| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-26 11:36 -0400 (Tue, 26 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4938 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4640 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1017/2379 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.19.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | ||||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.19.0.tar.gz |
| StartedAt: 2026-05-25 19:58:01 -0400 (Mon, 25 May 2026) |
| EndedAt: 2026-05-25 20:01:06 -0400 (Mon, 25 May 2026) |
| EllapsedTime: 185.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 Patched (2026-05-01 r89994)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-25 23:58:01 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 16.935 0.085 17.060
var_imp 16.849 0.088 16.950
FSmethod 16.816 0.061 17.090
pred_ensembel 6.050 0.142 5.469
enrichfindP 0.199 0.034 8.509
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.19.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 98.860099
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.622261
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.872274
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.529148
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.383619
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 103.848714
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 99.526201
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 103.116656
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 113.099794
final value 94.473118
converged
Fitting Repeat 5
# weights: 305
initial value 102.098092
final value 94.473118
converged
Fitting Repeat 1
# weights: 507
initial value 107.557299
iter 10 value 91.183048
iter 20 value 83.961804
iter 30 value 79.129510
iter 40 value 77.917928
iter 50 value 77.171028
final value 77.171017
converged
Fitting Repeat 2
# weights: 507
initial value 109.066291
iter 10 value 94.479198
final value 94.473118
converged
Fitting Repeat 3
# weights: 507
initial value 108.680104
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 116.767224
iter 10 value 94.266710
iter 20 value 87.826183
iter 30 value 86.922650
iter 40 value 85.095636
iter 50 value 83.864579
final value 83.864577
converged
Fitting Repeat 5
# weights: 507
initial value 146.597918
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 96.877982
iter 10 value 94.037388
iter 20 value 90.284139
iter 30 value 89.562721
iter 40 value 89.541872
final value 89.541867
converged
Fitting Repeat 2
# weights: 103
initial value 103.189587
iter 10 value 94.267690
iter 20 value 87.307367
iter 30 value 82.945381
iter 40 value 81.846519
iter 50 value 81.468415
iter 60 value 79.684428
iter 70 value 78.855804
iter 80 value 78.475349
iter 90 value 78.230997
iter 100 value 78.203195
final value 78.203195
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.952057
iter 10 value 94.488555
iter 20 value 93.984346
iter 30 value 93.841753
iter 40 value 93.821868
iter 50 value 83.039931
iter 60 value 82.103316
iter 70 value 81.813228
iter 80 value 81.403245
iter 90 value 81.389394
final value 81.389380
converged
Fitting Repeat 4
# weights: 103
initial value 107.701941
iter 10 value 94.489190
iter 20 value 94.047069
iter 30 value 93.862616
iter 40 value 93.517007
iter 50 value 93.505802
iter 60 value 93.171810
iter 70 value 87.495174
iter 80 value 80.764687
iter 90 value 79.436950
iter 100 value 78.646374
final value 78.646374
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 104.202894
iter 10 value 94.488545
iter 20 value 94.154621
iter 30 value 93.907351
iter 40 value 90.731483
iter 50 value 81.475388
iter 60 value 80.515983
iter 70 value 80.218228
iter 80 value 78.583576
iter 90 value 78.245763
iter 100 value 77.998424
final value 77.998424
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 108.789454
iter 10 value 93.147096
iter 20 value 85.481228
iter 30 value 84.506972
iter 40 value 80.693867
iter 50 value 79.697175
iter 60 value 79.212671
iter 70 value 78.871481
iter 80 value 78.359280
iter 90 value 78.235285
iter 100 value 78.033668
final value 78.033668
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.059047
iter 10 value 94.588710
iter 20 value 94.101107
iter 30 value 93.652126
iter 40 value 86.204085
iter 50 value 85.673027
iter 60 value 84.838568
iter 70 value 82.266782
iter 80 value 78.181241
iter 90 value 77.690429
iter 100 value 77.523059
final value 77.523059
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.343344
iter 10 value 94.383292
iter 20 value 92.775734
iter 30 value 92.272513
iter 40 value 90.712770
iter 50 value 81.109546
iter 60 value 79.154741
iter 70 value 78.718542
iter 80 value 78.459417
iter 90 value 78.145585
iter 100 value 77.951942
final value 77.951942
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.641860
iter 10 value 94.416882
iter 20 value 94.053962
iter 30 value 91.759048
iter 40 value 82.657551
iter 50 value 81.659582
iter 60 value 80.785398
iter 70 value 78.459153
iter 80 value 77.872608
iter 90 value 77.752504
iter 100 value 77.683830
final value 77.683830
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.541322
iter 10 value 94.505014
iter 20 value 94.313929
iter 30 value 84.177046
iter 40 value 80.549891
iter 50 value 79.955513
iter 60 value 77.874335
iter 70 value 76.365995
iter 80 value 76.180759
iter 90 value 76.115757
iter 100 value 76.073138
final value 76.073138
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 124.842253
iter 10 value 93.505019
iter 20 value 83.792829
iter 30 value 82.552125
iter 40 value 81.111828
iter 50 value 77.433877
iter 60 value 76.779889
iter 70 value 76.323166
iter 80 value 76.248055
iter 90 value 76.064488
iter 100 value 75.940895
final value 75.940895
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.604129
iter 10 value 95.007113
iter 20 value 94.500937
iter 30 value 87.902168
iter 40 value 86.670456
iter 50 value 84.685701
iter 60 value 80.414551
iter 70 value 78.081064
iter 80 value 77.115143
iter 90 value 76.918433
iter 100 value 76.812321
final value 76.812321
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 117.034919
iter 10 value 94.916363
iter 20 value 86.265349
iter 30 value 82.050185
iter 40 value 81.884913
iter 50 value 81.748904
iter 60 value 79.380895
iter 70 value 78.524220
iter 80 value 78.026888
iter 90 value 77.843573
iter 100 value 77.393091
final value 77.393091
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.330862
iter 10 value 94.468984
iter 20 value 92.983573
iter 30 value 91.321754
iter 40 value 85.540125
iter 50 value 83.435846
iter 60 value 81.649880
iter 70 value 81.033643
iter 80 value 80.166686
iter 90 value 79.781473
iter 100 value 79.370757
final value 79.370757
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.087339
iter 10 value 94.656905
iter 20 value 94.479019
iter 30 value 88.056873
iter 40 value 87.379116
iter 50 value 86.768488
iter 60 value 84.181841
iter 70 value 79.359197
iter 80 value 78.571126
iter 90 value 78.493489
iter 100 value 78.354352
final value 78.354352
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.360400
final value 94.486157
converged
Fitting Repeat 2
# weights: 103
initial value 95.740099
final value 94.145963
converged
Fitting Repeat 3
# weights: 103
initial value 101.077870
iter 10 value 94.485900
iter 20 value 94.483963
iter 30 value 93.309401
iter 40 value 87.268138
iter 50 value 82.425902
iter 60 value 82.362344
iter 70 value 82.314653
iter 80 value 82.313605
iter 90 value 81.030350
iter 100 value 80.348386
final value 80.348386
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 100.055944
iter 10 value 94.485933
iter 20 value 94.480756
iter 30 value 94.075917
final value 94.057507
converged
Fitting Repeat 5
# weights: 103
initial value 99.674545
final value 94.486321
converged
Fitting Repeat 1
# weights: 305
initial value 96.494902
iter 10 value 94.488686
iter 20 value 94.484406
final value 94.484368
converged
Fitting Repeat 2
# weights: 305
initial value 101.320591
iter 10 value 94.055837
iter 20 value 94.040994
iter 30 value 94.038243
iter 40 value 94.036758
iter 50 value 94.032106
final value 94.031501
converged
Fitting Repeat 3
# weights: 305
initial value 99.958582
iter 10 value 94.489126
iter 20 value 94.484632
iter 30 value 82.851711
iter 40 value 81.441542
iter 50 value 81.435080
iter 60 value 81.433375
iter 70 value 81.433319
final value 81.433229
converged
Fitting Repeat 4
# weights: 305
initial value 107.733001
iter 10 value 94.489065
iter 20 value 94.484228
iter 30 value 92.680012
iter 40 value 87.046323
iter 50 value 87.036189
iter 60 value 86.640859
iter 70 value 86.563771
iter 80 value 85.760159
iter 90 value 85.755478
iter 100 value 85.570293
final value 85.570293
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.687231
iter 10 value 94.478141
iter 20 value 94.473527
iter 30 value 93.644311
iter 40 value 86.701516
final value 86.699216
converged
Fitting Repeat 1
# weights: 507
initial value 103.064111
iter 10 value 94.146311
iter 20 value 94.142020
iter 30 value 94.138836
final value 94.138507
converged
Fitting Repeat 2
# weights: 507
initial value 95.318162
iter 10 value 94.491252
iter 20 value 94.433412
iter 30 value 87.738686
iter 40 value 85.380731
iter 50 value 83.493231
iter 60 value 83.488593
iter 70 value 82.832411
iter 80 value 82.827674
iter 90 value 81.726552
iter 100 value 80.501926
final value 80.501926
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 95.651318
iter 10 value 94.491583
iter 20 value 94.414099
iter 30 value 82.005811
iter 40 value 81.520568
iter 50 value 81.500531
iter 60 value 80.401251
iter 70 value 80.365999
iter 80 value 79.679979
iter 90 value 77.673095
iter 100 value 77.507868
final value 77.507868
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 97.290298
iter 10 value 94.481619
iter 20 value 94.477699
iter 30 value 94.453516
iter 40 value 92.929908
iter 50 value 90.158001
iter 60 value 89.688468
iter 70 value 84.806808
iter 80 value 78.707628
iter 90 value 77.059425
iter 100 value 77.056869
final value 77.056869
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.273262
iter 10 value 94.489738
iter 20 value 87.893121
iter 30 value 84.313575
final value 84.313291
converged
Fitting Repeat 1
# weights: 103
initial value 96.161033
final value 94.011429
converged
Fitting Repeat 2
# weights: 103
initial value 100.885524
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 99.484680
final value 93.836066
converged
Fitting Repeat 4
# weights: 103
initial value 97.969139
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 97.685295
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 95.737123
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 116.930051
final value 93.836066
converged
Fitting Repeat 3
# weights: 305
initial value 96.858447
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 101.680349
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 103.970452
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 99.789109
iter 10 value 92.642428
final value 92.211111
converged
Fitting Repeat 2
# weights: 507
initial value 99.364461
iter 10 value 93.826302
iter 20 value 93.818736
final value 93.818714
converged
Fitting Repeat 3
# weights: 507
initial value 106.399760
iter 10 value 93.836069
final value 93.836066
converged
Fitting Repeat 4
# weights: 507
initial value 108.595245
final value 93.836065
converged
Fitting Repeat 5
# weights: 507
initial value 107.296981
final value 93.836066
converged
Fitting Repeat 1
# weights: 103
initial value 108.380302
iter 10 value 94.072964
iter 20 value 92.282421
iter 30 value 90.887691
iter 40 value 86.689399
iter 50 value 84.990487
iter 60 value 83.386382
iter 70 value 83.146182
iter 80 value 83.081975
iter 90 value 83.064488
iter 100 value 83.036283
final value 83.036283
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.833592
iter 10 value 94.047649
iter 20 value 93.901168
iter 30 value 93.894244
iter 40 value 93.889829
iter 50 value 90.337516
iter 60 value 88.429604
iter 70 value 88.103043
iter 80 value 82.718916
iter 90 value 81.600803
iter 100 value 81.479170
final value 81.479170
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.351221
iter 10 value 93.970165
iter 20 value 93.727967
iter 30 value 93.662710
iter 40 value 91.088463
iter 50 value 84.145212
iter 60 value 83.202696
iter 70 value 82.785162
iter 80 value 82.668282
iter 90 value 81.887051
iter 100 value 81.204233
final value 81.204233
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.181988
iter 10 value 94.056715
iter 20 value 93.670092
iter 30 value 93.508192
iter 40 value 86.970543
iter 50 value 86.544199
iter 60 value 83.833613
iter 70 value 83.117509
iter 80 value 83.070540
iter 90 value 83.061723
iter 100 value 83.036291
final value 83.036291
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 108.398275
iter 10 value 94.162981
iter 20 value 94.056694
iter 30 value 85.858802
iter 40 value 84.513135
iter 50 value 84.384200
iter 60 value 84.308217
final value 84.307393
converged
Fitting Repeat 1
# weights: 305
initial value 120.156603
iter 10 value 94.038106
iter 20 value 92.598478
iter 30 value 88.794309
iter 40 value 85.484586
iter 50 value 82.210314
iter 60 value 81.934664
iter 70 value 81.140352
iter 80 value 80.790223
iter 90 value 80.333271
iter 100 value 80.099116
final value 80.099116
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 113.069374
iter 10 value 92.395281
iter 20 value 84.725401
iter 30 value 83.433886
iter 40 value 83.363636
iter 50 value 83.038457
iter 60 value 82.916330
iter 70 value 82.759492
iter 80 value 82.703834
iter 90 value 82.370593
iter 100 value 80.779459
final value 80.779459
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 113.769819
iter 10 value 93.901192
iter 20 value 89.384427
iter 30 value 86.590473
iter 40 value 84.074422
iter 50 value 83.205347
iter 60 value 82.874629
iter 70 value 82.828375
iter 80 value 82.723700
iter 90 value 82.422763
iter 100 value 81.499863
final value 81.499863
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 126.668114
iter 10 value 94.549677
iter 20 value 94.062656
iter 30 value 93.849924
iter 40 value 93.755767
iter 50 value 91.947474
iter 60 value 89.835641
iter 70 value 84.644544
iter 80 value 83.285177
iter 90 value 83.213560
iter 100 value 82.799459
final value 82.799459
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 128.091219
iter 10 value 94.005941
iter 20 value 92.808492
iter 30 value 86.808027
iter 40 value 84.549817
iter 50 value 82.747611
iter 60 value 81.559939
iter 70 value 80.377937
iter 80 value 80.044081
iter 90 value 79.941162
iter 100 value 79.885429
final value 79.885429
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.919367
iter 10 value 93.784295
iter 20 value 86.465922
iter 30 value 83.141792
iter 40 value 81.213758
iter 50 value 80.801092
iter 60 value 80.746106
iter 70 value 80.592849
iter 80 value 80.117331
iter 90 value 79.800310
iter 100 value 79.782689
final value 79.782689
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.522674
iter 10 value 94.135845
iter 20 value 86.522159
iter 30 value 85.147701
iter 40 value 82.944224
iter 50 value 81.543083
iter 60 value 80.746957
iter 70 value 80.368586
iter 80 value 80.135847
iter 90 value 80.044391
iter 100 value 79.861614
final value 79.861614
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.945510
iter 10 value 93.887896
iter 20 value 88.215248
iter 30 value 86.250224
iter 40 value 81.309959
iter 50 value 80.536791
iter 60 value 80.371239
iter 70 value 80.326478
iter 80 value 80.287897
iter 90 value 80.251149
iter 100 value 79.954901
final value 79.954901
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 120.074281
iter 10 value 94.054683
iter 20 value 92.278129
iter 30 value 85.474430
iter 40 value 84.270903
iter 50 value 82.999466
iter 60 value 82.732847
iter 70 value 82.308532
iter 80 value 82.186207
iter 90 value 82.135100
iter 100 value 81.929443
final value 81.929443
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.733764
iter 10 value 94.185553
iter 20 value 93.050083
iter 30 value 89.691629
iter 40 value 86.854063
iter 50 value 85.058521
iter 60 value 84.162946
iter 70 value 83.497239
iter 80 value 81.158564
iter 90 value 80.585525
iter 100 value 80.372472
final value 80.372472
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.614463
final value 94.054855
converged
Fitting Repeat 2
# weights: 103
initial value 94.550956
final value 94.054543
converged
Fitting Repeat 3
# weights: 103
initial value 97.501995
final value 94.054406
converged
Fitting Repeat 4
# weights: 103
initial value 95.035059
final value 94.054628
converged
Fitting Repeat 5
# weights: 103
initial value 94.179334
final value 94.054652
converged
Fitting Repeat 1
# weights: 305
initial value 99.352769
iter 10 value 93.415584
iter 20 value 93.413528
iter 30 value 93.409164
iter 40 value 87.668006
iter 50 value 85.137977
iter 60 value 81.243595
iter 70 value 81.223804
iter 80 value 81.144427
iter 90 value 81.086642
iter 100 value 81.038893
final value 81.038893
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.329972
iter 10 value 94.057320
iter 20 value 93.889724
iter 30 value 93.521518
iter 40 value 87.664362
iter 50 value 87.235847
iter 60 value 85.185278
iter 70 value 83.946898
iter 80 value 83.935663
iter 90 value 83.860060
iter 100 value 83.721180
final value 83.721180
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.323768
iter 10 value 93.843743
iter 20 value 88.465990
iter 30 value 84.129255
iter 40 value 84.102679
iter 50 value 84.093076
iter 60 value 83.502750
final value 83.493291
converged
Fitting Repeat 4
# weights: 305
initial value 97.762676
iter 10 value 93.840288
iter 20 value 93.787371
iter 30 value 93.544555
iter 40 value 93.542974
iter 40 value 93.542974
iter 50 value 93.411636
final value 93.411621
converged
Fitting Repeat 5
# weights: 305
initial value 95.322642
iter 10 value 93.246869
iter 20 value 93.102625
iter 30 value 93.018246
final value 93.017667
converged
Fitting Repeat 1
# weights: 507
initial value 104.771837
iter 10 value 93.844784
iter 20 value 93.841546
iter 30 value 93.762623
iter 40 value 85.254362
iter 50 value 81.753059
iter 60 value 81.304351
iter 70 value 81.303689
iter 80 value 81.303158
iter 90 value 81.300528
iter 100 value 81.296729
final value 81.296729
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.057074
iter 10 value 93.844285
iter 20 value 93.837379
final value 93.836825
converged
Fitting Repeat 3
# weights: 507
initial value 121.128281
iter 10 value 94.061439
iter 20 value 94.052843
iter 30 value 91.249964
iter 40 value 86.879104
iter 50 value 86.057065
iter 60 value 84.256175
iter 70 value 84.251559
final value 84.249423
converged
Fitting Repeat 4
# weights: 507
initial value 102.686023
iter 10 value 94.061501
iter 20 value 94.007144
iter 30 value 93.858398
iter 40 value 93.141044
iter 50 value 85.832412
final value 85.732941
converged
Fitting Repeat 5
# weights: 507
initial value 97.624071
iter 10 value 93.223775
iter 20 value 87.752770
iter 30 value 85.045298
iter 40 value 84.743461
iter 50 value 84.222995
iter 60 value 84.220167
iter 70 value 83.801340
iter 80 value 82.297817
iter 90 value 82.224019
iter 100 value 82.130775
final value 82.130775
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.716304
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.856856
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.341809
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.503313
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 98.062962
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.205441
iter 10 value 93.109984
final value 93.109890
converged
Fitting Repeat 2
# weights: 305
initial value 99.775660
final value 94.436782
converged
Fitting Repeat 3
# weights: 305
initial value 127.972693
iter 10 value 94.275363
iter 10 value 94.275362
iter 10 value 94.275362
final value 94.275362
converged
Fitting Repeat 4
# weights: 305
initial value 97.108780
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 109.079634
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 104.189642
final value 94.275362
converged
Fitting Repeat 2
# weights: 507
initial value 95.291078
final value 94.275362
converged
Fitting Repeat 3
# weights: 507
initial value 113.117914
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 106.487936
iter 10 value 94.275371
final value 94.275362
converged
Fitting Repeat 5
# weights: 507
initial value 108.829499
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.945311
iter 10 value 94.478612
iter 20 value 88.156665
iter 30 value 85.885143
iter 40 value 85.847738
iter 50 value 85.628435
iter 60 value 85.356652
iter 70 value 84.105794
iter 80 value 83.888847
iter 90 value 83.852541
iter 100 value 83.772182
final value 83.772182
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 117.407977
iter 10 value 94.239500
iter 20 value 93.987773
iter 30 value 93.057088
iter 40 value 92.999297
iter 50 value 89.147357
iter 60 value 86.446058
iter 70 value 85.119974
iter 80 value 84.910933
iter 90 value 84.160087
iter 100 value 83.796196
final value 83.796196
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.999351
iter 10 value 94.408700
iter 20 value 86.350930
iter 30 value 85.822989
iter 40 value 85.330268
iter 50 value 84.332579
iter 60 value 83.230282
iter 70 value 83.220738
final value 83.220712
converged
Fitting Repeat 4
# weights: 103
initial value 116.445327
iter 10 value 91.190830
iter 20 value 86.983416
iter 30 value 85.398221
iter 40 value 83.680092
iter 50 value 83.447117
iter 60 value 83.421826
final value 83.421758
converged
Fitting Repeat 5
# weights: 103
initial value 99.193275
iter 10 value 94.481938
iter 20 value 94.152979
iter 30 value 94.113876
iter 40 value 88.627051
iter 50 value 83.158112
iter 60 value 82.026266
iter 70 value 81.996007
iter 80 value 81.801635
iter 90 value 81.638266
iter 100 value 81.544593
final value 81.544593
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 100.306732
iter 10 value 94.598171
iter 20 value 94.372237
iter 30 value 93.067561
iter 40 value 92.686871
iter 50 value 89.172773
iter 60 value 85.499913
iter 70 value 80.995786
iter 80 value 80.758650
iter 90 value 80.219198
iter 100 value 80.008515
final value 80.008515
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.446277
iter 10 value 95.099737
iter 20 value 85.205817
iter 30 value 84.108176
iter 40 value 83.378967
iter 50 value 81.713517
iter 60 value 80.938558
iter 70 value 80.769076
iter 80 value 80.609423
iter 90 value 80.543473
iter 100 value 80.158025
final value 80.158025
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.759681
iter 10 value 95.634997
iter 20 value 91.487991
iter 30 value 86.313662
iter 40 value 83.625185
iter 50 value 81.981592
iter 60 value 81.512723
iter 70 value 81.396585
iter 80 value 81.236120
iter 90 value 81.180278
iter 100 value 80.786135
final value 80.786135
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 118.039575
iter 10 value 93.002547
iter 20 value 86.211171
iter 30 value 83.876284
iter 40 value 82.820559
iter 50 value 81.790686
iter 60 value 80.113432
iter 70 value 79.671056
iter 80 value 79.649414
iter 90 value 79.643406
iter 100 value 79.639510
final value 79.639510
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.394079
iter 10 value 84.769870
iter 20 value 83.807857
iter 30 value 83.605365
iter 40 value 83.389754
iter 50 value 82.313868
iter 60 value 81.207667
iter 70 value 80.491276
iter 80 value 80.286449
iter 90 value 80.010529
iter 100 value 79.869014
final value 79.869014
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 130.577677
iter 10 value 95.660571
iter 20 value 94.533824
iter 30 value 91.902325
iter 40 value 85.740141
iter 50 value 85.414737
iter 60 value 84.780914
iter 70 value 83.485274
iter 80 value 82.299841
iter 90 value 81.556605
iter 100 value 81.228472
final value 81.228472
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 110.840631
iter 10 value 94.422819
iter 20 value 93.281684
iter 30 value 84.373513
iter 40 value 83.238540
iter 50 value 82.749846
iter 60 value 81.058048
iter 70 value 80.260004
iter 80 value 79.934194
iter 90 value 79.884548
iter 100 value 79.703602
final value 79.703602
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 117.140330
iter 10 value 96.842639
iter 20 value 91.323566
iter 30 value 87.741381
iter 40 value 87.045967
iter 50 value 86.282644
iter 60 value 84.767085
iter 70 value 83.921526
iter 80 value 82.241312
iter 90 value 81.898858
iter 100 value 80.799968
final value 80.799968
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.236991
iter 10 value 94.546416
iter 20 value 93.415449
iter 30 value 93.074144
iter 40 value 88.554371
iter 50 value 85.966904
iter 60 value 83.332516
iter 70 value 81.146477
iter 80 value 80.480435
iter 90 value 80.201655
iter 100 value 79.879251
final value 79.879251
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.258674
iter 10 value 96.076456
iter 20 value 87.234296
iter 30 value 86.665280
iter 40 value 84.963388
iter 50 value 83.542927
iter 60 value 82.289031
iter 70 value 81.995403
iter 80 value 81.595515
iter 90 value 81.547171
iter 100 value 81.544164
final value 81.544164
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.603508
iter 10 value 94.485711
iter 20 value 94.484221
iter 20 value 94.484221
iter 20 value 94.484221
final value 94.484221
converged
Fitting Repeat 2
# weights: 103
initial value 101.264357
iter 10 value 94.485867
iter 20 value 94.484246
iter 30 value 89.469411
iter 40 value 82.856857
iter 50 value 82.823443
iter 60 value 82.823235
final value 82.822941
converged
Fitting Repeat 3
# weights: 103
initial value 98.284831
final value 94.485868
converged
Fitting Repeat 4
# weights: 103
initial value 94.970597
iter 10 value 94.276892
iter 20 value 94.275496
final value 94.275429
converged
Fitting Repeat 5
# weights: 103
initial value 96.807237
iter 10 value 94.485918
final value 94.484214
converged
Fitting Repeat 1
# weights: 305
initial value 102.715392
iter 10 value 94.281351
iter 20 value 94.278546
iter 30 value 94.277401
iter 40 value 94.194752
iter 50 value 87.433461
iter 60 value 86.953552
iter 70 value 86.294495
iter 80 value 85.986784
iter 90 value 85.755057
final value 85.742634
converged
Fitting Repeat 2
# weights: 305
initial value 96.444583
iter 10 value 94.488604
iter 20 value 94.388226
iter 30 value 86.087686
iter 40 value 85.388479
iter 50 value 85.370701
iter 60 value 85.370259
iter 70 value 83.001137
iter 80 value 81.233913
iter 90 value 80.694723
iter 100 value 80.193275
final value 80.193275
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.237145
iter 10 value 94.280654
iter 20 value 91.053109
iter 30 value 90.693776
iter 40 value 90.691324
iter 50 value 89.502891
iter 60 value 84.173899
iter 70 value 81.740260
iter 80 value 81.740063
iter 90 value 81.584103
iter 100 value 81.563161
final value 81.563161
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.153068
iter 10 value 94.489184
iter 20 value 94.457536
final value 94.052550
converged
Fitting Repeat 5
# weights: 305
initial value 99.492308
iter 10 value 94.482990
iter 20 value 94.479262
iter 30 value 94.396179
iter 40 value 94.053773
iter 50 value 94.052786
iter 60 value 84.530148
iter 70 value 82.524288
iter 80 value 81.990414
iter 90 value 81.554630
iter 100 value 80.658515
final value 80.658515
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 94.697452
iter 10 value 89.400212
iter 20 value 86.499490
iter 30 value 86.492190
iter 40 value 86.490414
iter 50 value 86.472219
iter 60 value 86.151464
iter 70 value 84.708106
iter 80 value 80.685625
iter 90 value 80.148570
iter 100 value 79.087124
final value 79.087124
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.585613
iter 10 value 94.074424
iter 20 value 87.558681
iter 30 value 82.322210
iter 40 value 81.564986
iter 50 value 81.122350
iter 60 value 79.992884
iter 70 value 79.991982
iter 80 value 79.988966
iter 90 value 79.717448
iter 100 value 79.678192
final value 79.678192
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 92.768649
iter 10 value 86.685509
iter 20 value 86.641645
iter 30 value 85.450438
iter 40 value 85.423233
iter 50 value 85.358251
iter 60 value 84.468204
final value 84.449523
converged
Fitting Repeat 4
# weights: 507
initial value 108.136219
iter 10 value 94.283097
iter 20 value 94.260814
iter 30 value 86.595261
iter 40 value 86.430647
iter 50 value 86.430233
iter 60 value 86.067840
final value 86.065710
converged
Fitting Repeat 5
# weights: 507
initial value 105.538474
iter 10 value 94.492466
iter 20 value 94.468413
iter 30 value 90.794613
iter 40 value 90.414420
iter 40 value 90.414420
iter 40 value 90.414420
final value 90.414420
converged
Fitting Repeat 1
# weights: 103
initial value 100.122550
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.472068
final value 94.354396
converged
Fitting Repeat 3
# weights: 103
initial value 95.036805
final value 94.354396
converged
Fitting Repeat 4
# weights: 103
initial value 101.333937
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.720012
final value 94.354395
converged
Fitting Repeat 1
# weights: 305
initial value 95.898090
iter 10 value 94.307176
final value 94.305883
converged
Fitting Repeat 2
# weights: 305
initial value 106.324133
final value 94.354396
converged
Fitting Repeat 3
# weights: 305
initial value 109.553886
iter 10 value 94.442082
final value 94.442073
converged
Fitting Repeat 4
# weights: 305
initial value 100.823129
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 105.082249
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 99.225543
iter 10 value 87.302761
final value 87.283812
converged
Fitting Repeat 2
# weights: 507
initial value 123.887485
final value 93.783647
converged
Fitting Repeat 3
# weights: 507
initial value 107.250279
iter 10 value 94.289319
final value 94.289216
converged
Fitting Repeat 4
# weights: 507
initial value 99.448320
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 113.021010
iter 10 value 94.354740
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 98.730393
iter 10 value 93.345305
iter 20 value 86.611919
iter 30 value 85.200566
iter 40 value 84.999687
iter 50 value 84.601697
iter 60 value 84.556739
final value 84.556728
converged
Fitting Repeat 2
# weights: 103
initial value 96.241241
iter 10 value 94.488618
iter 20 value 89.881122
iter 30 value 88.309180
iter 40 value 87.085722
iter 50 value 86.085103
iter 60 value 85.632778
iter 70 value 85.321651
iter 80 value 85.048549
final value 85.048030
converged
Fitting Repeat 3
# weights: 103
initial value 96.440594
iter 10 value 94.487773
iter 20 value 94.453607
iter 30 value 94.123314
iter 40 value 94.067991
iter 50 value 90.556496
iter 60 value 87.935468
iter 70 value 87.670571
iter 80 value 87.530636
iter 90 value 86.862888
iter 100 value 85.277267
final value 85.277267
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.466734
iter 10 value 94.490668
iter 20 value 94.328767
iter 30 value 92.209982
iter 40 value 91.108109
iter 50 value 87.402813
iter 60 value 86.427711
iter 70 value 85.935185
iter 80 value 85.027279
iter 90 value 84.944127
iter 100 value 84.940652
final value 84.940652
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 106.809982
iter 10 value 94.162480
iter 20 value 89.490150
iter 30 value 88.370048
iter 40 value 88.130832
iter 50 value 86.339822
iter 60 value 86.095703
iter 70 value 85.468989
final value 85.443703
converged
Fitting Repeat 1
# weights: 305
initial value 103.696381
iter 10 value 94.518607
iter 20 value 87.017019
iter 30 value 86.744508
iter 40 value 84.899111
iter 50 value 83.333813
iter 60 value 82.559673
iter 70 value 81.982202
iter 80 value 81.886430
iter 90 value 81.736371
iter 100 value 81.668823
final value 81.668823
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.813901
iter 10 value 94.489551
iter 20 value 93.877283
iter 30 value 87.130992
iter 40 value 85.832091
iter 50 value 85.734094
iter 60 value 83.468874
iter 70 value 82.777456
iter 80 value 82.336360
iter 90 value 82.233820
iter 100 value 82.189284
final value 82.189284
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.319093
iter 10 value 94.499812
iter 20 value 93.920008
iter 30 value 93.797569
iter 40 value 93.319028
iter 50 value 87.466966
iter 60 value 86.893632
iter 70 value 86.752624
iter 80 value 86.723437
iter 90 value 85.767742
iter 100 value 84.543021
final value 84.543021
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 120.756718
iter 10 value 94.707275
iter 20 value 94.392583
iter 30 value 89.384046
iter 40 value 87.489166
iter 50 value 86.080513
iter 60 value 85.534868
iter 70 value 85.272215
iter 80 value 85.215955
iter 90 value 84.115468
iter 100 value 82.358412
final value 82.358412
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.842597
iter 10 value 94.501300
iter 20 value 88.419921
iter 30 value 86.481407
iter 40 value 85.626848
iter 50 value 85.025741
iter 60 value 84.987235
iter 70 value 84.798781
iter 80 value 83.036374
iter 90 value 82.087541
iter 100 value 81.787761
final value 81.787761
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.446391
iter 10 value 94.675986
iter 20 value 93.438178
iter 30 value 89.336523
iter 40 value 87.370125
iter 50 value 86.906940
iter 60 value 84.841100
iter 70 value 83.309106
iter 80 value 82.801315
iter 90 value 82.253271
iter 100 value 81.946519
final value 81.946519
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.558221
iter 10 value 94.521318
iter 20 value 90.481898
iter 30 value 87.442200
iter 40 value 86.442317
iter 50 value 84.061751
iter 60 value 83.715067
iter 70 value 83.489568
iter 80 value 82.425243
iter 90 value 81.962705
iter 100 value 81.794330
final value 81.794330
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 112.816096
iter 10 value 94.305126
iter 20 value 86.294323
iter 30 value 85.737047
iter 40 value 85.295620
iter 50 value 84.526659
iter 60 value 82.878478
iter 70 value 82.609018
iter 80 value 82.166618
iter 90 value 82.079774
iter 100 value 81.989115
final value 81.989115
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 124.978599
iter 10 value 94.413682
iter 20 value 88.128084
iter 30 value 87.175397
iter 40 value 84.429083
iter 50 value 82.520358
iter 60 value 81.824267
iter 70 value 81.465817
iter 80 value 81.267966
iter 90 value 81.236621
iter 100 value 81.102548
final value 81.102548
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.126931
iter 10 value 94.788280
iter 20 value 94.392735
iter 30 value 94.313331
iter 40 value 88.049482
iter 50 value 87.118990
iter 60 value 86.011083
iter 70 value 84.921924
iter 80 value 83.688499
iter 90 value 82.773352
iter 100 value 82.172677
final value 82.172677
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.664328
final value 94.486171
converged
Fitting Repeat 2
# weights: 103
initial value 101.557747
final value 94.485944
converged
Fitting Repeat 3
# weights: 103
initial value 107.487271
iter 10 value 93.111790
iter 20 value 93.111218
iter 30 value 93.110641
final value 93.110576
converged
Fitting Repeat 4
# weights: 103
initial value 96.305496
final value 94.485871
converged
Fitting Repeat 5
# weights: 103
initial value 108.283851
final value 94.485725
converged
Fitting Repeat 1
# weights: 305
initial value 102.271246
iter 10 value 94.488650
iter 20 value 94.484235
iter 30 value 90.939023
iter 40 value 90.867040
iter 50 value 88.212928
iter 60 value 86.565934
final value 86.565213
converged
Fitting Repeat 2
# weights: 305
initial value 103.229766
iter 10 value 94.508151
iter 20 value 94.458696
iter 30 value 88.547321
iter 40 value 87.370502
iter 50 value 87.303955
iter 60 value 87.289942
final value 87.286201
converged
Fitting Repeat 3
# weights: 305
initial value 97.577407
iter 10 value 94.486038
iter 20 value 92.898335
iter 30 value 85.023158
iter 40 value 84.067023
iter 50 value 84.003053
iter 50 value 84.003052
iter 50 value 84.003052
final value 84.003052
converged
Fitting Repeat 4
# weights: 305
initial value 98.534715
iter 10 value 86.507709
iter 20 value 85.430876
iter 30 value 85.164398
iter 40 value 85.128402
iter 50 value 85.121365
iter 60 value 85.119560
final value 85.119055
converged
Fitting Repeat 5
# weights: 305
initial value 100.134131
iter 10 value 94.489415
iter 20 value 94.484463
final value 94.484284
converged
Fitting Repeat 1
# weights: 507
initial value 107.599082
iter 10 value 94.492721
iter 20 value 93.850838
iter 30 value 87.671035
final value 87.669857
converged
Fitting Repeat 2
# weights: 507
initial value 106.439644
iter 10 value 94.492260
iter 20 value 94.447083
iter 30 value 94.287255
iter 40 value 92.491213
iter 50 value 92.381688
iter 60 value 92.353803
final value 92.353757
converged
Fitting Repeat 3
# weights: 507
initial value 100.163698
iter 10 value 94.362751
iter 20 value 94.342841
iter 30 value 89.418376
iter 40 value 89.329345
final value 89.329269
converged
Fitting Repeat 4
# weights: 507
initial value 97.444312
iter 10 value 94.423326
iter 20 value 93.982332
iter 30 value 93.972762
iter 40 value 93.971308
iter 50 value 93.967279
iter 60 value 90.855405
iter 70 value 87.992400
iter 80 value 86.051412
iter 90 value 85.884231
iter 100 value 84.286077
final value 84.286077
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.752417
iter 10 value 94.362473
iter 20 value 94.355198
final value 94.355134
converged
Fitting Repeat 1
# weights: 103
initial value 104.008814
final value 93.915746
converged
Fitting Repeat 2
# weights: 103
initial value 100.746317
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 97.967902
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.140571
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 104.521890
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 96.427109
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 95.066476
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 123.387123
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 104.796871
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 97.126879
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 100.116898
iter 10 value 88.559971
final value 88.332628
converged
Fitting Repeat 2
# weights: 507
initial value 103.902155
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 100.419508
final value 93.915746
converged
Fitting Repeat 4
# weights: 507
initial value 118.427425
final value 93.915746
converged
Fitting Repeat 5
# weights: 507
initial value 103.655383
final value 94.011429
converged
Fitting Repeat 1
# weights: 103
initial value 97.169708
iter 10 value 94.035524
iter 20 value 93.563232
iter 30 value 93.387829
iter 40 value 92.879351
iter 50 value 87.111521
iter 60 value 85.474995
iter 70 value 84.893299
iter 80 value 84.822912
final value 84.822252
converged
Fitting Repeat 2
# weights: 103
initial value 99.255177
iter 10 value 94.088871
iter 20 value 93.965643
iter 30 value 93.458829
iter 40 value 93.382860
iter 50 value 91.416291
iter 60 value 88.778425
iter 70 value 87.454751
iter 80 value 85.309072
iter 90 value 84.931606
iter 100 value 84.822254
final value 84.822254
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 101.203019
iter 10 value 93.803232
iter 20 value 87.596682
iter 30 value 85.550398
iter 40 value 85.415686
iter 50 value 85.289950
iter 60 value 85.284391
iter 70 value 85.281358
final value 85.281348
converged
Fitting Repeat 4
# weights: 103
initial value 101.162336
iter 10 value 94.052627
iter 20 value 93.529236
iter 30 value 88.446852
iter 40 value 86.922338
iter 50 value 85.277125
iter 60 value 84.914183
iter 70 value 84.859754
iter 80 value 84.840599
iter 90 value 84.822253
final value 84.822251
converged
Fitting Repeat 5
# weights: 103
initial value 96.949081
iter 10 value 94.038539
iter 20 value 91.483955
iter 30 value 88.434088
iter 40 value 87.703052
iter 50 value 87.086050
iter 60 value 84.997835
iter 70 value 83.219703
iter 80 value 82.654833
iter 90 value 82.569730
iter 100 value 82.380979
final value 82.380979
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 100.943848
iter 10 value 93.850660
iter 20 value 89.582023
iter 30 value 86.065972
iter 40 value 85.870884
iter 50 value 85.177407
iter 60 value 85.072915
iter 70 value 84.938633
iter 80 value 83.247464
iter 90 value 81.498181
iter 100 value 81.229699
final value 81.229699
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.058608
iter 10 value 94.318023
iter 20 value 94.005363
iter 30 value 87.415037
iter 40 value 86.741558
iter 50 value 85.857125
iter 60 value 84.397081
iter 70 value 83.020533
iter 80 value 82.705126
iter 90 value 82.405573
iter 100 value 81.779691
final value 81.779691
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.883318
iter 10 value 96.760042
iter 20 value 93.519248
iter 30 value 92.176980
iter 40 value 86.032794
iter 50 value 85.734799
iter 60 value 84.726619
iter 70 value 84.243578
iter 80 value 84.171609
iter 90 value 84.119168
iter 100 value 83.231057
final value 83.231057
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.310305
iter 10 value 94.198627
iter 20 value 89.418195
iter 30 value 88.289220
iter 40 value 85.192455
iter 50 value 83.675285
iter 60 value 83.296008
iter 70 value 81.965046
iter 80 value 81.640213
iter 90 value 81.357977
iter 100 value 81.350526
final value 81.350526
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.744358
iter 10 value 94.038999
iter 20 value 93.764204
iter 30 value 93.479625
iter 40 value 92.053558
iter 50 value 89.247622
iter 60 value 86.476245
iter 70 value 85.372376
iter 80 value 84.095854
iter 90 value 82.671144
iter 100 value 82.076138
final value 82.076138
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.547668
iter 10 value 93.143187
iter 20 value 88.557853
iter 30 value 85.858823
iter 40 value 83.262374
iter 50 value 82.835320
iter 60 value 81.914699
iter 70 value 81.303257
iter 80 value 80.981153
iter 90 value 80.722654
iter 100 value 80.561117
final value 80.561117
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.202753
iter 10 value 94.032375
iter 20 value 89.557673
iter 30 value 87.773769
iter 40 value 86.334124
iter 50 value 85.950198
iter 60 value 84.081633
iter 70 value 82.136888
iter 80 value 81.569976
iter 90 value 81.340841
iter 100 value 81.200791
final value 81.200791
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 117.675785
iter 10 value 93.504211
iter 20 value 86.408235
iter 30 value 85.867468
iter 40 value 84.145037
iter 50 value 83.044330
iter 60 value 82.489137
iter 70 value 81.782024
iter 80 value 81.327974
iter 90 value 81.058470
iter 100 value 80.967188
final value 80.967188
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.024662
iter 10 value 93.896412
iter 20 value 89.914036
iter 30 value 87.103518
iter 40 value 85.317686
iter 50 value 84.629866
iter 60 value 84.347321
iter 70 value 84.094128
iter 80 value 83.247579
iter 90 value 82.473545
iter 100 value 81.768857
final value 81.768857
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.542697
iter 10 value 94.601622
iter 20 value 91.799593
iter 30 value 89.486904
iter 40 value 86.324746
iter 50 value 85.405080
iter 60 value 84.880881
iter 70 value 84.583974
iter 80 value 82.379701
iter 90 value 81.262378
iter 100 value 80.970381
final value 80.970381
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.328063
final value 94.054468
converged
Fitting Repeat 2
# weights: 103
initial value 102.032858
iter 10 value 93.729767
iter 20 value 93.374182
iter 30 value 93.247287
iter 40 value 92.406423
iter 50 value 91.980993
final value 91.917297
converged
Fitting Repeat 3
# weights: 103
initial value 94.579433
iter 10 value 93.917506
iter 10 value 93.917506
iter 10 value 93.917506
final value 93.917506
converged
Fitting Repeat 4
# weights: 103
initial value 98.420456
final value 94.054616
converged
Fitting Repeat 5
# weights: 103
initial value 100.405570
final value 94.054572
converged
Fitting Repeat 1
# weights: 305
initial value 98.765696
iter 10 value 93.983611
iter 20 value 88.478558
iter 30 value 84.964427
iter 40 value 84.550603
iter 50 value 84.548395
iter 60 value 84.544429
iter 70 value 84.145454
iter 80 value 83.096163
iter 90 value 82.904554
iter 100 value 82.899230
final value 82.899230
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 135.146922
iter 10 value 94.058052
iter 20 value 94.050450
iter 30 value 93.511599
iter 40 value 93.202297
iter 50 value 89.889957
iter 60 value 85.051533
iter 70 value 84.458511
iter 80 value 84.408705
final value 84.408648
converged
Fitting Repeat 3
# weights: 305
initial value 110.331419
iter 10 value 94.057947
iter 20 value 94.046111
iter 30 value 89.573691
iter 40 value 85.637871
iter 50 value 85.633827
iter 60 value 85.631875
iter 70 value 84.671896
iter 80 value 84.484250
final value 84.482777
converged
Fitting Repeat 4
# weights: 305
initial value 95.458221
iter 10 value 94.057245
iter 20 value 92.657155
iter 30 value 88.129756
iter 40 value 87.022328
iter 50 value 87.021730
final value 87.021659
converged
Fitting Repeat 5
# weights: 305
initial value 99.550789
iter 10 value 94.058142
iter 20 value 94.052955
iter 30 value 93.873582
iter 40 value 85.634451
iter 50 value 85.634074
iter 60 value 85.629879
iter 70 value 83.831827
iter 80 value 81.256236
iter 90 value 80.405543
final value 80.404274
converged
Fitting Repeat 1
# weights: 507
initial value 97.089559
iter 10 value 93.519571
iter 20 value 93.512501
iter 30 value 85.765643
iter 40 value 85.316180
iter 50 value 85.314758
iter 60 value 85.143611
iter 70 value 84.816684
iter 80 value 83.881146
iter 90 value 81.962649
iter 100 value 79.534411
final value 79.534411
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 95.222696
iter 10 value 86.107513
iter 20 value 86.096746
iter 30 value 85.434034
iter 40 value 85.433640
final value 85.430785
converged
Fitting Repeat 3
# weights: 507
initial value 102.665579
iter 10 value 93.924124
iter 20 value 93.916886
final value 93.916713
converged
Fitting Repeat 4
# weights: 507
initial value 115.270171
iter 10 value 94.060799
iter 20 value 93.980323
iter 30 value 93.111250
iter 40 value 91.049546
iter 50 value 88.668376
iter 60 value 84.809612
iter 70 value 83.885434
iter 80 value 83.781817
final value 83.781714
converged
Fitting Repeat 5
# weights: 507
initial value 98.692471
iter 10 value 85.174394
iter 20 value 85.074892
iter 30 value 84.419403
final value 84.418670
converged
Fitting Repeat 1
# weights: 305
initial value 121.309612
iter 10 value 117.895192
iter 20 value 116.303446
iter 30 value 110.319674
iter 40 value 110.230453
iter 50 value 108.324895
final value 108.324710
converged
Fitting Repeat 2
# weights: 305
initial value 119.685540
iter 10 value 117.895369
iter 20 value 117.684539
iter 30 value 117.684183
iter 40 value 117.683756
iter 50 value 117.682272
iter 60 value 117.538862
final value 117.538856
converged
Fitting Repeat 3
# weights: 305
initial value 119.802960
iter 10 value 117.896912
iter 20 value 117.238531
iter 30 value 114.260588
iter 40 value 114.231640
iter 50 value 114.231289
iter 60 value 113.800589
iter 70 value 113.773867
iter 80 value 113.772133
iter 90 value 113.632612
final value 113.632476
converged
Fitting Repeat 4
# weights: 305
initial value 131.627063
iter 10 value 117.894807
iter 20 value 117.890334
iter 20 value 117.890334
iter 20 value 117.890334
final value 117.890334
converged
Fitting Repeat 5
# weights: 305
initial value 119.346855
iter 10 value 117.894648
final value 117.890301
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Mon May 25 20:01:02 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
18.696 0.582 69.878
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 16.816 | 0.061 | 17.090 | |
| FreqInteractors | 0.155 | 0.006 | 0.160 | |
| calculateAAC | 0.013 | 0.000 | 0.013 | |
| calculateAutocor | 0.119 | 0.006 | 0.125 | |
| calculateCTDC | 0.026 | 0.001 | 0.026 | |
| calculateCTDD | 0.161 | 0.013 | 0.174 | |
| calculateCTDT | 0.049 | 0.004 | 0.054 | |
| calculateCTriad | 0.146 | 0.006 | 0.151 | |
| calculateDC | 0.031 | 0.003 | 0.034 | |
| calculateF | 0.100 | 0.001 | 0.100 | |
| calculateKSAAP | 0.033 | 0.002 | 0.035 | |
| calculateQD_Sm | 0.664 | 0.028 | 0.692 | |
| calculateTC | 0.586 | 0.047 | 0.633 | |
| calculateTC_Sm | 0.099 | 0.005 | 0.104 | |
| corr_plot | 16.935 | 0.085 | 17.060 | |
| enrichfindP | 0.199 | 0.034 | 8.509 | |
| enrichfind_hp | 0.016 | 0.002 | 1.005 | |
| enrichplot | 0.152 | 0.002 | 0.154 | |
| filter_missing_values | 0.000 | 0.001 | 0.001 | |
| getFASTA | 0.030 | 0.006 | 4.376 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0 | 0 | 0 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.001 | 0.001 | |
| plotPPI | 0.031 | 0.001 | 0.032 | |
| pred_ensembel | 6.050 | 0.142 | 5.469 | |
| var_imp | 16.849 | 0.088 | 16.950 | |