| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-13 11:36 -0400 (Mon, 13 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4919 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4632 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1020/2390 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-04-12 20:12:25 -0400 (Sun, 12 Apr 2026) |
| EndedAt: 2026-04-12 20:15:42 -0400 (Sun, 12 Apr 2026) |
| EllapsedTime: 197.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 alpha (2026-04-08 r89818)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-13 00:12:25 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 17.177 0.152 17.450
FSmethod 17.189 0.098 17.855
corr_plot 17.151 0.123 17.345
pred_ensembel 6.324 0.197 5.766
enrichfindP 0.200 0.040 8.987
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 alpha (2026-04-08 r89818)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 105.864091
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 98.056395
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 110.085920
iter 10 value 94.275365
final value 94.275363
converged
Fitting Repeat 4
# weights: 103
initial value 106.169749
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 101.980063
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 124.471775
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 99.168909
final value 94.252920
converged
Fitting Repeat 3
# weights: 305
initial value 97.186934
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 109.354958
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 102.438293
iter 10 value 93.846614
iter 20 value 93.557386
iter 30 value 92.342294
iter 40 value 85.165801
iter 50 value 84.164910
iter 60 value 82.621980
iter 70 value 82.620061
iter 80 value 82.489554
iter 90 value 82.483344
final value 82.483333
converged
Fitting Repeat 1
# weights: 507
initial value 110.252048
iter 10 value 94.479532
iter 10 value 94.479532
iter 10 value 94.479532
final value 94.479532
converged
Fitting Repeat 2
# weights: 507
initial value 106.013143
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 101.582276
iter 10 value 94.275364
final value 94.275362
converged
Fitting Repeat 4
# weights: 507
initial value 107.600850
iter 10 value 92.613983
iter 20 value 89.305116
iter 30 value 87.020773
iter 40 value 86.051878
iter 50 value 80.163180
iter 60 value 80.085818
iter 70 value 79.853783
iter 80 value 79.842116
iter 90 value 79.720658
final value 79.712864
converged
Fitting Repeat 5
# weights: 507
initial value 98.413837
final value 94.275362
converged
Fitting Repeat 1
# weights: 103
initial value 99.375675
iter 10 value 94.488593
iter 20 value 91.505301
iter 30 value 84.941332
iter 40 value 82.900150
iter 50 value 82.508517
iter 60 value 82.271777
iter 70 value 80.652729
iter 80 value 79.909670
iter 90 value 79.742598
iter 100 value 79.736877
final value 79.736877
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.137375
iter 10 value 94.483699
iter 20 value 94.334903
iter 30 value 94.325233
iter 40 value 94.018782
iter 50 value 86.609066
iter 60 value 83.615061
iter 70 value 83.262127
iter 80 value 83.162187
iter 90 value 82.065547
iter 100 value 81.351317
final value 81.351317
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 112.415335
iter 10 value 93.873811
iter 20 value 87.240381
iter 30 value 85.970569
iter 40 value 84.960754
iter 50 value 84.353741
iter 60 value 84.254114
final value 84.254057
converged
Fitting Repeat 4
# weights: 103
initial value 96.354100
iter 10 value 94.502360
iter 20 value 94.483741
iter 30 value 93.775108
iter 40 value 85.535742
iter 50 value 83.518263
iter 60 value 81.960530
iter 70 value 81.574495
iter 80 value 81.386474
iter 90 value 81.373479
final value 81.373440
converged
Fitting Repeat 5
# weights: 103
initial value 96.680626
iter 10 value 94.468842
iter 20 value 93.998699
iter 30 value 86.146623
iter 40 value 81.980379
iter 50 value 81.438251
iter 60 value 81.406642
iter 70 value 81.378783
final value 81.373437
converged
Fitting Repeat 1
# weights: 305
initial value 105.439213
iter 10 value 94.526399
iter 20 value 91.554217
iter 30 value 90.569840
iter 40 value 83.370615
iter 50 value 82.871134
iter 60 value 81.368132
iter 70 value 80.848250
iter 80 value 80.166777
iter 90 value 79.290319
iter 100 value 79.039881
final value 79.039881
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.505628
iter 10 value 94.611950
iter 20 value 94.245570
iter 30 value 91.630606
iter 40 value 91.396783
iter 50 value 90.424566
iter 60 value 86.021764
iter 70 value 83.903616
iter 80 value 83.276502
iter 90 value 81.220830
iter 100 value 79.803311
final value 79.803311
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.823247
iter 10 value 94.487992
iter 20 value 91.040600
iter 30 value 88.902464
iter 40 value 82.733359
iter 50 value 80.647474
iter 60 value 79.835941
iter 70 value 79.379786
iter 80 value 78.965362
iter 90 value 78.615936
iter 100 value 78.517644
final value 78.517644
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 114.765515
iter 10 value 92.372407
iter 20 value 89.632962
iter 30 value 83.911447
iter 40 value 82.724810
iter 50 value 82.222247
iter 60 value 81.949606
iter 70 value 81.868056
iter 80 value 81.721833
iter 90 value 81.537657
iter 100 value 80.409943
final value 80.409943
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 110.813850
iter 10 value 94.464667
iter 20 value 94.208143
iter 30 value 92.099180
iter 40 value 84.437658
iter 50 value 83.102979
iter 60 value 81.771969
iter 70 value 81.001340
iter 80 value 80.826974
iter 90 value 80.224929
iter 100 value 79.960914
final value 79.960914
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 125.434106
iter 10 value 97.481259
iter 20 value 90.737525
iter 30 value 86.417581
iter 40 value 81.638358
iter 50 value 81.060615
iter 60 value 80.567234
iter 70 value 79.987945
iter 80 value 79.693240
iter 90 value 79.342980
iter 100 value 78.514762
final value 78.514762
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.662293
iter 10 value 93.794560
iter 20 value 89.094025
iter 30 value 87.303795
iter 40 value 85.230637
iter 50 value 84.371775
iter 60 value 84.079276
iter 70 value 79.908465
iter 80 value 78.912517
iter 90 value 78.640590
iter 100 value 78.510854
final value 78.510854
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.328835
iter 10 value 93.720427
iter 20 value 87.896247
iter 30 value 85.990773
iter 40 value 82.866108
iter 50 value 82.207939
iter 60 value 80.732542
iter 70 value 79.579390
iter 80 value 79.405089
iter 90 value 79.319533
iter 100 value 79.203535
final value 79.203535
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.426686
iter 10 value 93.534438
iter 20 value 83.633959
iter 30 value 81.804967
iter 40 value 81.610019
iter 50 value 81.017676
iter 60 value 80.014372
iter 70 value 79.760869
iter 80 value 79.423522
iter 90 value 78.921618
iter 100 value 78.854338
final value 78.854338
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 120.258993
iter 10 value 94.589581
iter 20 value 85.196857
iter 30 value 83.482716
iter 40 value 83.083765
iter 50 value 81.468002
iter 60 value 81.149582
iter 70 value 79.616347
iter 80 value 78.591604
iter 90 value 78.092479
iter 100 value 78.065383
final value 78.065383
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.836548
final value 94.485861
converged
Fitting Repeat 2
# weights: 103
initial value 97.718190
final value 94.485923
converged
Fitting Repeat 3
# weights: 103
initial value 97.349408
iter 10 value 93.237681
iter 20 value 93.221775
iter 30 value 93.218927
final value 93.218925
converged
Fitting Repeat 4
# weights: 103
initial value 95.698761
iter 10 value 94.444920
final value 94.047359
converged
Fitting Repeat 5
# weights: 103
initial value 96.027798
final value 94.485924
converged
Fitting Repeat 1
# weights: 305
initial value 97.017727
iter 10 value 94.280210
iter 20 value 94.275985
final value 94.275735
converged
Fitting Repeat 2
# weights: 305
initial value 100.630188
iter 10 value 94.489364
iter 20 value 94.460027
iter 30 value 83.955567
final value 83.899680
converged
Fitting Repeat 3
# weights: 305
initial value 110.177488
iter 10 value 94.489201
iter 20 value 94.484280
iter 30 value 93.663289
iter 40 value 89.329753
iter 50 value 86.531695
iter 60 value 86.322666
iter 70 value 86.150155
iter 80 value 82.916330
iter 90 value 82.381058
iter 100 value 82.375399
final value 82.375399
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.903307
iter 10 value 94.280406
iter 20 value 94.229215
iter 30 value 94.228841
iter 40 value 88.888509
iter 50 value 82.728604
iter 60 value 82.619201
iter 70 value 82.519231
iter 80 value 82.484362
final value 82.483973
converged
Fitting Repeat 5
# weights: 305
initial value 100.417931
iter 10 value 94.489029
iter 20 value 94.275729
final value 94.275521
converged
Fitting Repeat 1
# weights: 507
initial value 102.428251
iter 10 value 94.239105
iter 20 value 94.234636
iter 30 value 94.233049
iter 40 value 90.889256
iter 50 value 90.304070
iter 60 value 89.771608
iter 70 value 89.738941
iter 80 value 89.738407
iter 90 value 89.736010
iter 100 value 89.735538
final value 89.735538
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.393309
iter 10 value 94.492211
iter 20 value 93.913770
final value 93.913358
converged
Fitting Repeat 3
# weights: 507
initial value 101.321886
iter 10 value 94.307897
iter 20 value 94.300351
iter 30 value 94.298250
iter 40 value 94.296992
iter 50 value 91.781129
iter 60 value 90.598605
iter 70 value 86.545509
iter 80 value 82.818087
iter 90 value 81.870956
iter 100 value 81.870525
final value 81.870525
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.350859
iter 10 value 93.942934
iter 20 value 93.936822
iter 30 value 93.876647
iter 40 value 93.859611
final value 93.856712
converged
Fitting Repeat 5
# weights: 507
initial value 106.635650
iter 10 value 94.283307
iter 20 value 94.076821
iter 30 value 83.519531
iter 40 value 82.579008
iter 50 value 80.666664
iter 60 value 77.382672
iter 70 value 77.105207
iter 80 value 77.049061
final value 77.048462
converged
Fitting Repeat 1
# weights: 103
initial value 95.299872
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.130780
iter 10 value 91.627059
iter 20 value 86.142333
iter 30 value 86.118968
final value 86.118535
converged
Fitting Repeat 3
# weights: 103
initial value 101.400389
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.807999
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.055493
final value 94.466823
converged
Fitting Repeat 1
# weights: 305
initial value 102.252483
iter 10 value 94.395062
iter 10 value 94.395062
iter 10 value 94.395062
final value 94.395062
converged
Fitting Repeat 2
# weights: 305
initial value 100.725573
iter 10 value 92.993116
iter 20 value 87.947599
final value 87.947560
converged
Fitting Repeat 3
# weights: 305
initial value 100.284233
iter 10 value 91.183495
iter 20 value 87.259359
iter 30 value 87.252740
iter 40 value 87.252628
final value 87.252614
converged
Fitting Repeat 4
# weights: 305
initial value 98.033165
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 102.734913
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 108.070415
iter 10 value 87.950243
final value 87.947559
converged
Fitting Repeat 2
# weights: 507
initial value 100.038617
iter 10 value 94.469696
iter 20 value 94.466825
final value 94.466823
converged
Fitting Repeat 3
# weights: 507
initial value 107.450231
iter 10 value 94.466805
final value 94.309797
converged
Fitting Repeat 4
# weights: 507
initial value 100.813968
final value 94.466823
converged
Fitting Repeat 5
# weights: 507
initial value 110.602175
iter 10 value 93.935239
iter 10 value 93.935238
iter 10 value 93.935238
final value 93.935238
converged
Fitting Repeat 1
# weights: 103
initial value 103.782288
iter 10 value 94.420345
iter 20 value 94.093014
iter 30 value 94.032220
iter 40 value 92.191411
iter 50 value 86.343172
iter 60 value 85.294379
iter 70 value 84.554616
iter 80 value 84.349384
iter 90 value 84.345599
iter 90 value 84.345599
iter 90 value 84.345599
final value 84.345599
converged
Fitting Repeat 2
# weights: 103
initial value 107.756521
iter 10 value 94.491787
iter 20 value 94.468512
iter 30 value 94.014534
iter 40 value 93.116441
iter 50 value 86.705217
iter 60 value 86.024082
iter 70 value 85.842442
iter 80 value 85.352132
iter 90 value 84.954574
iter 100 value 84.588449
final value 84.588449
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 107.689463
iter 10 value 94.445142
iter 20 value 90.517254
iter 30 value 87.187472
iter 40 value 86.741053
iter 50 value 86.106575
iter 60 value 85.432510
iter 70 value 85.255049
final value 85.243080
converged
Fitting Repeat 4
# weights: 103
initial value 96.356350
iter 10 value 94.509072
iter 20 value 93.672638
iter 30 value 89.051613
iter 40 value 87.482295
iter 50 value 84.100974
iter 60 value 83.900234
final value 83.898671
converged
Fitting Repeat 5
# weights: 103
initial value 99.167659
iter 10 value 94.488512
iter 20 value 88.343292
iter 30 value 88.117212
iter 40 value 87.758231
iter 50 value 84.412662
iter 60 value 84.345609
final value 84.345599
converged
Fitting Repeat 1
# weights: 305
initial value 99.652864
iter 10 value 94.611777
iter 20 value 91.616648
iter 30 value 85.643292
iter 40 value 84.980148
iter 50 value 82.987465
iter 60 value 82.325820
iter 70 value 80.197927
iter 80 value 79.705357
iter 90 value 79.543348
iter 100 value 79.483091
final value 79.483091
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 113.021127
iter 10 value 94.291117
iter 20 value 87.054365
iter 30 value 86.619493
iter 40 value 86.250669
iter 50 value 85.947666
iter 60 value 84.831884
iter 70 value 81.419452
iter 80 value 79.913464
iter 90 value 79.669810
iter 100 value 79.471547
final value 79.471547
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.778707
iter 10 value 94.441976
iter 20 value 88.190301
iter 30 value 86.647246
iter 40 value 82.066257
iter 50 value 80.511234
iter 60 value 80.278354
iter 70 value 79.988532
iter 80 value 79.145338
iter 90 value 79.097378
iter 100 value 79.072623
final value 79.072623
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.855486
iter 10 value 94.108042
iter 20 value 86.826001
iter 30 value 85.234277
iter 40 value 84.415439
iter 50 value 83.499501
iter 60 value 82.133284
iter 70 value 81.763974
iter 80 value 80.727625
iter 90 value 80.373748
iter 100 value 79.705007
final value 79.705007
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.289064
iter 10 value 94.354415
iter 20 value 85.758685
iter 30 value 83.296732
iter 40 value 82.595818
iter 50 value 81.550664
iter 60 value 79.652697
iter 70 value 79.358926
iter 80 value 79.033295
iter 90 value 78.888364
iter 100 value 78.837802
final value 78.837802
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.505726
iter 10 value 94.564824
iter 20 value 88.723803
iter 30 value 88.336294
iter 40 value 87.402264
iter 50 value 86.171774
iter 60 value 83.436611
iter 70 value 81.519309
iter 80 value 80.852400
iter 90 value 80.759164
iter 100 value 80.092181
final value 80.092181
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 122.882872
iter 10 value 94.524774
iter 20 value 94.283125
iter 30 value 87.546386
iter 40 value 83.441012
iter 50 value 82.652108
iter 60 value 81.076163
iter 70 value 80.085862
iter 80 value 79.073286
iter 90 value 78.858522
iter 100 value 78.681664
final value 78.681664
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.070202
iter 10 value 94.383714
iter 20 value 91.531326
iter 30 value 86.339362
iter 40 value 83.907672
iter 50 value 82.951512
iter 60 value 82.559194
iter 70 value 82.383210
iter 80 value 81.939020
iter 90 value 81.818841
iter 100 value 79.618047
final value 79.618047
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.845341
iter 10 value 92.800621
iter 20 value 89.199612
iter 30 value 85.264608
iter 40 value 83.731426
iter 50 value 82.143879
iter 60 value 81.626601
iter 70 value 81.385207
iter 80 value 81.109709
iter 90 value 80.928984
iter 100 value 80.920900
final value 80.920900
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.039736
iter 10 value 93.263067
iter 20 value 85.415260
iter 30 value 83.299545
iter 40 value 82.045399
iter 50 value 80.487693
iter 60 value 79.995459
iter 70 value 79.692137
iter 80 value 79.410363
iter 90 value 79.014366
iter 100 value 78.865530
final value 78.865530
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.535569
final value 94.485680
converged
Fitting Repeat 2
# weights: 103
initial value 103.311249
iter 10 value 94.485799
iter 20 value 94.478786
iter 30 value 92.630262
iter 40 value 92.629892
final value 92.629382
converged
Fitting Repeat 3
# weights: 103
initial value 103.013185
final value 94.485793
converged
Fitting Repeat 4
# weights: 103
initial value 104.217476
final value 94.468268
converged
Fitting Repeat 5
# weights: 103
initial value 94.664717
iter 10 value 94.485940
iter 20 value 94.484226
final value 94.484216
converged
Fitting Repeat 1
# weights: 305
initial value 102.486158
iter 10 value 94.485726
iter 20 value 93.965454
iter 30 value 88.660011
iter 40 value 88.611078
iter 50 value 88.585473
iter 60 value 88.576876
iter 70 value 88.565341
iter 80 value 88.563319
iter 90 value 87.199199
iter 100 value 86.631324
final value 86.631324
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 96.250807
iter 10 value 94.407244
iter 20 value 90.573853
iter 30 value 89.460009
iter 40 value 89.341638
iter 50 value 86.686595
iter 60 value 86.469515
iter 70 value 85.531403
iter 80 value 85.524922
final value 85.524888
converged
Fitting Repeat 3
# weights: 305
initial value 98.863135
iter 10 value 93.927383
iter 20 value 93.899633
iter 30 value 93.897872
final value 93.894586
converged
Fitting Repeat 4
# weights: 305
initial value 103.879886
iter 10 value 94.489072
iter 20 value 94.005102
final value 93.974633
converged
Fitting Repeat 5
# weights: 305
initial value 99.394404
iter 10 value 94.488986
iter 20 value 94.478373
iter 30 value 85.483195
iter 40 value 85.467437
final value 85.467404
converged
Fitting Repeat 1
# weights: 507
initial value 109.430273
iter 10 value 94.501773
iter 20 value 94.492938
iter 30 value 94.015414
iter 40 value 94.000560
iter 50 value 93.998175
iter 60 value 93.991979
iter 70 value 93.974587
final value 93.974374
converged
Fitting Repeat 2
# weights: 507
initial value 125.130119
iter 10 value 94.491968
iter 20 value 94.257294
iter 30 value 89.361330
iter 40 value 89.353851
iter 50 value 86.332047
iter 60 value 85.468437
final value 85.468395
converged
Fitting Repeat 3
# weights: 507
initial value 95.660419
iter 10 value 85.145489
iter 20 value 85.099451
iter 30 value 85.002213
iter 40 value 83.249254
iter 50 value 79.761831
iter 60 value 79.518296
iter 70 value 79.444315
iter 80 value 79.373520
iter 90 value 79.334742
iter 100 value 79.280120
final value 79.280120
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.445432
iter 10 value 94.312656
iter 20 value 94.221114
iter 30 value 94.215574
iter 40 value 94.210761
iter 50 value 94.182900
iter 60 value 89.656820
iter 70 value 82.891208
iter 80 value 82.859699
iter 90 value 82.800140
iter 100 value 82.065208
final value 82.065208
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 97.455449
iter 10 value 94.475022
iter 20 value 94.009139
iter 30 value 90.794028
iter 40 value 90.331697
iter 50 value 90.301933
iter 60 value 90.301658
final value 90.301499
converged
Fitting Repeat 1
# weights: 103
initial value 94.688593
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 113.491120
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 99.961415
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.209651
final value 94.032967
converged
Fitting Repeat 5
# weights: 103
initial value 99.059887
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 95.978562
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 96.408236
final value 93.900001
converged
Fitting Repeat 3
# weights: 305
initial value 95.898535
iter 10 value 93.991537
final value 93.991526
converged
Fitting Repeat 4
# weights: 305
initial value 101.929148
iter 10 value 93.886149
iter 20 value 93.884583
final value 93.884578
converged
Fitting Repeat 5
# weights: 305
initial value 95.186027
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 110.827289
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 99.896259
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 100.709646
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 100.771907
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 94.145088
final value 94.032967
converged
Fitting Repeat 1
# weights: 103
initial value 95.821103
iter 10 value 90.755976
iter 20 value 84.330162
iter 30 value 83.532925
iter 40 value 81.908857
iter 50 value 81.662118
iter 60 value 81.533065
iter 70 value 81.429280
iter 80 value 81.407108
final value 81.407095
converged
Fitting Repeat 2
# weights: 103
initial value 99.611912
iter 10 value 94.057553
iter 20 value 93.942176
iter 30 value 91.811548
iter 40 value 89.092018
iter 50 value 84.777670
iter 60 value 84.609432
iter 70 value 84.248201
iter 80 value 82.316066
iter 90 value 81.647239
iter 100 value 81.455652
final value 81.455652
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 104.138890
iter 10 value 94.067906
iter 20 value 93.879497
iter 30 value 88.239144
iter 40 value 85.190042
iter 50 value 82.713986
iter 60 value 82.072637
iter 70 value 81.824770
iter 80 value 81.421158
iter 90 value 81.198752
iter 100 value 80.553742
final value 80.553742
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 101.295618
iter 10 value 94.023266
iter 20 value 89.630874
iter 30 value 85.822105
iter 40 value 84.988635
iter 50 value 84.682023
iter 60 value 81.587718
iter 70 value 80.715792
iter 80 value 80.681351
iter 90 value 80.434553
iter 100 value 80.209118
final value 80.209118
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 109.570711
iter 10 value 93.747586
iter 20 value 92.979022
iter 30 value 92.191049
iter 40 value 92.130326
iter 50 value 92.012328
iter 60 value 91.685121
iter 70 value 91.683838
iter 80 value 91.682256
iter 80 value 91.682255
iter 80 value 91.682255
final value 91.682255
converged
Fitting Repeat 1
# weights: 305
initial value 115.842064
iter 10 value 93.345095
iter 20 value 86.718969
iter 30 value 85.432424
iter 40 value 84.137701
iter 50 value 83.535474
iter 60 value 82.720312
iter 70 value 81.105799
iter 80 value 80.658911
iter 90 value 80.196566
iter 100 value 79.571175
final value 79.571175
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.333421
iter 10 value 93.872375
iter 20 value 93.629202
iter 30 value 85.771358
iter 40 value 85.549541
iter 50 value 85.091811
iter 60 value 83.118877
iter 70 value 82.877054
iter 80 value 82.323444
iter 90 value 80.299339
iter 100 value 79.348381
final value 79.348381
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.715076
iter 10 value 94.051083
iter 20 value 88.967596
iter 30 value 85.826763
iter 40 value 85.341178
iter 50 value 84.050962
iter 60 value 81.320433
iter 70 value 80.919199
iter 80 value 80.494328
iter 90 value 80.443561
iter 100 value 80.389573
final value 80.389573
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 98.640874
iter 10 value 94.065178
iter 20 value 93.543752
iter 30 value 85.824879
iter 40 value 84.515329
iter 50 value 82.140068
iter 60 value 82.034367
iter 70 value 81.581356
iter 80 value 81.396804
iter 90 value 80.933103
iter 100 value 80.629308
final value 80.629308
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.793076
iter 10 value 93.928458
iter 20 value 87.194368
iter 30 value 82.538200
iter 40 value 81.224790
iter 50 value 79.309018
iter 60 value 79.231084
iter 70 value 79.200668
iter 80 value 79.090974
iter 90 value 78.850718
iter 100 value 78.760407
final value 78.760407
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.011083
iter 10 value 93.054705
iter 20 value 85.536083
iter 30 value 85.214681
iter 40 value 84.835251
iter 50 value 83.151469
iter 60 value 82.336908
iter 70 value 82.161846
iter 80 value 81.148328
iter 90 value 79.568251
iter 100 value 79.031048
final value 79.031048
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.569491
iter 10 value 93.822782
iter 20 value 93.527214
iter 30 value 92.142659
iter 40 value 90.574573
iter 50 value 87.407261
iter 60 value 85.086327
iter 70 value 84.556660
iter 80 value 84.382963
iter 90 value 83.062446
iter 100 value 80.894427
final value 80.894427
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 123.111293
iter 10 value 94.444208
iter 20 value 93.094898
iter 30 value 86.475827
iter 40 value 84.130171
iter 50 value 83.771021
iter 60 value 83.450858
iter 70 value 82.833778
iter 80 value 81.132381
iter 90 value 80.447068
iter 100 value 79.995228
final value 79.995228
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.737428
iter 10 value 93.985742
iter 20 value 92.858845
iter 30 value 87.459972
iter 40 value 83.814753
iter 50 value 81.436229
iter 60 value 79.368218
iter 70 value 78.887485
iter 80 value 78.631126
iter 90 value 78.412250
iter 100 value 78.296507
final value 78.296507
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.108362
iter 10 value 93.886803
iter 20 value 86.563544
iter 30 value 81.922808
iter 40 value 81.581346
iter 50 value 81.492020
iter 60 value 81.451508
iter 70 value 81.278497
iter 80 value 80.851325
iter 90 value 80.796626
iter 100 value 80.590552
final value 80.590552
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 112.308072
final value 94.054755
converged
Fitting Repeat 2
# weights: 103
initial value 94.838049
iter 10 value 94.054331
iter 20 value 94.052457
iter 30 value 86.838214
iter 40 value 82.763408
iter 50 value 82.741164
iter 60 value 81.748456
iter 70 value 80.546212
iter 80 value 80.362483
iter 90 value 80.361327
final value 80.360372
converged
Fitting Repeat 3
# weights: 103
initial value 102.079835
final value 94.054393
converged
Fitting Repeat 4
# weights: 103
initial value 99.640369
iter 10 value 93.676804
iter 20 value 93.606091
iter 30 value 93.518293
final value 93.518289
converged
Fitting Repeat 5
# weights: 103
initial value 97.871712
final value 94.054663
converged
Fitting Repeat 1
# weights: 305
initial value 97.752626
iter 10 value 94.057744
iter 20 value 94.053077
iter 30 value 93.690381
iter 40 value 91.327193
iter 50 value 90.287668
iter 60 value 88.843386
iter 70 value 85.404533
iter 80 value 81.885048
iter 90 value 79.548089
iter 100 value 79.138099
final value 79.138099
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 118.110984
iter 10 value 94.037642
iter 20 value 94.033532
iter 30 value 93.931501
iter 40 value 93.601648
final value 93.601615
converged
Fitting Repeat 3
# weights: 305
initial value 97.775866
iter 10 value 94.058283
iter 20 value 93.997198
iter 30 value 93.590861
iter 40 value 93.587790
final value 93.587788
converged
Fitting Repeat 4
# weights: 305
initial value 97.292309
iter 10 value 94.057696
iter 20 value 94.051123
iter 30 value 92.456198
iter 40 value 92.443078
iter 50 value 92.002457
iter 60 value 92.001472
final value 92.000769
converged
Fitting Repeat 5
# weights: 305
initial value 96.367149
iter 10 value 93.803969
iter 20 value 93.524222
iter 30 value 93.285679
iter 40 value 93.221939
iter 50 value 93.220179
iter 60 value 93.217415
iter 70 value 93.216499
iter 80 value 93.211554
iter 90 value 91.763568
iter 100 value 91.191622
final value 91.191622
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 95.794281
iter 10 value 92.861834
iter 20 value 92.843381
iter 30 value 92.837536
final value 92.837212
converged
Fitting Repeat 2
# weights: 507
initial value 97.698234
iter 10 value 94.040983
iter 20 value 94.034263
iter 30 value 86.548854
iter 40 value 86.543874
iter 50 value 86.535861
iter 60 value 86.524075
iter 70 value 86.498664
iter 80 value 86.429895
iter 90 value 85.974807
iter 100 value 85.442572
final value 85.442572
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.794154
iter 10 value 94.060568
iter 20 value 94.054302
iter 30 value 91.024866
iter 40 value 84.483581
iter 50 value 84.419788
iter 60 value 84.402422
iter 70 value 84.399910
iter 80 value 84.375615
iter 90 value 84.352024
iter 100 value 84.340178
final value 84.340178
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.697743
iter 10 value 94.057862
iter 20 value 93.817466
iter 30 value 93.598594
iter 40 value 87.462955
iter 50 value 85.190427
iter 60 value 85.159148
iter 70 value 84.709144
iter 80 value 82.079581
iter 90 value 81.079122
iter 100 value 80.709455
final value 80.709455
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.251266
iter 10 value 93.612882
iter 20 value 93.518729
iter 30 value 93.300327
iter 40 value 93.214221
final value 93.214219
converged
Fitting Repeat 1
# weights: 103
initial value 100.097084
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.731524
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.446171
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.669830
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 99.660420
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.156727
iter 10 value 93.924032
iter 20 value 93.908609
final value 93.907602
converged
Fitting Repeat 2
# weights: 305
initial value 96.514339
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 103.252916
final value 94.275345
converged
Fitting Repeat 4
# weights: 305
initial value 95.683529
iter 10 value 94.275763
final value 94.275345
converged
Fitting Repeat 5
# weights: 305
initial value 103.403658
iter 10 value 94.275363
iter 10 value 94.275362
iter 10 value 94.275362
final value 94.275362
converged
Fitting Repeat 1
# weights: 507
initial value 93.376126
iter 10 value 85.560183
iter 20 value 85.290310
final value 85.289851
converged
Fitting Repeat 2
# weights: 507
initial value 96.174025
iter 10 value 94.275400
final value 94.275362
converged
Fitting Repeat 3
# weights: 507
initial value 106.107701
iter 10 value 94.275363
iter 10 value 94.275362
iter 10 value 94.275362
final value 94.275362
converged
Fitting Repeat 4
# weights: 507
initial value 104.535850
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 100.807118
iter 10 value 93.993779
iter 20 value 88.360533
iter 30 value 85.093058
iter 40 value 85.074629
iter 50 value 85.074524
final value 85.074519
converged
Fitting Repeat 1
# weights: 103
initial value 99.061273
iter 10 value 94.488418
iter 20 value 92.683932
iter 30 value 92.509806
iter 40 value 85.368335
iter 50 value 84.450118
iter 60 value 84.230686
iter 70 value 84.184742
iter 80 value 83.943621
iter 90 value 83.788205
final value 83.774299
converged
Fitting Repeat 2
# weights: 103
initial value 103.727855
iter 10 value 94.489171
iter 20 value 94.146698
iter 30 value 92.982245
iter 40 value 86.424012
iter 50 value 85.965881
iter 60 value 84.107614
iter 70 value 83.792512
iter 80 value 83.790067
iter 90 value 83.048653
iter 100 value 81.893814
final value 81.893814
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.623557
iter 10 value 94.481269
iter 20 value 92.140318
iter 30 value 86.119248
iter 40 value 85.675610
iter 50 value 83.934007
iter 60 value 82.670984
iter 70 value 81.948698
iter 80 value 81.749399
iter 90 value 81.742222
final value 81.742216
converged
Fitting Repeat 4
# weights: 103
initial value 100.077104
iter 10 value 94.443274
iter 20 value 91.273281
iter 30 value 90.096863
iter 40 value 89.794713
iter 50 value 84.191311
iter 60 value 83.969993
iter 70 value 83.799096
iter 80 value 83.774341
final value 83.774298
converged
Fitting Repeat 5
# weights: 103
initial value 98.226718
iter 10 value 94.473673
iter 20 value 94.335710
iter 30 value 94.034053
iter 40 value 94.018892
iter 50 value 93.710588
iter 60 value 88.542011
iter 70 value 86.738394
iter 80 value 85.964463
iter 90 value 85.737415
iter 100 value 84.644551
final value 84.644551
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 122.104247
iter 10 value 94.591730
iter 20 value 88.982484
iter 30 value 86.049064
iter 40 value 82.274830
iter 50 value 81.549749
iter 60 value 81.108784
iter 70 value 80.643179
iter 80 value 80.404498
iter 90 value 80.306214
iter 100 value 80.208822
final value 80.208822
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 128.403232
iter 10 value 94.441720
iter 20 value 85.272176
iter 30 value 84.399283
iter 40 value 84.248788
iter 50 value 83.889868
iter 60 value 83.534490
iter 70 value 83.081361
iter 80 value 82.016113
iter 90 value 81.368611
iter 100 value 80.998069
final value 80.998069
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 109.027586
iter 10 value 94.500195
iter 20 value 87.410674
iter 30 value 85.306812
iter 40 value 83.931000
iter 50 value 83.812708
iter 60 value 83.637441
iter 70 value 83.509467
iter 80 value 83.226664
iter 90 value 81.607940
iter 100 value 80.845818
final value 80.845818
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.683400
iter 10 value 94.512982
iter 20 value 91.222075
iter 30 value 86.521356
iter 40 value 83.739356
iter 50 value 83.039972
iter 60 value 82.571295
iter 70 value 82.133415
iter 80 value 81.537182
iter 90 value 81.058780
iter 100 value 80.912069
final value 80.912069
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.793249
iter 10 value 95.055070
iter 20 value 86.096731
iter 30 value 85.600030
iter 40 value 84.029322
iter 50 value 83.484499
iter 60 value 83.463817
iter 70 value 83.200633
iter 80 value 82.664661
iter 90 value 81.153642
iter 100 value 80.933568
final value 80.933568
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.864079
iter 10 value 94.478079
iter 20 value 93.430312
iter 30 value 84.971270
iter 40 value 83.284997
iter 50 value 81.416466
iter 60 value 80.769400
iter 70 value 80.430569
iter 80 value 80.355818
iter 90 value 80.210010
iter 100 value 80.126864
final value 80.126864
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 126.595065
iter 10 value 94.691711
iter 20 value 89.962566
iter 30 value 85.945648
iter 40 value 83.892844
iter 50 value 83.531341
iter 60 value 83.468394
iter 70 value 82.182783
iter 80 value 81.168542
iter 90 value 80.722549
iter 100 value 80.624592
final value 80.624592
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.898478
iter 10 value 92.978642
iter 20 value 85.401028
iter 30 value 82.851980
iter 40 value 82.343226
iter 50 value 81.824284
iter 60 value 80.887182
iter 70 value 80.547622
iter 80 value 80.417632
iter 90 value 80.231678
iter 100 value 80.130580
final value 80.130580
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 131.406107
iter 10 value 95.049363
iter 20 value 93.487627
iter 30 value 89.634925
iter 40 value 85.527484
iter 50 value 83.670735
iter 60 value 82.130572
iter 70 value 81.084304
iter 80 value 80.789761
iter 90 value 80.748338
iter 100 value 80.669690
final value 80.669690
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.271715
iter 10 value 94.847249
iter 20 value 94.507512
iter 30 value 93.339327
iter 40 value 86.113936
iter 50 value 83.913667
iter 60 value 83.695622
iter 70 value 82.863593
iter 80 value 81.623724
iter 90 value 81.035257
iter 100 value 80.791905
final value 80.791905
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.299555
iter 10 value 94.276901
iter 20 value 94.139009
final value 91.654096
converged
Fitting Repeat 2
# weights: 103
initial value 96.266069
final value 94.485566
converged
Fitting Repeat 3
# weights: 103
initial value 95.032218
iter 10 value 94.277110
iter 20 value 94.209450
iter 30 value 82.934488
iter 40 value 82.895206
iter 50 value 82.886248
final value 82.886137
converged
Fitting Repeat 4
# weights: 103
initial value 102.393047
final value 94.486034
converged
Fitting Repeat 5
# weights: 103
initial value 98.754465
iter 10 value 94.485933
iter 20 value 94.474521
iter 30 value 93.921400
final value 93.921366
converged
Fitting Repeat 1
# weights: 305
initial value 114.380435
iter 10 value 94.489184
iter 20 value 94.450868
iter 30 value 93.949491
iter 40 value 89.976852
iter 50 value 85.278775
iter 60 value 85.268252
iter 70 value 84.787665
iter 80 value 82.014910
iter 90 value 81.030275
iter 100 value 80.300596
final value 80.300596
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.505142
iter 10 value 94.489058
iter 20 value 94.476453
iter 30 value 91.390332
final value 91.269849
converged
Fitting Repeat 3
# weights: 305
initial value 114.435065
iter 10 value 94.280829
iter 20 value 94.277038
iter 30 value 85.332652
iter 40 value 85.064464
iter 40 value 85.064464
iter 40 value 85.064464
final value 85.064464
converged
Fitting Repeat 4
# weights: 305
initial value 105.235874
iter 10 value 94.488833
iter 20 value 92.063721
iter 30 value 91.655129
iter 40 value 91.652960
iter 50 value 90.385278
iter 60 value 82.967482
iter 70 value 82.820466
iter 80 value 82.819272
iter 90 value 82.819147
final value 82.818803
converged
Fitting Repeat 5
# weights: 305
initial value 96.537968
iter 10 value 94.489175
iter 20 value 94.014848
iter 30 value 91.653857
final value 91.653434
converged
Fitting Repeat 1
# weights: 507
initial value 123.914343
iter 10 value 94.283987
iter 20 value 94.215534
iter 30 value 93.722306
iter 40 value 91.906027
iter 50 value 91.569479
iter 60 value 91.462992
iter 70 value 91.453503
iter 80 value 91.453123
iter 90 value 86.147013
iter 100 value 85.282089
final value 85.282089
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.017569
iter 10 value 93.383906
iter 20 value 93.376640
iter 30 value 93.306545
iter 40 value 90.199702
iter 50 value 82.704226
iter 60 value 82.689611
iter 70 value 82.689326
iter 80 value 82.688793
iter 90 value 82.688553
iter 100 value 82.342798
final value 82.342798
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.196504
iter 10 value 94.310013
iter 20 value 94.284666
iter 30 value 94.280089
iter 40 value 94.276867
iter 50 value 93.847967
iter 60 value 90.433318
iter 70 value 88.267212
iter 80 value 88.252181
iter 90 value 88.251596
iter 100 value 88.251077
final value 88.251077
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 97.305396
iter 10 value 94.283668
iter 20 value 93.946394
iter 30 value 89.473667
iter 40 value 89.079764
iter 50 value 87.074502
iter 60 value 86.432842
iter 70 value 86.256374
iter 80 value 86.147697
iter 90 value 86.147255
iter 100 value 86.126147
final value 86.126147
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 129.338613
iter 10 value 94.492090
iter 20 value 94.408222
iter 30 value 87.047627
final value 87.047625
converged
Fitting Repeat 1
# weights: 103
initial value 101.943190
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 94.470729
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.171683
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.534568
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 100.890759
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 97.086594
iter 10 value 94.011438
final value 94.011429
converged
Fitting Repeat 2
# weights: 305
initial value 102.800322
final value 94.052911
converged
Fitting Repeat 3
# weights: 305
initial value 111.182435
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 94.187296
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 105.208387
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 109.122379
iter 10 value 93.791151
final value 93.790891
converged
Fitting Repeat 2
# weights: 507
initial value 131.858854
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 96.324855
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 105.812346
iter 10 value 93.770696
final value 93.734703
converged
Fitting Repeat 5
# weights: 507
initial value 113.315458
final value 93.836066
converged
Fitting Repeat 1
# weights: 103
initial value 101.878017
iter 10 value 94.052639
iter 20 value 93.499868
iter 30 value 92.502147
iter 40 value 92.244482
iter 50 value 92.169909
iter 60 value 86.483621
iter 70 value 85.479630
iter 80 value 85.217117
iter 90 value 85.093044
final value 85.092660
converged
Fitting Repeat 2
# weights: 103
initial value 100.546125
iter 10 value 94.036941
iter 20 value 91.438455
iter 30 value 87.140960
iter 40 value 85.184789
iter 50 value 84.794346
iter 60 value 84.703290
iter 70 value 84.679224
iter 80 value 84.676198
final value 84.676195
converged
Fitting Repeat 3
# weights: 103
initial value 98.902602
iter 10 value 93.888686
iter 20 value 92.496318
iter 30 value 88.165107
iter 40 value 86.959711
iter 50 value 85.790582
iter 60 value 85.234256
iter 70 value 83.795501
iter 80 value 83.551274
iter 90 value 83.494223
iter 100 value 83.430631
final value 83.430631
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.433097
iter 10 value 94.054951
iter 20 value 93.963717
iter 30 value 92.006235
iter 40 value 87.256085
iter 50 value 85.910491
iter 60 value 85.211655
iter 70 value 85.132288
iter 80 value 84.830105
iter 90 value 84.684617
final value 84.676195
converged
Fitting Repeat 5
# weights: 103
initial value 107.503037
iter 10 value 94.055054
iter 20 value 92.303675
iter 30 value 87.040942
iter 40 value 85.690419
iter 50 value 84.823763
iter 60 value 84.696112
iter 70 value 84.681799
iter 80 value 84.677004
iter 90 value 84.676199
final value 84.676195
converged
Fitting Repeat 1
# weights: 305
initial value 128.825376
iter 10 value 94.022752
iter 20 value 87.370691
iter 30 value 86.440190
iter 40 value 85.137119
iter 50 value 83.953269
iter 60 value 82.679208
iter 70 value 82.445307
iter 80 value 82.361712
iter 90 value 82.315320
iter 100 value 82.301328
final value 82.301328
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 113.799124
iter 10 value 93.943363
iter 20 value 86.177363
iter 30 value 85.867620
iter 40 value 85.698876
iter 50 value 84.216843
iter 60 value 83.654782
iter 70 value 83.370782
iter 80 value 83.171448
iter 90 value 83.037747
iter 100 value 82.559357
final value 82.559357
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.071796
iter 10 value 94.432679
iter 20 value 94.103293
iter 30 value 91.176154
iter 40 value 90.142608
iter 50 value 87.982495
iter 60 value 86.255727
iter 70 value 85.255690
iter 80 value 84.915794
iter 90 value 84.787127
iter 100 value 84.573511
final value 84.573511
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.450796
iter 10 value 93.914660
iter 20 value 89.167710
iter 30 value 87.476623
iter 40 value 85.168424
iter 50 value 84.413675
iter 60 value 83.649114
iter 70 value 83.127090
iter 80 value 82.800670
iter 90 value 82.568584
iter 100 value 82.553830
final value 82.553830
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.175177
iter 10 value 93.654823
iter 20 value 91.058599
iter 30 value 87.729463
iter 40 value 87.301140
iter 50 value 86.031094
iter 60 value 85.781227
iter 70 value 84.758312
iter 80 value 83.024793
iter 90 value 82.843743
iter 100 value 82.787879
final value 82.787879
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 124.822418
iter 10 value 94.207581
iter 20 value 93.910950
iter 30 value 93.845145
iter 40 value 89.587438
iter 50 value 87.457608
iter 60 value 85.735853
iter 70 value 84.771914
iter 80 value 84.432897
iter 90 value 83.970359
iter 100 value 83.247121
final value 83.247121
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 137.462651
iter 10 value 94.312074
iter 20 value 93.583918
iter 30 value 92.125962
iter 40 value 90.871921
iter 50 value 90.621509
iter 60 value 88.366476
iter 70 value 85.711295
iter 80 value 84.993186
iter 90 value 84.120641
iter 100 value 83.810825
final value 83.810825
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.897300
iter 10 value 96.543600
iter 20 value 94.077642
iter 30 value 93.305582
iter 40 value 85.494440
iter 50 value 84.265623
iter 60 value 83.656033
iter 70 value 82.977389
iter 80 value 82.532256
iter 90 value 82.333533
iter 100 value 81.948085
final value 81.948085
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.473103
iter 10 value 91.888778
iter 20 value 86.289451
iter 30 value 85.755812
iter 40 value 84.175083
iter 50 value 83.102567
iter 60 value 82.854595
iter 70 value 82.704583
iter 80 value 82.669055
iter 90 value 82.648581
iter 100 value 82.625506
final value 82.625506
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 127.134961
iter 10 value 95.161939
iter 20 value 93.056420
iter 30 value 92.839158
iter 40 value 92.644151
iter 50 value 87.306792
iter 60 value 84.409633
iter 70 value 83.661247
iter 80 value 82.865332
iter 90 value 82.175998
iter 100 value 82.042474
final value 82.042474
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.880041
final value 94.054760
converged
Fitting Repeat 2
# weights: 103
initial value 103.208842
final value 94.055142
converged
Fitting Repeat 3
# weights: 103
initial value 99.057642
iter 10 value 94.054560
iter 20 value 94.019276
iter 30 value 86.471137
final value 86.469585
converged
Fitting Repeat 4
# weights: 103
initial value 100.534973
final value 94.054535
converged
Fitting Repeat 5
# weights: 103
initial value 101.767800
final value 94.054551
converged
Fitting Repeat 1
# weights: 305
initial value 103.058736
iter 10 value 93.704516
iter 20 value 93.702128
iter 30 value 93.694694
iter 40 value 91.950977
iter 50 value 87.003908
iter 60 value 84.820186
iter 70 value 84.413888
iter 80 value 84.303165
iter 90 value 84.302681
final value 84.302385
converged
Fitting Repeat 2
# weights: 305
initial value 98.987117
iter 10 value 93.814894
iter 20 value 93.791334
iter 30 value 93.787741
iter 40 value 93.741683
iter 50 value 89.902834
iter 60 value 85.775495
final value 85.750161
converged
Fitting Repeat 3
# weights: 305
initial value 97.137907
iter 10 value 94.057902
iter 20 value 94.052772
iter 30 value 86.505809
iter 40 value 85.449650
iter 50 value 85.436145
iter 60 value 85.435939
iter 60 value 85.435938
final value 85.435938
converged
Fitting Repeat 4
# weights: 305
initial value 95.789014
iter 10 value 94.016533
iter 20 value 93.815353
iter 30 value 93.765041
final value 93.728929
converged
Fitting Repeat 5
# weights: 305
initial value 96.928928
iter 10 value 93.841062
iter 20 value 93.839585
iter 30 value 93.752285
iter 40 value 92.145177
iter 50 value 86.997777
iter 60 value 84.604297
iter 70 value 84.579002
iter 80 value 84.555564
iter 90 value 84.351198
iter 100 value 81.589483
final value 81.589483
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 121.197666
iter 10 value 93.844308
iter 20 value 93.791552
final value 93.786568
converged
Fitting Repeat 2
# weights: 507
initial value 104.940543
iter 10 value 86.936212
iter 20 value 86.806836
iter 30 value 86.799621
iter 40 value 86.733623
final value 86.731182
converged
Fitting Repeat 3
# weights: 507
initial value 107.275903
iter 10 value 93.946721
iter 20 value 87.681170
iter 30 value 87.573209
iter 40 value 87.506544
final value 87.504947
converged
Fitting Repeat 4
# weights: 507
initial value 108.928926
iter 10 value 93.844638
iter 20 value 93.837229
iter 30 value 93.771847
iter 40 value 89.813608
iter 50 value 86.842271
iter 60 value 86.836250
iter 70 value 86.836145
iter 80 value 85.998459
iter 90 value 84.427237
iter 100 value 83.438130
final value 83.438130
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 95.805560
iter 10 value 93.844361
iter 20 value 93.600134
iter 30 value 88.384649
iter 40 value 84.863064
iter 50 value 84.780250
final value 84.780033
converged
Fitting Repeat 1
# weights: 103
initial value 122.218602
iter 10 value 117.635160
iter 20 value 117.604194
iter 30 value 110.046940
iter 40 value 107.305496
iter 50 value 107.061511
iter 60 value 104.801766
iter 70 value 102.933539
iter 80 value 102.369598
iter 90 value 102.100011
final value 102.094538
converged
Fitting Repeat 2
# weights: 103
initial value 121.087332
iter 10 value 117.534034
iter 20 value 110.303014
iter 30 value 109.670790
iter 40 value 107.721600
iter 50 value 107.458286
iter 60 value 106.231398
iter 70 value 105.850038
iter 80 value 105.646535
iter 90 value 105.262609
iter 100 value 105.258656
final value 105.258656
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 120.481147
iter 10 value 117.831046
iter 20 value 117.242088
iter 30 value 109.193552
iter 40 value 107.032534
iter 50 value 105.291369
iter 60 value 103.559951
iter 70 value 103.539018
final value 103.538053
converged
Fitting Repeat 4
# weights: 103
initial value 123.910030
iter 10 value 117.892722
iter 20 value 117.635048
iter 30 value 115.557632
iter 40 value 113.341626
iter 50 value 109.788099
iter 60 value 106.925749
iter 70 value 106.272778
iter 80 value 105.643076
iter 90 value 105.566340
iter 90 value 105.566339
iter 90 value 105.566339
final value 105.566339
converged
Fitting Repeat 5
# weights: 103
initial value 125.755205
iter 10 value 117.894182
iter 20 value 117.803508
iter 30 value 116.872017
iter 40 value 110.343700
iter 50 value 104.817024
iter 60 value 103.905588
iter 70 value 103.481011
iter 80 value 103.229133
iter 90 value 102.849596
iter 100 value 102.692735
final value 102.692735
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Sun Apr 12 20:15:38 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
19.427 0.683 78.044
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 17.189 | 0.098 | 17.855 | |
| FreqInteractors | 0.155 | 0.007 | 0.162 | |
| calculateAAC | 0.012 | 0.001 | 0.013 | |
| calculateAutocor | 0.121 | 0.007 | 0.128 | |
| calculateCTDC | 0.027 | 0.001 | 0.028 | |
| calculateCTDD | 0.164 | 0.018 | 0.183 | |
| calculateCTDT | 0.056 | 0.002 | 0.058 | |
| calculateCTriad | 0.152 | 0.006 | 0.158 | |
| calculateDC | 0.035 | 0.002 | 0.038 | |
| calculateF | 0.097 | 0.001 | 0.099 | |
| calculateKSAAP | 0.033 | 0.002 | 0.036 | |
| calculateQD_Sm | 0.700 | 0.033 | 0.734 | |
| calculateTC | 0.570 | 0.050 | 0.628 | |
| calculateTC_Sm | 0.102 | 0.003 | 0.107 | |
| corr_plot | 17.151 | 0.123 | 17.345 | |
| enrichfindP | 0.200 | 0.040 | 8.987 | |
| enrichfind_hp | 0.015 | 0.002 | 1.844 | |
| enrichplot | 0.167 | 0.002 | 0.171 | |
| filter_missing_values | 0 | 0 | 0 | |
| getFASTA | 0.031 | 0.007 | 3.372 | |
| getHPI | 0 | 0 | 0 | |
| get_negativePPI | 0.001 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0 | 0 | 0 | |
| plotPPI | 0.032 | 0.002 | 0.034 | |
| pred_ensembel | 6.324 | 0.197 | 5.766 | |
| var_imp | 17.177 | 0.152 | 17.450 | |