| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-18 11:36 -0400 (Sat, 18 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4957 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4686 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1023/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-04-17 20:13:25 -0400 (Fri, 17 Apr 2026) |
| EndedAt: 2026-04-17 20:16:37 -0400 (Fri, 17 Apr 2026) |
| EllapsedTime: 191.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 alpha (2026-04-08 r89818)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-18 00:13:26 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 17.138 0.104 17.291
var_imp 16.993 0.137 17.249
FSmethod 17.001 0.078 17.128
pred_ensembel 6.201 0.174 5.693
enrichfindP 0.205 0.042 7.334
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 alpha (2026-04-08 r89818)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 102.205868
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 108.108321
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.893368
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 112.799656
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.501396
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 93.920041
iter 10 value 89.512320
iter 20 value 85.554806
iter 30 value 85.177400
iter 40 value 85.119029
final value 85.089396
converged
Fitting Repeat 2
# weights: 305
initial value 98.256586
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 116.416786
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.325295
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.143680
iter 10 value 93.394936
final value 93.394928
converged
Fitting Repeat 1
# weights: 507
initial value 100.604768
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 95.600492
iter 10 value 92.117780
iter 20 value 91.818846
iter 30 value 91.782431
final value 91.781957
converged
Fitting Repeat 3
# weights: 507
initial value 101.748688
final value 94.428839
converged
Fitting Repeat 4
# weights: 507
initial value 104.241772
iter 10 value 92.592109
iter 20 value 92.591670
final value 92.591667
converged
Fitting Repeat 5
# weights: 507
initial value 99.717888
iter 10 value 89.955668
iter 20 value 89.697383
iter 30 value 89.695257
final value 89.695239
converged
Fitting Repeat 1
# weights: 103
initial value 99.051393
iter 10 value 94.466065
iter 20 value 93.726068
iter 30 value 93.703286
iter 40 value 93.609618
iter 50 value 93.355455
iter 60 value 89.974747
iter 70 value 87.136379
iter 80 value 87.053469
iter 90 value 86.103140
iter 100 value 85.898728
final value 85.898728
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.276053
iter 10 value 94.486179
iter 20 value 93.753013
iter 30 value 93.680938
iter 40 value 92.751913
iter 50 value 87.891046
iter 60 value 86.874986
iter 70 value 86.465850
iter 80 value 86.060818
iter 90 value 85.902871
iter 100 value 85.868082
final value 85.868082
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 110.062273
iter 10 value 94.405617
iter 20 value 93.153057
iter 30 value 86.506099
iter 40 value 85.909817
iter 50 value 85.867961
final value 85.867793
converged
Fitting Repeat 4
# weights: 103
initial value 100.732192
iter 10 value 94.434243
iter 20 value 93.576692
iter 30 value 93.353458
iter 40 value 93.242230
iter 50 value 92.572803
iter 60 value 86.816378
iter 70 value 84.363124
iter 80 value 84.010144
iter 90 value 83.625707
iter 100 value 83.091047
final value 83.091047
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.900835
iter 10 value 94.486459
iter 20 value 93.847833
iter 30 value 93.678749
iter 40 value 93.661790
iter 50 value 93.316124
iter 60 value 90.093238
iter 70 value 86.351688
iter 80 value 85.274461
iter 90 value 84.589844
iter 100 value 83.897473
final value 83.897473
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 99.551133
iter 10 value 95.019425
iter 20 value 93.333499
iter 30 value 90.654163
iter 40 value 86.753759
iter 50 value 86.252324
iter 60 value 85.889607
iter 70 value 83.421480
iter 80 value 82.745012
iter 90 value 81.791281
iter 100 value 81.489092
final value 81.489092
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.304424
iter 10 value 94.495968
iter 20 value 94.486197
iter 30 value 93.694571
iter 40 value 88.611678
iter 50 value 87.775597
iter 60 value 86.172667
iter 70 value 85.429072
iter 80 value 85.205932
iter 90 value 84.626253
iter 100 value 83.475068
final value 83.475068
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.460130
iter 10 value 87.635441
iter 20 value 86.852849
iter 30 value 85.946247
iter 40 value 85.855216
iter 50 value 85.662176
iter 60 value 85.588459
iter 70 value 85.467745
iter 80 value 83.989903
iter 90 value 83.191071
iter 100 value 82.986489
final value 82.986489
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.585480
iter 10 value 92.114864
iter 20 value 88.963269
iter 30 value 86.027954
iter 40 value 84.000939
iter 50 value 83.347002
iter 60 value 83.050419
iter 70 value 83.011296
iter 80 value 82.645160
iter 90 value 82.087884
iter 100 value 81.918753
final value 81.918753
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.008877
iter 10 value 94.616526
iter 20 value 89.121185
iter 30 value 86.589282
iter 40 value 85.925125
iter 50 value 85.366388
iter 60 value 84.875900
iter 70 value 84.504152
iter 80 value 83.718434
iter 90 value 82.631083
iter 100 value 82.199631
final value 82.199631
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.039873
iter 10 value 94.007116
iter 20 value 93.352248
iter 30 value 91.672407
iter 40 value 88.255383
iter 50 value 84.602977
iter 60 value 83.733016
iter 70 value 83.254517
iter 80 value 82.742194
iter 90 value 82.432826
iter 100 value 82.230503
final value 82.230503
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.223321
iter 10 value 94.678758
iter 20 value 88.657020
iter 30 value 86.440276
iter 40 value 86.027929
iter 50 value 85.471484
iter 60 value 85.109058
iter 70 value 84.801260
iter 80 value 84.064119
iter 90 value 83.880943
iter 100 value 82.952147
final value 82.952147
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.831293
iter 10 value 94.099871
iter 20 value 90.175466
iter 30 value 87.180112
iter 40 value 86.062153
iter 50 value 85.503923
iter 60 value 85.331439
iter 70 value 84.987613
iter 80 value 84.383398
iter 90 value 83.932096
iter 100 value 83.645023
final value 83.645023
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.004750
iter 10 value 95.500040
iter 20 value 93.689303
iter 30 value 87.843843
iter 40 value 86.562612
iter 50 value 83.970991
iter 60 value 82.970244
iter 70 value 82.776634
iter 80 value 82.592827
iter 90 value 82.263026
iter 100 value 82.112523
final value 82.112523
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 122.683530
iter 10 value 94.313288
iter 20 value 93.652041
iter 30 value 93.003695
iter 40 value 90.892581
iter 50 value 87.807104
iter 60 value 86.568679
iter 70 value 85.344475
iter 80 value 84.608950
iter 90 value 83.216333
iter 100 value 82.921849
final value 82.921849
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.657903
final value 94.486092
converged
Fitting Repeat 2
# weights: 103
initial value 105.195933
final value 94.485852
converged
Fitting Repeat 3
# weights: 103
initial value 98.527087
final value 94.485890
converged
Fitting Repeat 4
# weights: 103
initial value 97.859621
iter 10 value 93.563044
iter 20 value 93.560266
iter 30 value 93.364579
iter 40 value 93.078752
final value 93.059293
converged
Fitting Repeat 5
# weights: 103
initial value 97.850950
final value 94.485713
converged
Fitting Repeat 1
# weights: 305
initial value 95.396764
iter 10 value 94.489039
iter 20 value 94.484270
final value 94.484238
converged
Fitting Repeat 2
# weights: 305
initial value 100.347150
iter 10 value 94.489118
iter 20 value 94.484235
iter 30 value 93.071378
iter 40 value 92.218400
final value 92.214976
converged
Fitting Repeat 3
# weights: 305
initial value 96.141740
iter 10 value 94.488698
iter 20 value 94.481946
iter 30 value 93.268236
iter 40 value 89.939335
final value 89.934568
converged
Fitting Repeat 4
# weights: 305
initial value 116.532539
iter 10 value 94.489421
iter 20 value 94.484302
iter 30 value 93.396321
final value 93.396152
converged
Fitting Repeat 5
# weights: 305
initial value 97.275964
iter 10 value 94.489064
iter 20 value 94.453036
iter 30 value 90.659085
iter 40 value 87.570977
iter 50 value 85.772305
iter 60 value 85.727122
iter 70 value 85.725856
final value 85.725854
converged
Fitting Repeat 1
# weights: 507
initial value 103.112030
iter 10 value 94.492121
iter 20 value 93.454168
iter 30 value 88.895596
iter 40 value 85.489019
iter 50 value 85.227903
iter 60 value 85.183104
iter 70 value 85.168479
iter 80 value 85.067918
iter 90 value 84.829025
iter 100 value 84.812320
final value 84.812320
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 95.909717
iter 10 value 91.867250
iter 20 value 91.696924
iter 30 value 91.692541
iter 40 value 87.816250
iter 50 value 87.473899
iter 60 value 87.465327
iter 70 value 86.359056
iter 80 value 86.356683
iter 90 value 84.165448
iter 100 value 84.102577
final value 84.102577
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 100.383910
iter 10 value 93.406141
iter 20 value 93.401520
iter 30 value 93.236534
iter 40 value 93.060952
iter 50 value 93.060637
iter 60 value 93.058890
iter 70 value 92.737080
iter 80 value 85.479113
iter 90 value 84.296185
iter 100 value 84.089037
final value 84.089037
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.981198
iter 10 value 94.493038
iter 20 value 94.484163
iter 30 value 93.397559
iter 40 value 93.396191
final value 93.395628
converged
Fitting Repeat 5
# weights: 507
initial value 108.375249
iter 10 value 94.131822
iter 20 value 94.120171
iter 30 value 93.496932
iter 40 value 88.317527
iter 50 value 87.961678
iter 60 value 87.654959
iter 70 value 87.648991
iter 80 value 87.646999
iter 90 value 87.646479
iter 90 value 87.646479
iter 90 value 87.646479
final value 87.646479
converged
Fitting Repeat 1
# weights: 103
initial value 101.277487
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 104.552404
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.836760
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.332059
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 97.650345
iter 10 value 93.648462
final value 93.647673
converged
Fitting Repeat 1
# weights: 305
initial value 110.934590
iter 10 value 93.904720
iter 10 value 93.904720
iter 10 value 93.904720
final value 93.904720
converged
Fitting Repeat 2
# weights: 305
initial value 105.587687
final value 93.842773
converged
Fitting Repeat 3
# weights: 305
initial value 97.375166
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 113.592381
final value 94.032967
converged
Fitting Repeat 5
# weights: 305
initial value 102.838618
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 115.680407
iter 10 value 91.715089
iter 20 value 91.714401
final value 91.714400
converged
Fitting Repeat 2
# weights: 507
initial value 98.107410
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 99.644135
final value 94.032967
converged
Fitting Repeat 4
# weights: 507
initial value 99.264998
iter 10 value 91.718799
final value 91.714401
converged
Fitting Repeat 5
# weights: 507
initial value 111.996157
final value 94.032967
converged
Fitting Repeat 1
# weights: 103
initial value 101.986043
iter 10 value 94.067959
iter 20 value 94.047867
iter 30 value 93.871151
iter 40 value 93.644857
iter 50 value 93.565697
iter 60 value 85.677605
iter 70 value 83.767702
iter 80 value 83.707962
iter 90 value 83.676987
iter 100 value 83.514976
final value 83.514976
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.586023
iter 10 value 94.055323
iter 20 value 93.631444
iter 30 value 91.568193
iter 40 value 85.055934
iter 50 value 84.268914
iter 60 value 83.836988
iter 70 value 83.498690
iter 80 value 83.478764
final value 83.478659
converged
Fitting Repeat 3
# weights: 103
initial value 103.023972
iter 10 value 94.065771
iter 20 value 93.945832
iter 30 value 85.893153
iter 40 value 84.070463
iter 50 value 83.901479
iter 60 value 83.611256
iter 70 value 83.463572
iter 80 value 83.423005
final value 83.422481
converged
Fitting Repeat 4
# weights: 103
initial value 102.970085
iter 10 value 94.037749
iter 20 value 93.733481
iter 30 value 93.619258
iter 40 value 84.556632
iter 50 value 83.397654
iter 60 value 83.338669
iter 70 value 83.308623
iter 70 value 83.308622
iter 70 value 83.308622
final value 83.308622
converged
Fitting Repeat 5
# weights: 103
initial value 110.355169
iter 10 value 94.055135
iter 20 value 88.565825
iter 30 value 88.016860
iter 40 value 86.799341
iter 50 value 85.872973
iter 60 value 83.206705
iter 70 value 82.031722
iter 80 value 81.841552
iter 90 value 81.672008
iter 100 value 81.606989
final value 81.606989
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 104.779288
iter 10 value 93.899048
iter 20 value 93.493479
iter 30 value 89.229122
iter 40 value 86.005380
iter 50 value 84.808472
iter 60 value 83.669156
iter 70 value 81.458120
iter 80 value 80.926316
iter 90 value 80.715287
iter 100 value 80.589526
final value 80.589526
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.819637
iter 10 value 91.924087
iter 20 value 86.637156
iter 30 value 86.299438
iter 40 value 85.867049
iter 50 value 84.859518
iter 60 value 83.859193
iter 70 value 83.727798
iter 80 value 82.828128
iter 90 value 82.209756
iter 100 value 81.926347
final value 81.926347
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.717718
iter 10 value 94.062249
iter 20 value 93.697078
iter 30 value 85.799792
iter 40 value 84.995578
iter 50 value 84.473170
iter 60 value 83.586808
iter 70 value 83.498578
iter 80 value 83.276445
iter 90 value 82.874726
iter 100 value 82.479721
final value 82.479721
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 130.883600
iter 10 value 93.241247
iter 20 value 84.644853
iter 30 value 84.190915
iter 40 value 83.854098
iter 50 value 82.179716
iter 60 value 81.907348
iter 70 value 81.481693
iter 80 value 81.424033
iter 90 value 80.660598
iter 100 value 80.455672
final value 80.455672
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.742251
iter 10 value 94.032081
iter 20 value 87.645894
iter 30 value 84.776255
iter 40 value 84.144708
iter 50 value 83.849763
iter 60 value 83.721564
iter 70 value 83.369738
iter 80 value 83.257881
iter 90 value 83.250127
iter 100 value 83.026428
final value 83.026428
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.616331
iter 10 value 94.452302
iter 20 value 92.466451
iter 30 value 84.768544
iter 40 value 84.319751
iter 50 value 84.086871
iter 60 value 83.062908
iter 70 value 82.549985
iter 80 value 81.404806
iter 90 value 81.150435
iter 100 value 81.038413
final value 81.038413
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.153002
iter 10 value 94.161880
iter 20 value 87.689744
iter 30 value 86.317677
iter 40 value 83.800076
iter 50 value 83.292334
iter 60 value 83.043094
iter 70 value 82.579172
iter 80 value 81.813727
iter 90 value 81.547217
iter 100 value 81.103384
final value 81.103384
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 112.471150
iter 10 value 94.087320
iter 20 value 93.532351
iter 30 value 87.770619
iter 40 value 85.251843
iter 50 value 84.193159
iter 60 value 83.920986
iter 70 value 82.038142
iter 80 value 81.418339
iter 90 value 80.794585
iter 100 value 80.720062
final value 80.720062
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.347380
iter 10 value 96.272371
iter 20 value 88.740623
iter 30 value 87.829283
iter 40 value 84.648934
iter 50 value 82.542761
iter 60 value 82.040111
iter 70 value 81.919171
iter 80 value 81.722358
iter 90 value 81.447063
iter 100 value 80.763321
final value 80.763321
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.725438
iter 10 value 87.341931
iter 20 value 86.103720
iter 30 value 85.659734
iter 40 value 85.384028
iter 50 value 84.595143
iter 60 value 83.426042
iter 70 value 82.127429
iter 80 value 81.012216
iter 90 value 80.853969
iter 100 value 80.638283
final value 80.638283
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.549637
final value 94.054496
converged
Fitting Repeat 2
# weights: 103
initial value 102.181018
iter 10 value 94.054692
iter 20 value 94.052874
iter 30 value 87.649599
iter 40 value 83.040076
iter 50 value 82.718694
iter 60 value 82.716959
final value 82.716635
converged
Fitting Repeat 3
# weights: 103
initial value 95.191942
iter 10 value 89.399827
iter 20 value 87.004007
iter 30 value 85.509203
iter 30 value 85.509203
iter 30 value 85.509202
final value 85.509202
converged
Fitting Repeat 4
# weights: 103
initial value 95.111010
final value 94.054462
converged
Fitting Repeat 5
# weights: 103
initial value 99.959941
iter 10 value 94.054605
iter 20 value 94.005363
iter 30 value 93.672174
iter 40 value 93.671735
iter 50 value 93.632941
iter 60 value 93.626608
final value 93.626574
converged
Fitting Repeat 1
# weights: 305
initial value 103.492871
iter 10 value 94.057624
iter 20 value 93.622141
iter 30 value 83.378586
iter 40 value 82.924399
iter 50 value 82.596910
final value 82.596907
converged
Fitting Repeat 2
# weights: 305
initial value 96.753244
iter 10 value 93.967956
iter 20 value 85.459678
iter 30 value 85.374493
iter 40 value 85.370824
final value 85.370608
converged
Fitting Repeat 3
# weights: 305
initial value 109.041787
iter 10 value 93.655778
iter 20 value 93.652179
iter 30 value 93.439971
iter 40 value 93.436907
iter 50 value 86.107049
iter 60 value 82.092439
iter 70 value 80.812325
iter 80 value 80.091670
iter 90 value 80.083021
iter 100 value 80.082239
final value 80.082239
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 96.540332
iter 10 value 94.057922
iter 20 value 93.917636
iter 30 value 87.773644
iter 40 value 83.262880
iter 50 value 82.693673
iter 60 value 82.006516
iter 70 value 81.590267
iter 80 value 81.440367
final value 81.439985
converged
Fitting Repeat 5
# weights: 305
initial value 95.039361
iter 10 value 93.864947
iter 20 value 93.854421
final value 93.843043
converged
Fitting Repeat 1
# weights: 507
initial value 109.285252
iter 10 value 94.061270
iter 20 value 93.992753
iter 30 value 93.601524
final value 93.596396
converged
Fitting Repeat 2
# weights: 507
initial value 98.361400
iter 10 value 94.061089
iter 20 value 94.045105
iter 30 value 94.034973
iter 40 value 94.033965
iter 50 value 93.956233
iter 60 value 87.277320
iter 70 value 87.060794
iter 80 value 86.792711
iter 90 value 86.777108
iter 100 value 86.488416
final value 86.488416
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.612396
iter 10 value 94.061070
iter 20 value 94.053549
iter 30 value 92.531991
iter 40 value 85.363405
iter 50 value 84.545272
iter 60 value 83.520536
iter 70 value 83.494885
iter 80 value 82.503667
iter 90 value 80.848515
iter 100 value 79.115240
final value 79.115240
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.001272
iter 10 value 94.061284
iter 20 value 94.053450
iter 30 value 94.024409
iter 40 value 91.685774
iter 50 value 83.236854
iter 60 value 83.040091
iter 70 value 82.121197
iter 80 value 81.397491
iter 90 value 80.495323
iter 100 value 80.480515
final value 80.480515
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.248058
iter 10 value 93.857167
iter 20 value 93.547637
iter 30 value 93.544193
iter 40 value 84.760791
iter 50 value 83.128147
iter 60 value 83.014711
iter 70 value 82.704735
iter 80 value 81.980716
iter 90 value 80.486499
iter 100 value 79.606522
final value 79.606522
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.654557
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 94.798538
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.259585
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 94.076071
final value 94.052911
converged
Fitting Repeat 5
# weights: 103
initial value 101.876640
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 98.738640
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 105.474221
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 116.905331
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 96.664336
iter 10 value 93.836066
iter 10 value 93.836066
iter 10 value 93.836066
final value 93.836066
converged
Fitting Repeat 5
# weights: 305
initial value 96.179232
iter 10 value 93.710458
final value 93.704676
converged
Fitting Repeat 1
# weights: 507
initial value 136.000653
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 107.905267
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 124.590274
final value 93.836066
converged
Fitting Repeat 4
# weights: 507
initial value 125.913183
iter 10 value 91.322826
iter 20 value 90.054612
iter 30 value 89.255482
iter 40 value 89.221968
iter 40 value 89.221968
final value 89.221968
converged
Fitting Repeat 5
# weights: 507
initial value 96.666290
iter 10 value 93.836066
iter 10 value 93.836066
iter 10 value 93.836066
final value 93.836066
converged
Fitting Repeat 1
# weights: 103
initial value 97.089728
iter 10 value 93.830433
iter 20 value 92.019751
iter 30 value 89.388285
iter 40 value 89.057912
iter 50 value 87.364604
iter 60 value 85.755442
iter 70 value 84.049074
iter 80 value 84.002696
iter 90 value 83.479826
iter 100 value 82.769422
final value 82.769422
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.768041
iter 10 value 93.986998
iter 20 value 89.094208
iter 30 value 87.179295
iter 40 value 85.636564
iter 50 value 85.139016
iter 60 value 85.008697
iter 70 value 85.001901
iter 80 value 84.897735
iter 90 value 83.575997
iter 100 value 83.340878
final value 83.340878
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 106.084543
iter 10 value 93.936817
iter 20 value 90.057718
iter 30 value 85.379586
iter 40 value 84.537116
iter 50 value 84.082217
iter 60 value 83.883281
iter 70 value 83.763363
final value 83.763355
converged
Fitting Repeat 4
# weights: 103
initial value 102.981525
iter 10 value 94.056907
iter 20 value 94.011296
iter 30 value 92.212520
iter 40 value 90.974349
iter 50 value 88.686869
iter 60 value 87.508025
iter 70 value 86.917920
iter 80 value 84.559532
iter 90 value 83.991759
iter 100 value 83.790220
final value 83.790220
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.451102
iter 10 value 93.892518
iter 20 value 87.149009
iter 30 value 84.736676
iter 40 value 84.575231
iter 50 value 83.951488
iter 60 value 83.817132
iter 70 value 83.442942
iter 80 value 83.336920
final value 83.336843
converged
Fitting Repeat 1
# weights: 305
initial value 101.227032
iter 10 value 94.239730
iter 20 value 89.187586
iter 30 value 85.621058
iter 40 value 84.955613
iter 50 value 84.473313
iter 60 value 84.074165
iter 70 value 83.869960
iter 80 value 83.761846
iter 90 value 83.161424
iter 100 value 82.503173
final value 82.503173
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.969629
iter 10 value 92.497951
iter 20 value 89.109398
iter 30 value 88.687163
iter 40 value 88.392594
iter 50 value 86.854447
iter 60 value 83.989791
iter 70 value 82.979244
iter 80 value 82.689230
iter 90 value 82.174451
iter 100 value 81.723790
final value 81.723790
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.082354
iter 10 value 94.800333
iter 20 value 92.806990
iter 30 value 85.724604
iter 40 value 82.763711
iter 50 value 82.413661
iter 60 value 82.032692
iter 70 value 81.716498
iter 80 value 81.471404
iter 90 value 80.986066
iter 100 value 80.868336
final value 80.868336
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.423810
iter 10 value 93.769422
iter 20 value 90.045327
iter 30 value 87.151357
iter 40 value 83.586240
iter 50 value 82.352108
iter 60 value 82.254498
iter 70 value 82.209291
iter 80 value 81.956828
iter 90 value 81.478178
iter 100 value 81.105442
final value 81.105442
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.343912
iter 10 value 94.819391
iter 20 value 93.885644
iter 30 value 89.364043
iter 40 value 86.333965
iter 50 value 86.026043
iter 60 value 85.154454
iter 70 value 84.902619
iter 80 value 84.043478
iter 90 value 82.205973
iter 100 value 81.976335
final value 81.976335
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.112435
iter 10 value 95.708505
iter 20 value 89.648055
iter 30 value 87.915650
iter 40 value 86.029553
iter 50 value 83.404334
iter 60 value 82.646571
iter 70 value 82.109422
iter 80 value 81.756896
iter 90 value 81.483322
iter 100 value 81.372677
final value 81.372677
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.339227
iter 10 value 94.127467
iter 20 value 91.004297
iter 30 value 86.334014
iter 40 value 84.765485
iter 50 value 83.927996
iter 60 value 83.593253
iter 70 value 82.505231
iter 80 value 81.850749
iter 90 value 81.669660
iter 100 value 81.289995
final value 81.289995
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.384937
iter 10 value 91.530964
iter 20 value 87.356696
iter 30 value 86.669509
iter 40 value 83.425564
iter 50 value 82.098111
iter 60 value 81.328003
iter 70 value 80.760542
iter 80 value 80.561968
iter 90 value 80.496562
iter 100 value 80.453186
final value 80.453186
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.234763
iter 10 value 94.214472
iter 20 value 89.098481
iter 30 value 87.396514
iter 40 value 85.613827
iter 50 value 84.561112
iter 60 value 83.397417
iter 70 value 82.403598
iter 80 value 81.793382
iter 90 value 81.510256
iter 100 value 81.113519
final value 81.113519
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.822774
iter 10 value 94.541785
iter 20 value 93.337795
iter 30 value 85.840811
iter 40 value 84.929268
iter 50 value 84.536997
iter 60 value 84.346657
iter 70 value 83.964472
iter 80 value 82.712283
iter 90 value 82.006066
iter 100 value 81.790545
final value 81.790545
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.631105
final value 94.054679
converged
Fitting Repeat 2
# weights: 103
initial value 94.576257
iter 10 value 93.066993
iter 20 value 93.047682
final value 93.047548
converged
Fitting Repeat 3
# weights: 103
initial value 94.910137
final value 94.054426
converged
Fitting Repeat 4
# weights: 103
initial value 98.005578
iter 10 value 94.054520
iter 20 value 94.052967
final value 94.052916
converged
Fitting Repeat 5
# weights: 103
initial value 100.812918
final value 94.054671
converged
Fitting Repeat 1
# weights: 305
initial value 104.739911
iter 10 value 94.060853
iter 20 value 94.024361
iter 30 value 89.702516
iter 40 value 89.119391
iter 50 value 89.111975
iter 60 value 89.108416
iter 70 value 89.107731
iter 80 value 89.088088
iter 90 value 89.086308
iter 100 value 89.086280
final value 89.086280
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.634388
iter 10 value 94.058125
iter 20 value 94.053094
iter 30 value 91.376599
iter 40 value 88.689180
iter 50 value 88.547240
iter 60 value 88.518932
iter 70 value 88.518648
iter 80 value 88.516626
iter 90 value 88.516524
final value 88.516522
converged
Fitting Repeat 3
# weights: 305
initial value 97.396348
iter 10 value 94.057505
iter 20 value 93.993079
iter 30 value 87.101234
iter 40 value 85.677131
iter 50 value 83.076740
iter 60 value 81.973401
iter 70 value 81.835558
final value 81.835225
converged
Fitting Repeat 4
# weights: 305
initial value 118.921729
iter 10 value 94.057914
iter 20 value 94.052968
iter 30 value 93.937367
iter 40 value 89.503994
iter 50 value 88.752868
iter 60 value 85.680132
iter 70 value 83.723211
iter 80 value 83.042324
iter 90 value 82.753414
iter 100 value 82.085082
final value 82.085082
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.125088
iter 10 value 94.058774
iter 20 value 94.054125
final value 94.053628
converged
Fitting Repeat 1
# weights: 507
initial value 106.174781
iter 10 value 86.210310
iter 20 value 85.688630
iter 30 value 84.519261
iter 40 value 84.499284
iter 50 value 84.486383
iter 60 value 84.436120
iter 70 value 84.436027
iter 80 value 84.434298
iter 90 value 83.293156
iter 100 value 83.005062
final value 83.005062
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 98.146051
iter 10 value 94.063086
iter 20 value 94.054521
iter 30 value 93.844407
iter 40 value 93.184552
iter 50 value 92.687590
iter 60 value 92.685912
iter 70 value 92.685518
iter 80 value 87.048305
iter 90 value 87.044586
final value 87.044579
converged
Fitting Repeat 3
# weights: 507
initial value 101.539252
iter 10 value 93.844394
iter 20 value 93.836883
iter 30 value 93.836197
final value 93.836188
converged
Fitting Repeat 4
# weights: 507
initial value 105.060889
iter 10 value 87.287594
iter 20 value 85.547362
iter 30 value 83.126346
iter 40 value 82.955007
iter 50 value 82.952566
iter 60 value 82.950669
iter 70 value 82.950195
iter 80 value 82.943754
iter 90 value 82.522205
iter 100 value 82.028170
final value 82.028170
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.003588
iter 10 value 93.850724
iter 20 value 93.843406
iter 30 value 93.796489
iter 40 value 87.241790
iter 50 value 84.469432
iter 60 value 81.292229
iter 70 value 80.804640
iter 80 value 80.652074
iter 90 value 80.612883
iter 100 value 80.430007
final value 80.430007
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.540898
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.834383
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.995278
final value 94.443244
converged
Fitting Repeat 4
# weights: 103
initial value 99.396616
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.821812
iter 10 value 94.298933
final value 94.291892
converged
Fitting Repeat 1
# weights: 305
initial value 97.704105
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 96.784667
final value 94.144480
converged
Fitting Repeat 3
# weights: 305
initial value 96.062279
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 106.625779
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 121.561066
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 96.765944
final value 94.287626
converged
Fitting Repeat 2
# weights: 507
initial value 99.636907
iter 10 value 92.201217
iter 20 value 90.867090
iter 30 value 86.113096
iter 40 value 85.978212
iter 50 value 84.951731
iter 60 value 84.244502
final value 84.240925
converged
Fitting Repeat 3
# weights: 507
initial value 94.642233
iter 10 value 94.443403
final value 94.443246
converged
Fitting Repeat 4
# weights: 507
initial value 100.468486
iter 10 value 93.655692
iter 20 value 93.603739
final value 93.603727
converged
Fitting Repeat 5
# weights: 507
initial value 124.831308
final value 94.088889
converged
Fitting Repeat 1
# weights: 103
initial value 100.373747
iter 10 value 94.188963
iter 20 value 88.995702
iter 30 value 86.577193
iter 40 value 84.695446
iter 50 value 82.380182
iter 60 value 80.924410
iter 70 value 80.863158
final value 80.862120
converged
Fitting Repeat 2
# weights: 103
initial value 101.184508
iter 10 value 90.175041
iter 20 value 85.869395
iter 30 value 85.287862
iter 40 value 84.303808
iter 50 value 84.297337
iter 60 value 84.297096
final value 84.296978
converged
Fitting Repeat 3
# weights: 103
initial value 99.035116
iter 10 value 94.488612
iter 20 value 94.351413
iter 30 value 92.126723
iter 40 value 88.128027
iter 50 value 87.132022
iter 60 value 86.641485
iter 70 value 86.608545
iter 80 value 84.367214
iter 90 value 84.298596
iter 100 value 84.296982
final value 84.296982
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.894387
iter 10 value 94.462957
iter 20 value 94.057517
iter 30 value 83.476713
iter 40 value 82.670678
iter 50 value 82.101808
iter 60 value 81.494512
iter 70 value 80.980696
iter 80 value 80.806990
iter 90 value 80.709894
final value 80.709889
converged
Fitting Repeat 5
# weights: 103
initial value 105.120112
iter 10 value 94.446470
iter 20 value 93.331098
iter 30 value 88.604440
iter 40 value 87.491588
iter 50 value 86.871011
iter 60 value 85.512110
iter 70 value 84.486042
iter 80 value 84.435346
final value 84.435273
converged
Fitting Repeat 1
# weights: 305
initial value 107.284314
iter 10 value 94.444310
iter 20 value 92.800128
iter 30 value 87.851854
iter 40 value 86.489512
iter 50 value 85.358359
iter 60 value 82.990112
iter 70 value 81.444421
iter 80 value 81.043800
iter 90 value 80.742483
iter 100 value 80.576378
final value 80.576378
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 113.707925
iter 10 value 94.496356
iter 20 value 87.722831
iter 30 value 85.982423
iter 40 value 85.565083
iter 50 value 84.166811
iter 60 value 83.376421
iter 70 value 82.543946
iter 80 value 82.144165
iter 90 value 82.000441
iter 100 value 81.899523
final value 81.899523
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.536803
iter 10 value 94.487513
iter 20 value 88.184999
iter 30 value 83.638758
iter 40 value 82.487659
iter 50 value 81.993772
iter 60 value 81.754306
iter 70 value 81.332748
iter 80 value 81.132445
iter 90 value 80.521876
iter 100 value 80.012433
final value 80.012433
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.273750
iter 10 value 94.619227
iter 20 value 94.473344
iter 30 value 94.399225
iter 40 value 94.198707
iter 50 value 93.201861
iter 60 value 90.990345
iter 70 value 86.303678
iter 80 value 80.917888
iter 90 value 80.093516
iter 100 value 79.543804
final value 79.543804
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.886921
iter 10 value 94.481032
iter 20 value 93.967543
iter 30 value 89.050470
iter 40 value 87.889952
iter 50 value 87.747149
iter 60 value 87.426538
iter 70 value 86.639253
iter 80 value 86.606652
iter 90 value 83.754036
iter 100 value 81.554077
final value 81.554077
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 134.054759
iter 10 value 99.184375
iter 20 value 97.049662
iter 30 value 94.676058
iter 40 value 92.653089
iter 50 value 86.857253
iter 60 value 85.766481
iter 70 value 83.068576
iter 80 value 82.012566
iter 90 value 81.797556
iter 100 value 81.520868
final value 81.520868
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 115.747932
iter 10 value 98.851871
iter 20 value 87.961766
iter 30 value 82.999450
iter 40 value 81.154641
iter 50 value 80.105134
iter 60 value 80.004555
iter 70 value 79.828732
iter 80 value 79.414258
iter 90 value 78.967537
iter 100 value 78.859313
final value 78.859313
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 128.805035
iter 10 value 94.750527
iter 20 value 91.868515
iter 30 value 85.924095
iter 40 value 83.186577
iter 50 value 82.573728
iter 60 value 81.982098
iter 70 value 80.912437
iter 80 value 80.575968
iter 90 value 80.327942
iter 100 value 80.089941
final value 80.089941
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.523392
iter 10 value 94.525796
iter 20 value 94.384464
iter 30 value 88.705078
iter 40 value 86.428443
iter 50 value 83.532848
iter 60 value 81.745676
iter 70 value 80.486561
iter 80 value 80.218845
iter 90 value 80.061151
iter 100 value 79.917928
final value 79.917928
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.204298
iter 10 value 94.651554
iter 20 value 92.247420
iter 30 value 88.712569
iter 40 value 86.160780
iter 50 value 82.260074
iter 60 value 81.744679
iter 70 value 81.339692
iter 80 value 80.225427
iter 90 value 79.940214
iter 100 value 79.902024
final value 79.902024
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.611589
final value 94.485623
converged
Fitting Repeat 2
# weights: 103
initial value 99.803823
final value 94.485711
converged
Fitting Repeat 3
# weights: 103
initial value 94.697851
iter 10 value 92.432627
iter 20 value 91.866405
iter 30 value 91.866190
iter 40 value 91.666644
iter 50 value 91.666255
final value 91.666244
converged
Fitting Repeat 4
# weights: 103
initial value 103.846388
final value 94.485944
converged
Fitting Repeat 5
# weights: 103
initial value 104.260799
final value 94.485699
converged
Fitting Repeat 1
# weights: 305
initial value 106.944533
iter 10 value 94.489014
iter 20 value 94.132440
iter 30 value 85.933499
iter 40 value 85.044209
iter 50 value 84.709030
iter 60 value 84.651459
iter 70 value 84.586516
iter 80 value 84.584166
iter 90 value 84.575852
iter 100 value 84.410470
final value 84.410470
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 96.779120
iter 10 value 94.222052
iter 20 value 94.219981
iter 30 value 94.177547
iter 40 value 94.175972
iter 50 value 94.175782
iter 60 value 94.175088
iter 70 value 94.080829
final value 94.080827
converged
Fitting Repeat 3
# weights: 305
initial value 99.544218
iter 10 value 94.305544
iter 20 value 94.300980
iter 30 value 93.019600
iter 40 value 89.964712
iter 50 value 87.065379
iter 60 value 87.046439
iter 70 value 87.045153
iter 80 value 86.928512
iter 90 value 83.580868
iter 100 value 82.956751
final value 82.956751
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.313928
iter 10 value 94.113278
iter 20 value 94.108183
iter 30 value 94.093191
final value 94.093015
converged
Fitting Repeat 5
# weights: 305
initial value 115.742650
iter 10 value 94.489071
iter 20 value 94.211468
iter 30 value 87.346638
iter 40 value 86.153471
iter 50 value 81.048085
iter 60 value 79.665655
iter 70 value 79.581713
iter 80 value 79.576769
final value 79.576748
converged
Fitting Repeat 1
# weights: 507
initial value 103.689037
iter 10 value 93.882382
iter 20 value 93.876654
iter 30 value 93.744584
iter 40 value 93.610523
iter 50 value 92.637212
iter 60 value 85.236660
iter 70 value 84.929909
iter 80 value 84.889068
iter 90 value 84.879992
iter 100 value 83.656265
final value 83.656265
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 99.848650
iter 10 value 94.485140
iter 20 value 94.269150
iter 30 value 94.144895
iter 30 value 94.144895
iter 30 value 94.144895
final value 94.144895
converged
Fitting Repeat 3
# weights: 507
initial value 115.118142
iter 10 value 94.375052
iter 20 value 94.368326
iter 30 value 92.087789
iter 40 value 87.344067
iter 50 value 87.341138
iter 60 value 86.006714
iter 70 value 85.935459
iter 80 value 85.934158
iter 90 value 85.772927
iter 100 value 83.378006
final value 83.378006
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 98.970575
iter 10 value 94.492048
iter 20 value 93.775771
iter 30 value 88.608133
iter 40 value 87.428351
iter 50 value 86.617780
iter 60 value 86.617408
final value 86.617329
converged
Fitting Repeat 5
# weights: 507
initial value 115.586993
iter 10 value 94.493209
iter 20 value 94.212644
iter 30 value 86.998663
iter 40 value 85.564812
iter 50 value 81.862729
iter 60 value 79.820866
iter 70 value 78.693885
iter 80 value 78.631208
iter 90 value 78.619224
iter 100 value 78.619059
final value 78.619059
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.587573
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.081090
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.251522
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 94.580824
final value 93.939078
converged
Fitting Repeat 5
# weights: 103
initial value 109.896066
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 94.503864
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 107.738909
iter 10 value 94.336273
iter 20 value 90.372161
iter 30 value 85.923669
iter 40 value 85.645514
final value 85.645241
converged
Fitting Repeat 3
# weights: 305
initial value 95.043038
iter 10 value 94.313260
final value 94.266137
converged
Fitting Repeat 4
# weights: 305
initial value 94.747700
final value 94.354396
converged
Fitting Repeat 5
# weights: 305
initial value 95.597566
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 113.367038
iter 10 value 92.705519
iter 20 value 90.774005
iter 30 value 90.721094
final value 90.720836
converged
Fitting Repeat 2
# weights: 507
initial value 95.936491
iter 10 value 93.414835
iter 20 value 93.256512
iter 30 value 93.210778
iter 40 value 93.209666
final value 93.209614
converged
Fitting Repeat 3
# weights: 507
initial value 111.717945
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 108.620225
iter 10 value 94.354806
final value 94.354396
converged
Fitting Repeat 5
# weights: 507
initial value 106.227250
iter 10 value 93.683019
final value 93.683015
converged
Fitting Repeat 1
# weights: 103
initial value 100.641625
iter 10 value 94.676670
iter 20 value 94.462879
iter 30 value 85.945410
iter 40 value 84.121918
iter 50 value 82.820132
iter 60 value 82.000249
iter 70 value 81.413390
iter 80 value 80.565469
iter 90 value 80.533336
iter 100 value 80.529932
final value 80.529932
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 105.549485
iter 10 value 94.487733
iter 20 value 92.911732
iter 30 value 92.382687
iter 40 value 91.973541
iter 50 value 91.706536
final value 91.706147
converged
Fitting Repeat 3
# weights: 103
initial value 114.627127
iter 10 value 93.592432
iter 20 value 86.086791
iter 30 value 84.830387
iter 40 value 84.580001
iter 50 value 82.193804
iter 60 value 80.966574
iter 70 value 80.553738
iter 80 value 80.530271
final value 80.529932
converged
Fitting Repeat 4
# weights: 103
initial value 96.559961
iter 10 value 92.508359
iter 20 value 84.640091
iter 30 value 84.386202
iter 40 value 83.781713
iter 50 value 82.061397
iter 60 value 80.585159
iter 70 value 80.064302
iter 80 value 79.994833
final value 79.994758
converged
Fitting Repeat 5
# weights: 103
initial value 107.283134
iter 10 value 94.452068
iter 20 value 86.163702
iter 30 value 81.919180
iter 40 value 81.682474
iter 50 value 80.755016
iter 60 value 80.104513
iter 70 value 79.681918
final value 79.675526
converged
Fitting Repeat 1
# weights: 305
initial value 103.715277
iter 10 value 90.268412
iter 20 value 86.003629
iter 30 value 82.504111
iter 40 value 81.937265
iter 50 value 81.643838
iter 60 value 81.472904
iter 70 value 80.177240
iter 80 value 78.919266
iter 90 value 77.421400
iter 100 value 76.662336
final value 76.662336
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.459123
iter 10 value 95.839670
iter 20 value 85.152114
iter 30 value 83.108533
iter 40 value 81.890157
iter 50 value 80.670195
iter 60 value 80.266360
iter 70 value 80.145284
iter 80 value 79.861921
iter 90 value 77.646521
iter 100 value 76.759017
final value 76.759017
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.060433
iter 10 value 93.851653
iter 20 value 87.925815
iter 30 value 80.612235
iter 40 value 79.232330
iter 50 value 78.805724
iter 60 value 78.247354
iter 70 value 77.027931
iter 80 value 76.470084
iter 90 value 76.275965
iter 100 value 76.270984
final value 76.270984
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.978544
iter 10 value 94.100878
iter 20 value 85.474880
iter 30 value 80.762804
iter 40 value 78.961428
iter 50 value 77.521958
iter 60 value 76.796867
iter 70 value 76.628797
iter 80 value 76.585967
iter 90 value 76.539934
iter 100 value 76.487580
final value 76.487580
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.337336
iter 10 value 91.296798
iter 20 value 82.785095
iter 30 value 80.297570
iter 40 value 78.384763
iter 50 value 77.092937
iter 60 value 76.961765
iter 70 value 76.909340
iter 80 value 76.900746
iter 90 value 76.873505
iter 100 value 76.660101
final value 76.660101
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.814714
iter 10 value 91.418111
iter 20 value 85.569525
iter 30 value 83.639681
iter 40 value 81.051409
iter 50 value 78.563179
iter 60 value 78.248237
iter 70 value 77.334602
iter 80 value 76.654737
iter 90 value 76.512798
iter 100 value 76.375796
final value 76.375796
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 146.818024
iter 10 value 91.724384
iter 20 value 84.979979
iter 30 value 81.852594
iter 40 value 80.792423
iter 50 value 79.664877
iter 60 value 79.182859
iter 70 value 77.272233
iter 80 value 76.696895
iter 90 value 76.454877
iter 100 value 76.158445
final value 76.158445
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.855570
iter 10 value 94.342729
iter 20 value 88.159709
iter 30 value 85.714612
iter 40 value 83.375040
iter 50 value 81.218833
iter 60 value 80.538323
iter 70 value 80.274334
iter 80 value 80.250732
iter 90 value 80.246141
iter 100 value 80.218994
final value 80.218994
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 131.199949
iter 10 value 94.241240
iter 20 value 90.102968
iter 30 value 84.715475
iter 40 value 83.327407
iter 50 value 81.970761
iter 60 value 81.222884
iter 70 value 80.713836
iter 80 value 80.193021
iter 90 value 79.846450
iter 100 value 79.290558
final value 79.290558
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.720379
iter 10 value 94.706546
iter 20 value 94.393001
iter 30 value 85.266999
iter 40 value 82.852429
iter 50 value 81.689905
iter 60 value 79.936724
iter 70 value 78.046910
iter 80 value 77.459251
iter 90 value 77.156578
iter 100 value 76.659092
final value 76.659092
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.577685
final value 94.486033
converged
Fitting Repeat 2
# weights: 103
initial value 109.352060
final value 94.355966
converged
Fitting Repeat 3
# weights: 103
initial value 109.967209
final value 94.485761
converged
Fitting Repeat 4
# weights: 103
initial value 95.771468
final value 94.485846
converged
Fitting Repeat 5
# weights: 103
initial value 98.135920
iter 10 value 92.396793
iter 20 value 91.978625
iter 30 value 91.950161
iter 40 value 91.780353
final value 91.780142
converged
Fitting Repeat 1
# weights: 305
initial value 99.862403
iter 10 value 94.487688
iter 20 value 94.263448
iter 30 value 87.509810
iter 40 value 83.539983
iter 50 value 79.347654
iter 60 value 76.003024
iter 70 value 74.969223
iter 80 value 74.928367
iter 90 value 74.759284
iter 100 value 74.673812
final value 74.673812
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.434939
iter 10 value 94.358970
iter 20 value 94.355501
iter 30 value 93.995568
iter 40 value 87.214945
iter 50 value 81.770593
iter 60 value 80.599821
iter 70 value 77.722558
iter 80 value 77.151256
iter 90 value 77.113341
iter 100 value 76.996244
final value 76.996244
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.147774
iter 10 value 93.851878
iter 20 value 91.496627
iter 30 value 80.876313
iter 40 value 79.118642
iter 50 value 78.984283
final value 78.980415
converged
Fitting Repeat 4
# weights: 305
initial value 95.867710
iter 10 value 94.489044
iter 20 value 93.576637
iter 30 value 81.705404
iter 40 value 81.691789
iter 50 value 81.576349
iter 60 value 81.185768
iter 70 value 81.097833
iter 80 value 80.804423
iter 90 value 80.782032
iter 100 value 80.130860
final value 80.130860
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 95.581629
iter 10 value 94.488921
iter 20 value 94.358768
iter 30 value 87.901361
iter 40 value 81.028274
iter 50 value 80.442053
iter 60 value 78.846159
iter 70 value 78.815452
final value 78.814637
converged
Fitting Repeat 1
# weights: 507
initial value 115.600999
iter 10 value 94.362665
iter 20 value 94.143997
iter 30 value 81.776514
final value 81.744832
converged
Fitting Repeat 2
# weights: 507
initial value 100.983334
iter 10 value 94.362661
iter 20 value 92.366533
iter 30 value 80.927028
iter 40 value 80.363001
iter 50 value 80.312101
iter 60 value 80.311729
final value 80.310782
converged
Fitting Repeat 3
# weights: 507
initial value 120.788827
iter 10 value 94.343419
iter 20 value 94.333397
iter 30 value 92.756129
iter 40 value 92.094278
iter 50 value 91.163199
iter 60 value 91.118835
final value 91.118759
converged
Fitting Repeat 4
# weights: 507
initial value 105.186537
iter 10 value 94.362817
iter 20 value 93.630298
iter 30 value 93.628781
iter 40 value 93.622337
iter 50 value 92.748666
iter 60 value 90.683011
iter 70 value 90.678880
final value 90.678872
converged
Fitting Repeat 5
# weights: 507
initial value 103.848800
iter 10 value 93.946743
iter 20 value 93.505604
iter 30 value 93.499071
iter 40 value 83.880215
iter 50 value 80.922121
iter 60 value 80.920491
iter 70 value 80.433465
iter 80 value 80.421958
iter 90 value 80.419400
final value 80.419370
converged
Fitting Repeat 1
# weights: 507
initial value 126.006831
iter 10 value 117.308965
iter 20 value 116.883644
iter 30 value 116.880107
iter 40 value 116.878181
iter 50 value 116.725872
iter 60 value 106.589658
iter 70 value 103.636841
iter 80 value 102.700160
iter 90 value 102.684940
final value 102.683757
converged
Fitting Repeat 2
# weights: 507
initial value 120.880582
iter 10 value 117.898293
iter 20 value 117.778749
iter 30 value 115.396632
iter 40 value 106.336704
iter 50 value 105.754694
iter 60 value 105.156788
iter 70 value 104.613624
iter 80 value 102.322825
iter 90 value 101.258503
iter 100 value 101.237031
final value 101.237031
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 145.536238
iter 10 value 117.767532
iter 20 value 115.959885
iter 30 value 108.129583
iter 40 value 104.150205
final value 104.057080
converged
Fitting Repeat 4
# weights: 507
initial value 121.172431
iter 10 value 117.736519
iter 20 value 117.730534
iter 30 value 116.768455
iter 40 value 115.211553
iter 50 value 111.632325
iter 60 value 111.627160
iter 70 value 110.815238
iter 80 value 110.807930
final value 110.807630
converged
Fitting Repeat 5
# weights: 507
initial value 144.655828
iter 10 value 111.362653
iter 20 value 104.556995
iter 30 value 103.810126
iter 40 value 103.599881
iter 50 value 103.597458
iter 60 value 103.594946
iter 70 value 103.594628
iter 80 value 103.594083
final value 103.593846
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri Apr 17 20:16:33 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.913 0.773 76.432
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 17.001 | 0.078 | 17.128 | |
| FreqInteractors | 0.157 | 0.007 | 0.164 | |
| calculateAAC | 0.012 | 0.001 | 0.013 | |
| calculateAutocor | 0.130 | 0.007 | 0.137 | |
| calculateCTDC | 0.029 | 0.001 | 0.029 | |
| calculateCTDD | 0.166 | 0.011 | 0.177 | |
| calculateCTDT | 0.057 | 0.002 | 0.059 | |
| calculateCTriad | 0.141 | 0.008 | 0.149 | |
| calculateDC | 0.032 | 0.004 | 0.037 | |
| calculateF | 0.091 | 0.001 | 0.092 | |
| calculateKSAAP | 0.035 | 0.003 | 0.038 | |
| calculateQD_Sm | 0.684 | 0.027 | 0.713 | |
| calculateTC | 0.570 | 0.053 | 0.628 | |
| calculateTC_Sm | 0.103 | 0.008 | 0.111 | |
| corr_plot | 17.138 | 0.104 | 17.291 | |
| enrichfindP | 0.205 | 0.042 | 7.334 | |
| enrichfind_hp | 0.015 | 0.002 | 0.930 | |
| enrichplot | 0.167 | 0.003 | 0.171 | |
| filter_missing_values | 0 | 0 | 0 | |
| getFASTA | 0.032 | 0.007 | 3.177 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.001 | 0.000 | 0.000 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.001 | |
| plotPPI | 0.031 | 0.001 | 0.034 | |
| pred_ensembel | 6.201 | 0.174 | 5.693 | |
| var_imp | 16.993 | 0.137 | 17.249 | |