var_imp | 16.890 | 0.087 | 17.121 | |