| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-22 11:37 -0400 (Fri, 22 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4936 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4621 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1017/2378 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.19.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | ||||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.19.0.tar.gz |
| StartedAt: 2026-05-21 19:59:45 -0400 (Thu, 21 May 2026) |
| EndedAt: 2026-05-21 20:02:55 -0400 (Thu, 21 May 2026) |
| EllapsedTime: 190.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 Patched (2026-05-01 r89994)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-21 23:59:45 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 16.941 0.088 17.181
FSmethod 16.897 0.065 17.217
var_imp 16.813 0.079 16.905
pred_ensembel 6.039 0.107 5.438
enrichfindP 0.197 0.032 9.808
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.19.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 101.642498
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.456804
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 94.508837
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.450708
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 104.544829
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.453198
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 96.636622
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.702048
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.699163
final value 94.354396
converged
Fitting Repeat 5
# weights: 305
initial value 98.655412
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 104.661993
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 109.594184
final value 94.354396
converged
Fitting Repeat 3
# weights: 507
initial value 96.097789
iter 10 value 89.980153
iter 20 value 89.622024
final value 89.621533
converged
Fitting Repeat 4
# weights: 507
initial value 97.283758
iter 10 value 94.484215
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 125.159839
iter 10 value 95.986179
iter 20 value 90.415665
iter 30 value 83.282235
iter 40 value 83.264529
final value 83.264479
converged
Fitting Repeat 1
# weights: 103
initial value 97.314319
iter 10 value 94.364629
iter 20 value 93.944783
iter 30 value 93.909008
iter 40 value 83.679385
iter 50 value 82.905893
iter 60 value 81.940150
iter 70 value 81.452059
iter 80 value 80.798861
iter 90 value 80.758247
final value 80.758242
converged
Fitting Repeat 2
# weights: 103
initial value 114.197311
iter 10 value 93.802033
iter 20 value 83.652552
iter 30 value 82.894549
iter 40 value 82.857037
iter 50 value 82.832405
iter 60 value 82.598727
iter 70 value 81.556361
iter 80 value 81.023523
iter 90 value 80.960415
final value 80.960071
converged
Fitting Repeat 3
# weights: 103
initial value 98.624422
iter 10 value 94.488574
iter 20 value 88.445758
iter 30 value 87.486259
iter 40 value 86.103413
iter 50 value 85.563440
iter 60 value 85.345131
iter 70 value 81.217339
iter 80 value 81.043389
iter 90 value 80.977712
iter 100 value 80.834983
final value 80.834983
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 102.545587
iter 10 value 94.483375
iter 20 value 89.465243
iter 30 value 86.664367
iter 40 value 85.411331
iter 50 value 81.525664
iter 60 value 81.034865
iter 70 value 80.960126
final value 80.960085
converged
Fitting Repeat 5
# weights: 103
initial value 98.746690
iter 10 value 94.487654
iter 20 value 94.374697
iter 30 value 94.154161
iter 40 value 94.043304
iter 50 value 94.022765
iter 60 value 92.465608
iter 70 value 86.397554
iter 80 value 85.784830
iter 90 value 82.013100
iter 100 value 81.631860
final value 81.631860
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 124.734412
iter 10 value 94.593120
iter 20 value 93.972148
iter 30 value 87.374920
iter 40 value 85.239629
iter 50 value 83.751144
iter 60 value 82.101781
iter 70 value 81.058838
iter 80 value 79.889246
iter 90 value 79.537923
iter 100 value 79.398144
final value 79.398144
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 117.143845
iter 10 value 94.486862
iter 20 value 92.912507
iter 30 value 86.438321
iter 40 value 84.328646
iter 50 value 83.409960
iter 60 value 82.785352
iter 70 value 82.649270
iter 80 value 81.931743
iter 90 value 81.608399
iter 100 value 81.525809
final value 81.525809
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 114.773903
iter 10 value 94.199289
iter 20 value 83.767809
iter 30 value 83.196453
iter 40 value 82.787707
iter 50 value 81.567342
iter 60 value 80.921165
iter 70 value 80.667526
iter 80 value 80.560399
iter 90 value 79.643415
iter 100 value 79.290201
final value 79.290201
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.094561
iter 10 value 95.824548
iter 20 value 84.098388
iter 30 value 82.001362
iter 40 value 81.589092
iter 50 value 80.738717
iter 60 value 79.522667
iter 70 value 79.129394
iter 80 value 78.903467
iter 90 value 78.794527
iter 100 value 78.720036
final value 78.720036
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.244580
iter 10 value 95.412009
iter 20 value 92.615316
iter 30 value 85.662202
iter 40 value 80.807075
iter 50 value 80.366987
iter 60 value 80.274112
iter 70 value 80.199506
iter 80 value 80.145907
iter 90 value 80.067602
iter 100 value 79.467764
final value 79.467764
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.317715
iter 10 value 94.534950
iter 20 value 91.853331
iter 30 value 87.439390
iter 40 value 84.182470
iter 50 value 83.024336
iter 60 value 82.138472
iter 70 value 81.740782
iter 80 value 80.824442
iter 90 value 80.313411
iter 100 value 79.682118
final value 79.682118
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.371233
iter 10 value 94.053539
iter 20 value 87.476830
iter 30 value 83.077708
iter 40 value 82.679453
iter 50 value 82.061565
iter 60 value 81.836870
iter 70 value 81.649841
iter 80 value 81.238752
iter 90 value 79.615767
iter 100 value 79.070706
final value 79.070706
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.367246
iter 10 value 94.486245
iter 20 value 86.216166
iter 30 value 83.513662
iter 40 value 80.475644
iter 50 value 79.666638
iter 60 value 79.342674
iter 70 value 79.210693
iter 80 value 78.935775
iter 90 value 78.730998
iter 100 value 78.718445
final value 78.718445
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.093887
iter 10 value 97.045640
iter 20 value 90.996452
iter 30 value 82.958751
iter 40 value 81.904571
iter 50 value 81.728675
iter 60 value 81.516137
iter 70 value 80.981315
iter 80 value 79.921387
iter 90 value 79.540867
iter 100 value 79.388154
final value 79.388154
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.178519
iter 10 value 94.358217
iter 20 value 87.974592
iter 30 value 86.367587
iter 40 value 82.282722
iter 50 value 80.282876
iter 60 value 80.029122
iter 70 value 79.398338
iter 80 value 79.193452
iter 90 value 78.956902
iter 100 value 78.767928
final value 78.767928
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.871130
iter 10 value 94.355833
iter 20 value 93.921433
iter 30 value 90.845941
iter 40 value 88.377875
iter 50 value 83.994981
iter 60 value 83.908318
iter 70 value 83.697428
iter 80 value 83.656280
final value 83.656017
converged
Fitting Repeat 2
# weights: 103
initial value 97.689237
iter 10 value 89.223960
iter 20 value 87.508445
iter 30 value 86.609012
iter 40 value 86.509178
iter 50 value 86.344575
iter 60 value 86.189812
iter 70 value 86.185373
iter 80 value 86.182856
iter 90 value 85.216483
iter 100 value 84.055461
final value 84.055461
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.036028
final value 94.485964
converged
Fitting Repeat 4
# weights: 103
initial value 99.762040
final value 94.356034
converged
Fitting Repeat 5
# weights: 103
initial value 102.244583
iter 10 value 94.485777
iter 20 value 91.618120
final value 86.701880
converged
Fitting Repeat 1
# weights: 305
initial value 101.182096
iter 10 value 94.174767
iter 20 value 94.171936
iter 30 value 93.828956
iter 40 value 82.640637
iter 50 value 82.018227
iter 60 value 81.602503
iter 70 value 79.973006
iter 80 value 79.930838
iter 90 value 79.919966
iter 100 value 79.917673
final value 79.917673
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.935675
iter 10 value 94.103970
iter 20 value 94.057655
final value 94.053154
converged
Fitting Repeat 3
# weights: 305
initial value 102.597721
iter 10 value 94.488851
iter 20 value 93.830652
iter 30 value 86.962943
iter 40 value 86.694790
iter 50 value 86.693619
iter 60 value 83.834967
iter 70 value 83.802955
iter 80 value 83.494344
iter 90 value 83.327213
final value 83.327081
converged
Fitting Repeat 4
# weights: 305
initial value 114.017197
iter 10 value 94.489760
iter 20 value 94.484636
final value 94.484631
converged
Fitting Repeat 5
# weights: 305
initial value 96.750979
iter 10 value 94.489143
iter 20 value 94.480739
iter 30 value 93.529882
iter 40 value 93.525200
iter 50 value 91.375115
iter 60 value 88.969067
iter 70 value 88.295112
iter 80 value 82.554920
iter 90 value 81.838649
iter 100 value 80.367254
final value 80.367254
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 96.795670
iter 10 value 94.331160
iter 20 value 90.673945
iter 30 value 83.292943
iter 40 value 79.713406
iter 50 value 77.747585
iter 60 value 77.721135
iter 70 value 77.720242
iter 80 value 77.719734
iter 90 value 77.718862
iter 100 value 77.716743
final value 77.716743
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.888535
iter 10 value 94.172761
iter 20 value 93.911124
iter 30 value 91.471411
iter 40 value 87.528835
iter 50 value 87.296536
iter 60 value 86.145194
iter 70 value 84.492202
iter 80 value 83.212205
iter 90 value 80.201882
iter 100 value 79.982950
final value 79.982950
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.187170
iter 10 value 94.172402
iter 20 value 94.168935
iter 30 value 93.840272
iter 40 value 93.839412
final value 93.839359
converged
Fitting Repeat 4
# weights: 507
initial value 95.403692
iter 10 value 90.881732
iter 20 value 83.273902
iter 30 value 83.268557
iter 40 value 82.915636
iter 50 value 82.529746
iter 60 value 81.916933
iter 70 value 81.453450
iter 80 value 81.308635
iter 90 value 81.308424
iter 100 value 81.304310
final value 81.304310
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.171920
iter 10 value 94.362048
iter 20 value 94.210152
iter 30 value 94.179401
iter 40 value 92.552735
iter 50 value 90.394924
iter 60 value 90.335240
iter 70 value 90.267014
iter 80 value 90.245366
iter 90 value 89.754385
iter 100 value 81.555959
final value 81.555959
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.063009
final value 94.052911
converged
Fitting Repeat 2
# weights: 103
initial value 94.545262
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.375708
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 113.086429
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 103.579790
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 95.891993
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 115.035218
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 113.716347
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 99.568191
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 102.951060
final value 94.038251
converged
Fitting Repeat 1
# weights: 507
initial value 96.504027
iter 10 value 85.604232
iter 20 value 79.946322
iter 30 value 78.389573
iter 40 value 78.358168
iter 50 value 78.356890
iter 60 value 78.356382
final value 78.356381
converged
Fitting Repeat 2
# weights: 507
initial value 95.232692
iter 10 value 93.894167
iter 20 value 93.893852
final value 93.893850
converged
Fitting Repeat 3
# weights: 507
initial value 95.586910
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 113.989032
final value 94.038251
converged
Fitting Repeat 5
# weights: 507
initial value 97.374660
iter 10 value 86.426778
iter 20 value 84.667199
final value 84.664401
converged
Fitting Repeat 1
# weights: 103
initial value 96.774135
iter 10 value 94.059659
iter 20 value 94.054949
iter 30 value 93.965793
iter 40 value 91.713323
iter 50 value 90.844733
iter 60 value 84.272536
iter 70 value 82.962831
iter 80 value 82.549228
iter 90 value 82.413230
iter 100 value 82.387573
final value 82.387573
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.137547
iter 10 value 94.056805
iter 20 value 93.055896
iter 30 value 91.403061
iter 40 value 90.938808
iter 50 value 90.789312
iter 60 value 90.195915
iter 70 value 90.084568
iter 80 value 90.077572
iter 80 value 90.077572
iter 80 value 90.077572
final value 90.077572
converged
Fitting Repeat 3
# weights: 103
initial value 105.025293
iter 10 value 94.040343
iter 20 value 91.099387
iter 30 value 86.355625
iter 40 value 82.942901
iter 50 value 82.645924
iter 60 value 82.494734
iter 70 value 82.268496
iter 80 value 82.029922
iter 90 value 81.969981
final value 81.969979
converged
Fitting Repeat 4
# weights: 103
initial value 98.020427
iter 10 value 94.093753
iter 20 value 94.052167
iter 30 value 93.912616
iter 40 value 87.498033
iter 50 value 86.732046
iter 60 value 86.667831
iter 70 value 86.505365
iter 80 value 86.466594
iter 90 value 83.839431
iter 100 value 81.874383
final value 81.874383
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.737163
iter 10 value 93.693723
iter 20 value 88.336846
iter 30 value 86.462522
iter 40 value 86.292587
iter 50 value 86.112874
iter 60 value 86.012753
iter 70 value 85.973100
iter 80 value 83.868945
iter 90 value 82.477763
iter 100 value 82.403200
final value 82.403200
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 119.928397
iter 10 value 93.912001
iter 20 value 91.873245
iter 30 value 85.094368
iter 40 value 83.821563
iter 50 value 82.554981
iter 60 value 81.235296
iter 70 value 80.996359
iter 80 value 80.305162
iter 90 value 79.385237
iter 100 value 79.179975
final value 79.179975
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.793826
iter 10 value 94.086956
iter 20 value 92.600595
iter 30 value 90.267668
iter 40 value 86.630328
iter 50 value 86.195892
iter 60 value 84.518548
iter 70 value 82.786417
iter 80 value 82.202178
iter 90 value 82.182481
iter 100 value 81.662147
final value 81.662147
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.474344
iter 10 value 94.071117
iter 20 value 89.232012
iter 30 value 84.897570
iter 40 value 84.401566
iter 50 value 84.235311
iter 60 value 82.978903
iter 70 value 80.887266
iter 80 value 79.889983
iter 90 value 78.791922
iter 100 value 78.487792
final value 78.487792
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 119.377951
iter 10 value 94.094428
iter 20 value 92.220263
iter 30 value 83.537748
iter 40 value 79.952654
iter 50 value 79.299755
iter 60 value 78.937405
iter 70 value 78.733692
iter 80 value 78.682866
iter 90 value 78.627771
iter 100 value 78.619851
final value 78.619851
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.666169
iter 10 value 94.017950
iter 20 value 91.076200
iter 30 value 86.050986
iter 40 value 85.376181
iter 50 value 81.143507
iter 60 value 80.172460
iter 70 value 79.089474
iter 80 value 78.223747
iter 90 value 78.083399
iter 100 value 78.073927
final value 78.073927
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.643571
iter 10 value 94.242628
iter 20 value 91.204865
iter 30 value 84.599273
iter 40 value 80.048812
iter 50 value 79.340026
iter 60 value 78.796546
iter 70 value 78.621874
iter 80 value 78.455524
iter 90 value 78.369833
iter 100 value 78.279193
final value 78.279193
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.756751
iter 10 value 94.341348
iter 20 value 83.951444
iter 30 value 82.440354
iter 40 value 79.823498
iter 50 value 79.057428
iter 60 value 78.474511
iter 70 value 78.102111
iter 80 value 77.562384
iter 90 value 77.448256
iter 100 value 77.422183
final value 77.422183
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 123.227551
iter 10 value 93.951611
iter 20 value 84.528223
iter 30 value 82.869922
iter 40 value 80.121447
iter 50 value 78.983623
iter 60 value 78.233080
iter 70 value 77.860371
iter 80 value 77.658350
iter 90 value 77.616876
iter 100 value 77.561351
final value 77.561351
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.906576
iter 10 value 93.267893
iter 20 value 84.377538
iter 30 value 80.822964
iter 40 value 79.491007
iter 50 value 78.673087
iter 60 value 78.433893
iter 70 value 77.989777
iter 80 value 77.736889
iter 90 value 77.690430
iter 100 value 77.642741
final value 77.642741
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.768352
iter 10 value 94.197925
iter 20 value 92.555195
iter 30 value 85.875251
iter 40 value 85.028073
iter 50 value 82.849699
iter 60 value 81.124319
iter 70 value 79.293441
iter 80 value 78.460605
iter 90 value 78.199470
iter 100 value 78.173926
final value 78.173926
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.633998
final value 94.054806
converged
Fitting Repeat 2
# weights: 103
initial value 97.831217
final value 94.039666
converged
Fitting Repeat 3
# weights: 103
initial value 98.990143
final value 94.054797
converged
Fitting Repeat 4
# weights: 103
initial value 107.355067
iter 10 value 94.054518
iter 20 value 94.052966
iter 30 value 92.253654
iter 40 value 86.606891
iter 50 value 86.483025
iter 60 value 86.480612
final value 86.478670
converged
Fitting Repeat 5
# weights: 103
initial value 94.728117
iter 10 value 94.039893
iter 20 value 94.038410
final value 94.038273
converged
Fitting Repeat 1
# weights: 305
initial value 99.099957
iter 10 value 94.043911
iter 20 value 93.989410
iter 30 value 93.984486
iter 40 value 93.980355
iter 50 value 91.777798
iter 60 value 88.009408
iter 70 value 86.084191
iter 80 value 85.720271
final value 85.719739
converged
Fitting Repeat 2
# weights: 305
initial value 103.377678
iter 10 value 94.043091
iter 20 value 94.038433
final value 94.038293
converged
Fitting Repeat 3
# weights: 305
initial value 98.433700
iter 10 value 94.057971
iter 20 value 94.033656
iter 30 value 93.763065
iter 40 value 86.837566
iter 50 value 82.309844
iter 60 value 81.714043
iter 70 value 79.213690
iter 80 value 79.077983
iter 90 value 78.862295
iter 100 value 78.853229
final value 78.853229
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 96.355033
iter 10 value 94.057699
iter 20 value 90.179463
iter 30 value 85.509295
final value 85.509283
converged
Fitting Repeat 5
# weights: 305
initial value 110.616966
iter 10 value 94.043389
iter 20 value 94.039734
iter 30 value 93.571737
iter 40 value 90.481174
iter 50 value 88.534852
iter 60 value 88.129406
iter 70 value 87.513406
iter 80 value 85.610357
iter 90 value 85.408538
iter 100 value 85.407466
final value 85.407466
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 117.072544
iter 10 value 94.061092
iter 20 value 94.051701
iter 30 value 93.847185
iter 40 value 90.780160
iter 50 value 87.590462
iter 60 value 87.570003
final value 87.569273
converged
Fitting Repeat 2
# weights: 507
initial value 119.636008
iter 10 value 91.674186
iter 20 value 85.634763
iter 30 value 84.982073
iter 40 value 84.880585
iter 50 value 84.830204
iter 60 value 84.815660
iter 70 value 84.803692
iter 80 value 84.616014
iter 90 value 84.366387
iter 100 value 82.696443
final value 82.696443
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 121.343411
iter 10 value 94.046496
iter 20 value 94.039069
iter 30 value 85.991377
iter 40 value 83.604914
final value 83.603899
converged
Fitting Repeat 4
# weights: 507
initial value 96.216135
iter 10 value 93.970124
iter 20 value 93.956736
iter 30 value 93.890992
iter 40 value 92.397265
iter 50 value 90.392506
iter 60 value 90.201793
final value 90.201554
converged
Fitting Repeat 5
# weights: 507
initial value 117.874082
iter 10 value 93.599308
iter 20 value 93.539828
iter 30 value 93.533429
iter 40 value 93.492387
iter 50 value 93.489492
iter 60 value 93.489008
iter 70 value 93.488588
iter 80 value 93.488330
final value 93.488305
converged
Fitting Repeat 1
# weights: 103
initial value 100.146336
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.765758
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.538308
final value 94.484137
converged
Fitting Repeat 4
# weights: 103
initial value 102.611448
iter 10 value 94.276734
final value 94.275362
converged
Fitting Repeat 5
# weights: 103
initial value 94.739255
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 115.853963
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 96.168803
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 95.977499
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 106.106829
iter 10 value 94.460483
iter 20 value 94.275363
iter 20 value 94.275362
iter 20 value 94.275362
final value 94.275362
converged
Fitting Repeat 5
# weights: 305
initial value 97.812579
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 105.133090
iter 10 value 89.581647
iter 20 value 87.229529
iter 30 value 87.227787
final value 87.227601
converged
Fitting Repeat 2
# weights: 507
initial value 99.251594
iter 10 value 94.275358
iter 10 value 94.275358
iter 10 value 94.275358
final value 94.275358
converged
Fitting Repeat 3
# weights: 507
initial value 96.326172
final value 94.409357
converged
Fitting Repeat 4
# weights: 507
initial value 97.532268
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 109.737539
final value 94.484137
converged
Fitting Repeat 1
# weights: 103
initial value 98.941146
iter 10 value 94.333179
iter 20 value 93.345913
iter 30 value 90.640972
iter 40 value 90.422339
iter 50 value 89.479988
iter 60 value 86.783873
iter 70 value 84.117672
iter 80 value 83.751253
iter 90 value 83.456117
iter 100 value 83.398126
final value 83.398126
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.249322
iter 10 value 94.490411
iter 20 value 94.389322
iter 30 value 94.333782
iter 40 value 94.327060
iter 50 value 89.720820
iter 60 value 86.579200
iter 70 value 85.644143
iter 80 value 84.766580
iter 90 value 84.180088
iter 100 value 83.754996
final value 83.754996
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 104.460823
iter 10 value 94.455326
iter 20 value 94.227977
iter 30 value 89.192367
iter 40 value 88.731835
iter 50 value 86.086867
iter 60 value 85.486746
iter 70 value 85.106970
iter 80 value 84.765135
final value 84.764951
converged
Fitting Repeat 4
# weights: 103
initial value 99.536685
iter 10 value 94.377613
iter 20 value 87.941810
iter 30 value 87.328652
iter 40 value 86.085797
iter 50 value 85.378230
iter 60 value 84.494605
iter 70 value 83.865464
iter 80 value 83.856183
iter 90 value 83.476068
iter 100 value 83.054898
final value 83.054898
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.352324
iter 10 value 94.487094
iter 20 value 94.296671
iter 30 value 91.707061
iter 40 value 88.188485
iter 50 value 87.245587
iter 60 value 85.997606
iter 70 value 84.335918
iter 80 value 83.379400
iter 90 value 83.223339
iter 100 value 83.188908
final value 83.188908
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 115.810740
iter 10 value 94.498450
iter 20 value 91.609154
iter 30 value 87.093252
iter 40 value 84.602872
iter 50 value 82.629927
iter 60 value 82.043104
iter 70 value 81.831558
iter 80 value 81.752613
iter 90 value 81.722065
iter 100 value 81.626495
final value 81.626495
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.123942
iter 10 value 94.208186
iter 20 value 87.246434
iter 30 value 85.811737
iter 40 value 84.311344
iter 50 value 83.337178
iter 60 value 82.936237
iter 70 value 82.600889
iter 80 value 82.206634
iter 90 value 82.156686
iter 100 value 82.151722
final value 82.151722
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.706288
iter 10 value 94.310732
iter 20 value 93.119396
iter 30 value 87.834626
iter 40 value 85.047157
iter 50 value 84.674457
iter 60 value 84.231931
iter 70 value 82.935882
iter 80 value 82.397492
iter 90 value 82.178782
iter 100 value 82.086740
final value 82.086740
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 114.872578
iter 10 value 94.423924
iter 20 value 91.227400
iter 30 value 87.870318
iter 40 value 84.664143
iter 50 value 83.748140
iter 60 value 83.245486
iter 70 value 82.263392
iter 80 value 81.861404
iter 90 value 81.497520
iter 100 value 81.349655
final value 81.349655
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.703321
iter 10 value 94.587063
iter 20 value 93.873877
iter 30 value 90.211690
iter 40 value 87.143805
iter 50 value 84.648194
iter 60 value 84.089671
iter 70 value 83.776636
iter 80 value 83.041193
iter 90 value 82.214308
iter 100 value 81.585738
final value 81.585738
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.025023
iter 10 value 94.469845
iter 20 value 88.757243
iter 30 value 86.927893
iter 40 value 84.682696
iter 50 value 83.440242
iter 60 value 83.082985
iter 70 value 82.755729
iter 80 value 82.082176
iter 90 value 81.651777
iter 100 value 81.357368
final value 81.357368
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.593790
iter 10 value 94.552217
iter 20 value 93.573106
iter 30 value 88.326301
iter 40 value 87.480449
iter 50 value 86.859026
iter 60 value 86.623189
iter 70 value 86.019929
iter 80 value 84.539776
iter 90 value 83.715135
iter 100 value 83.111921
final value 83.111921
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.450592
iter 10 value 94.465057
iter 20 value 90.127558
iter 30 value 87.797398
iter 40 value 86.670706
iter 50 value 86.051301
iter 60 value 84.006471
iter 70 value 82.949804
iter 80 value 82.902717
iter 90 value 82.841455
iter 100 value 82.820628
final value 82.820628
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.430821
iter 10 value 94.771009
iter 20 value 88.841727
iter 30 value 83.695897
iter 40 value 81.968751
iter 50 value 81.763516
iter 60 value 81.667104
iter 70 value 81.636850
iter 80 value 81.630157
iter 90 value 81.598068
iter 100 value 81.550678
final value 81.550678
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.956523
iter 10 value 94.235960
iter 20 value 90.019645
iter 30 value 86.180967
iter 40 value 85.912218
iter 50 value 85.025106
iter 60 value 83.652990
iter 70 value 82.808868
iter 80 value 82.193774
iter 90 value 81.666123
iter 100 value 81.497140
final value 81.497140
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.905035
final value 94.355822
converged
Fitting Repeat 2
# weights: 103
initial value 98.001445
iter 10 value 91.115848
iter 20 value 87.336773
iter 30 value 87.325835
iter 40 value 86.737024
iter 50 value 85.122293
iter 60 value 84.413575
iter 70 value 84.402911
iter 80 value 84.398039
iter 90 value 84.395111
final value 84.395105
converged
Fitting Repeat 3
# weights: 103
initial value 106.812598
iter 10 value 94.277194
iter 20 value 94.275807
iter 30 value 94.062931
iter 40 value 94.049646
final value 94.049609
converged
Fitting Repeat 4
# weights: 103
initial value 99.156242
final value 94.485655
converged
Fitting Repeat 5
# weights: 103
initial value 96.994040
iter 10 value 94.486143
iter 20 value 94.484227
final value 94.484215
converged
Fitting Repeat 1
# weights: 305
initial value 106.047662
iter 10 value 93.710014
iter 20 value 93.708248
iter 30 value 93.704982
iter 40 value 91.887138
iter 50 value 84.720117
iter 60 value 83.924938
iter 70 value 83.266978
iter 80 value 83.238591
iter 90 value 82.525565
iter 100 value 81.303396
final value 81.303396
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.620604
iter 10 value 94.488945
iter 20 value 94.484415
iter 30 value 94.077607
iter 40 value 86.322727
iter 50 value 86.101528
iter 60 value 86.094495
iter 70 value 86.076259
final value 86.075303
converged
Fitting Repeat 3
# weights: 305
initial value 99.648593
iter 10 value 94.488937
iter 20 value 94.288390
final value 94.275561
converged
Fitting Repeat 4
# weights: 305
initial value 100.532708
iter 10 value 94.073955
iter 20 value 94.057360
iter 30 value 94.054245
iter 40 value 94.052748
final value 94.052746
converged
Fitting Repeat 5
# weights: 305
initial value 96.509739
iter 10 value 94.488660
iter 20 value 94.391725
final value 93.835047
converged
Fitting Repeat 1
# weights: 507
initial value 98.161104
iter 10 value 90.520716
iter 20 value 87.038301
iter 30 value 85.527861
iter 40 value 85.306258
iter 50 value 85.288423
iter 60 value 85.061855
iter 70 value 85.004030
iter 80 value 84.972230
iter 90 value 82.850761
iter 100 value 82.477089
final value 82.477089
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.714506
iter 10 value 94.282051
iter 20 value 94.277639
iter 30 value 94.276203
iter 40 value 94.246144
iter 50 value 85.428842
iter 60 value 85.021155
final value 85.019288
converged
Fitting Repeat 3
# weights: 507
initial value 102.213240
iter 10 value 90.783236
iter 20 value 87.733485
iter 30 value 85.609533
iter 40 value 84.154774
iter 50 value 83.744559
iter 60 value 83.736932
final value 83.735586
converged
Fitting Repeat 4
# weights: 507
initial value 98.188562
iter 10 value 94.491649
iter 20 value 94.289045
iter 30 value 94.276563
iter 40 value 94.213873
iter 50 value 87.385837
iter 60 value 87.238146
iter 70 value 87.237728
iter 80 value 86.920125
iter 90 value 86.919637
iter 100 value 86.906192
final value 86.906192
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.389698
iter 10 value 94.512373
iter 20 value 94.503881
iter 30 value 87.939178
iter 40 value 87.372914
iter 50 value 86.920045
iter 60 value 86.748160
iter 70 value 83.485982
iter 80 value 83.412602
iter 90 value 83.395976
iter 100 value 81.987893
final value 81.987893
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.875363
iter 10 value 87.080207
iter 20 value 86.622075
iter 30 value 86.618367
final value 86.618336
converged
Fitting Repeat 2
# weights: 103
initial value 94.086714
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 98.152079
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.817160
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 119.578642
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 100.389770
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 98.568244
final value 94.050155
converged
Fitting Repeat 3
# weights: 305
initial value 103.651502
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 105.785189
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 105.821145
iter 10 value 92.943920
iter 20 value 88.337110
iter 30 value 88.336263
final value 88.336206
converged
Fitting Repeat 1
# weights: 507
initial value 97.676544
iter 10 value 94.009990
final value 94.009967
converged
Fitting Repeat 2
# weights: 507
initial value 103.978034
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 109.281583
iter 10 value 92.007912
iter 20 value 87.727148
iter 30 value 86.023867
final value 86.023447
converged
Fitting Repeat 4
# weights: 507
initial value 104.300416
iter 10 value 92.825147
iter 20 value 92.359216
final value 92.085795
converged
Fitting Repeat 5
# weights: 507
initial value 102.517440
iter 10 value 91.294465
iter 20 value 90.864919
final value 90.864664
converged
Fitting Repeat 1
# weights: 103
initial value 101.053346
iter 10 value 94.036761
iter 20 value 92.289313
iter 30 value 88.170097
iter 40 value 85.922422
iter 50 value 84.956610
iter 60 value 84.281876
iter 70 value 83.778267
iter 80 value 83.726864
final value 83.726858
converged
Fitting Repeat 2
# weights: 103
initial value 107.429278
iter 10 value 94.062869
iter 20 value 93.614775
iter 30 value 93.088146
iter 40 value 88.563004
iter 50 value 88.399743
iter 60 value 88.280914
iter 70 value 86.461049
iter 80 value 86.197827
iter 90 value 86.073448
iter 100 value 86.048378
final value 86.048378
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.423973
iter 10 value 93.924346
iter 20 value 85.993931
iter 30 value 85.546868
iter 40 value 85.284152
iter 50 value 84.564759
iter 60 value 84.145398
iter 70 value 83.894948
final value 83.894872
converged
Fitting Repeat 4
# weights: 103
initial value 103.435974
iter 10 value 94.059768
iter 20 value 93.005006
iter 30 value 89.555795
iter 40 value 87.410301
iter 50 value 86.048445
iter 60 value 85.055177
iter 70 value 84.625759
final value 84.624380
converged
Fitting Repeat 5
# weights: 103
initial value 99.781195
iter 10 value 93.986357
iter 20 value 88.348670
iter 30 value 85.660973
iter 40 value 85.188495
iter 50 value 84.270225
iter 60 value 83.896841
iter 70 value 83.894183
iter 80 value 83.775091
iter 90 value 83.727165
final value 83.726857
converged
Fitting Repeat 1
# weights: 305
initial value 113.011524
iter 10 value 94.619338
iter 20 value 94.039450
iter 30 value 86.937757
iter 40 value 85.526911
iter 50 value 84.727933
iter 60 value 83.552431
iter 70 value 82.825961
iter 80 value 82.743834
iter 90 value 82.577990
iter 100 value 82.498425
final value 82.498425
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.527502
iter 10 value 94.022902
iter 20 value 92.696078
iter 30 value 87.935957
iter 40 value 84.733338
iter 50 value 83.389633
iter 60 value 82.961087
iter 70 value 82.719722
iter 80 value 81.877515
iter 90 value 81.680110
iter 100 value 81.536432
final value 81.536432
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.577238
iter 10 value 94.024735
iter 20 value 93.746938
iter 30 value 91.782377
iter 40 value 89.458400
iter 50 value 86.502936
iter 60 value 86.351800
iter 70 value 86.334118
iter 80 value 86.314503
iter 90 value 86.241814
iter 100 value 85.229602
final value 85.229602
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.559432
iter 10 value 94.093751
iter 20 value 88.833168
iter 30 value 86.713243
iter 40 value 86.406956
iter 50 value 86.297655
iter 60 value 86.277572
iter 70 value 86.256788
iter 80 value 85.908235
iter 90 value 84.570848
iter 100 value 83.591630
final value 83.591630
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.069287
iter 10 value 94.129672
iter 20 value 93.910733
iter 30 value 91.942234
iter 40 value 86.669664
iter 50 value 85.598887
iter 60 value 85.229318
iter 70 value 84.789899
iter 80 value 84.048686
iter 90 value 83.118317
iter 100 value 81.499557
final value 81.499557
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 129.924980
iter 10 value 95.783844
iter 20 value 95.568082
iter 30 value 88.220223
iter 40 value 86.336924
iter 50 value 85.577908
iter 60 value 85.003279
iter 70 value 83.978904
iter 80 value 82.991812
iter 90 value 82.723452
iter 100 value 82.600775
final value 82.600775
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.371885
iter 10 value 94.030240
iter 20 value 92.057232
iter 30 value 89.935308
iter 40 value 87.251301
iter 50 value 86.004207
iter 60 value 84.659487
iter 70 value 84.229123
iter 80 value 84.101616
iter 90 value 83.653000
iter 100 value 83.314432
final value 83.314432
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.249211
iter 10 value 92.943908
iter 20 value 90.724991
iter 30 value 89.311140
iter 40 value 86.678917
iter 50 value 85.921468
iter 60 value 83.508230
iter 70 value 82.516220
iter 80 value 82.140354
iter 90 value 81.838170
iter 100 value 81.648321
final value 81.648321
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.523192
iter 10 value 93.025087
iter 20 value 87.450796
iter 30 value 86.334723
iter 40 value 84.595995
iter 50 value 83.189118
iter 60 value 82.326939
iter 70 value 82.006842
iter 80 value 81.889966
iter 90 value 81.667780
iter 100 value 81.455666
final value 81.455666
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.823314
iter 10 value 98.134617
iter 20 value 95.550117
iter 30 value 94.701742
iter 40 value 94.219910
iter 50 value 92.453373
iter 60 value 88.257414
iter 70 value 83.994105
iter 80 value 83.676444
iter 90 value 83.303637
iter 100 value 82.243756
final value 82.243756
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.967970
iter 10 value 93.837681
iter 20 value 93.836959
iter 30 value 93.821177
iter 40 value 93.811391
final value 93.811357
converged
Fitting Repeat 2
# weights: 103
initial value 99.161969
iter 10 value 94.034996
iter 20 value 94.034467
final value 94.033076
converged
Fitting Repeat 3
# weights: 103
initial value 97.298339
final value 94.054368
converged
Fitting Repeat 4
# weights: 103
initial value 102.918532
final value 94.054311
converged
Fitting Repeat 5
# weights: 103
initial value 100.823507
final value 94.054629
converged
Fitting Repeat 1
# weights: 305
initial value 96.813653
iter 10 value 94.037720
iter 20 value 94.033823
iter 30 value 93.960876
iter 40 value 89.361856
iter 50 value 86.298861
iter 60 value 85.983125
iter 70 value 85.928494
iter 80 value 85.916023
iter 90 value 85.854356
iter 100 value 83.976333
final value 83.976333
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.233524
iter 10 value 94.057734
iter 20 value 90.584889
iter 30 value 90.366881
iter 40 value 90.361913
iter 50 value 90.351307
iter 60 value 89.021918
iter 70 value 84.768437
iter 80 value 82.121740
iter 90 value 81.714095
iter 100 value 81.703709
final value 81.703709
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 95.473675
iter 10 value 91.441446
iter 20 value 91.438089
iter 30 value 91.426338
iter 40 value 90.529149
final value 90.498445
converged
Fitting Repeat 4
# weights: 305
initial value 105.199132
iter 10 value 94.056844
iter 20 value 86.954865
iter 30 value 86.445989
iter 40 value 85.830789
iter 50 value 84.682596
iter 60 value 81.858078
iter 70 value 81.840149
iter 80 value 81.824182
iter 90 value 81.694718
iter 100 value 81.621095
final value 81.621095
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 120.288618
iter 10 value 94.058039
iter 20 value 94.053202
iter 30 value 87.491230
iter 40 value 87.233789
iter 50 value 87.232783
iter 60 value 87.229721
final value 87.229332
converged
Fitting Repeat 1
# weights: 507
initial value 94.116277
iter 10 value 94.040271
iter 20 value 94.033039
iter 30 value 92.384466
iter 40 value 88.405375
iter 50 value 88.163717
iter 60 value 85.550735
iter 70 value 85.381423
iter 80 value 85.379450
iter 90 value 85.335170
iter 100 value 85.182642
final value 85.182642
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.294680
iter 10 value 94.060782
iter 20 value 94.005441
iter 30 value 93.334858
iter 40 value 93.333500
final value 93.333478
converged
Fitting Repeat 3
# weights: 507
initial value 94.056884
iter 10 value 92.892881
iter 20 value 90.811719
iter 30 value 87.547250
iter 40 value 85.617583
iter 50 value 85.112780
iter 60 value 84.212978
iter 70 value 83.633423
iter 80 value 83.457637
iter 90 value 83.409950
final value 83.409608
converged
Fitting Repeat 4
# weights: 507
initial value 106.517994
iter 10 value 94.041150
iter 20 value 94.033158
iter 30 value 93.911361
iter 40 value 92.347516
iter 50 value 92.034455
iter 60 value 91.958133
iter 70 value 87.038945
iter 80 value 87.024831
iter 90 value 87.019405
iter 100 value 87.014878
final value 87.014878
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 95.395194
iter 10 value 94.023389
iter 20 value 93.733769
iter 30 value 92.217917
iter 40 value 92.202393
iter 50 value 92.098678
iter 60 value 90.915025
iter 70 value 90.500160
iter 80 value 90.498723
final value 90.498685
converged
Fitting Repeat 1
# weights: 103
initial value 100.599279
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.676424
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.304145
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 106.265514
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.127981
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.347694
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 104.367197
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.507177
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 110.803741
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 105.031096
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 97.082997
iter 10 value 93.555988
iter 20 value 90.105480
iter 30 value 89.874056
iter 40 value 89.870290
final value 89.870271
converged
Fitting Repeat 2
# weights: 507
initial value 109.027181
iter 10 value 93.751993
final value 93.720301
converged
Fitting Repeat 3
# weights: 507
initial value 117.753223
iter 10 value 93.777020
final value 93.746369
converged
Fitting Repeat 4
# weights: 507
initial value 97.543411
final value 93.772974
converged
Fitting Repeat 5
# weights: 507
initial value 96.795131
iter 10 value 93.918868
final value 93.911201
converged
Fitting Repeat 1
# weights: 103
initial value 96.105865
iter 10 value 90.808498
iter 20 value 84.994288
iter 30 value 82.992143
iter 40 value 81.766233
iter 50 value 81.382741
final value 81.381535
converged
Fitting Repeat 2
# weights: 103
initial value 99.247955
iter 10 value 94.495848
iter 20 value 92.355979
iter 30 value 87.295855
iter 40 value 86.470871
iter 50 value 85.370885
iter 60 value 82.653025
iter 70 value 82.439474
iter 80 value 82.360364
iter 90 value 82.218103
iter 100 value 81.779350
final value 81.779350
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 102.202643
iter 10 value 94.440132
iter 20 value 94.110918
iter 30 value 91.887725
iter 40 value 90.180749
iter 50 value 89.985171
iter 60 value 86.489652
iter 70 value 84.674309
iter 80 value 84.548167
iter 90 value 84.482616
final value 84.478553
converged
Fitting Repeat 4
# weights: 103
initial value 104.826616
iter 10 value 94.040897
iter 20 value 91.856681
iter 30 value 86.758366
iter 40 value 85.889842
iter 50 value 85.472915
iter 60 value 85.155943
iter 70 value 85.042025
iter 80 value 84.980331
final value 84.980328
converged
Fitting Repeat 5
# weights: 103
initial value 99.289363
iter 10 value 94.407368
iter 20 value 94.125121
iter 30 value 93.915295
iter 40 value 85.884497
iter 50 value 85.569883
iter 60 value 85.521154
iter 70 value 85.497427
iter 80 value 85.435493
iter 90 value 84.909635
iter 100 value 84.514395
final value 84.514395
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 107.105769
iter 10 value 93.768263
iter 20 value 92.051601
iter 30 value 91.131732
iter 40 value 90.963868
iter 50 value 87.687583
iter 60 value 85.034067
iter 70 value 83.846927
iter 80 value 82.997043
iter 90 value 82.518775
iter 100 value 81.058856
final value 81.058856
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.847957
iter 10 value 94.487476
iter 20 value 93.979275
iter 30 value 92.999422
iter 40 value 89.176179
iter 50 value 85.924935
iter 60 value 84.772549
iter 70 value 83.023561
iter 80 value 81.800394
iter 90 value 81.404191
iter 100 value 80.951979
final value 80.951979
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 107.444851
iter 10 value 94.458885
iter 20 value 93.162569
iter 30 value 85.379629
iter 40 value 83.883564
iter 50 value 83.717755
iter 60 value 83.505422
iter 70 value 82.927753
iter 80 value 82.274929
iter 90 value 81.082354
iter 100 value 80.739445
final value 80.739445
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.875118
iter 10 value 94.045843
iter 20 value 86.987652
iter 30 value 84.600111
iter 40 value 83.212696
iter 50 value 82.435749
iter 60 value 81.958156
iter 70 value 81.780851
iter 80 value 81.699296
iter 90 value 81.570187
iter 100 value 81.477945
final value 81.477945
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 124.232824
iter 10 value 94.864398
iter 20 value 90.777562
iter 30 value 87.216286
iter 40 value 86.366021
iter 50 value 84.751142
iter 60 value 83.998022
iter 70 value 83.219695
iter 80 value 82.751001
iter 90 value 82.569304
iter 100 value 82.038344
final value 82.038344
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.483069
iter 10 value 93.984750
iter 20 value 90.541356
iter 30 value 87.279273
iter 40 value 84.767432
iter 50 value 83.231922
iter 60 value 82.391801
iter 70 value 81.750770
iter 80 value 81.133167
iter 90 value 80.986075
iter 100 value 80.714629
final value 80.714629
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 137.766760
iter 10 value 91.919512
iter 20 value 90.023182
iter 30 value 87.064029
iter 40 value 84.705936
iter 50 value 83.426579
iter 60 value 81.863905
iter 70 value 81.558847
iter 80 value 80.505391
iter 90 value 80.223090
iter 100 value 80.128037
final value 80.128037
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.247038
iter 10 value 94.612441
iter 20 value 88.549540
iter 30 value 87.609953
iter 40 value 86.839876
iter 50 value 83.293618
iter 60 value 81.034308
iter 70 value 80.813116
iter 80 value 80.624013
iter 90 value 80.438032
iter 100 value 80.032351
final value 80.032351
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.394584
iter 10 value 94.527472
iter 20 value 91.954682
iter 30 value 86.146570
iter 40 value 84.026630
iter 50 value 82.541001
iter 60 value 82.012367
iter 70 value 81.926754
iter 80 value 81.618112
iter 90 value 81.099583
iter 100 value 80.494255
final value 80.494255
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.578841
iter 10 value 94.890724
iter 20 value 89.405419
iter 30 value 85.241776
iter 40 value 84.713751
iter 50 value 84.301003
iter 60 value 83.813669
iter 70 value 82.335892
iter 80 value 81.953466
iter 90 value 81.855871
iter 100 value 81.748495
final value 81.748495
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.134683
final value 94.485873
converged
Fitting Repeat 2
# weights: 103
initial value 98.474586
iter 10 value 94.485647
iter 20 value 93.172818
iter 30 value 86.841858
iter 40 value 85.670212
iter 50 value 85.212541
final value 85.211922
converged
Fitting Repeat 3
# weights: 103
initial value 102.647240
iter 10 value 93.775012
iter 20 value 93.773993
iter 30 value 93.759473
iter 40 value 92.979399
final value 88.240912
converged
Fitting Repeat 4
# weights: 103
initial value 96.692059
final value 94.485990
converged
Fitting Repeat 5
# weights: 103
initial value 95.511428
final value 94.486035
converged
Fitting Repeat 1
# weights: 305
initial value 105.923662
iter 10 value 93.028125
iter 20 value 90.080852
iter 30 value 89.952694
final value 89.873245
converged
Fitting Repeat 2
# weights: 305
initial value 100.365966
iter 10 value 94.488782
iter 20 value 94.484051
iter 30 value 93.814884
iter 40 value 85.906042
iter 50 value 83.482144
iter 60 value 83.230238
iter 70 value 83.218839
final value 83.218463
converged
Fitting Repeat 3
# weights: 305
initial value 102.369422
iter 10 value 94.457491
iter 20 value 94.452000
iter 30 value 94.450686
iter 40 value 94.448069
iter 50 value 87.101806
iter 60 value 86.152608
iter 70 value 86.150958
iter 80 value 86.023005
iter 90 value 85.988187
iter 100 value 85.988047
final value 85.988047
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 124.023480
iter 10 value 94.489338
iter 20 value 94.467523
iter 30 value 93.934930
final value 93.774009
converged
Fitting Repeat 5
# weights: 305
initial value 102.023722
iter 10 value 94.489248
iter 20 value 94.212078
iter 30 value 92.020520
iter 40 value 89.804453
iter 50 value 89.778294
iter 60 value 89.751878
iter 70 value 89.590747
iter 80 value 87.648595
iter 90 value 85.729849
iter 100 value 85.587522
final value 85.587522
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.415409
iter 10 value 93.040922
iter 20 value 93.036616
iter 30 value 92.882231
iter 40 value 89.891847
iter 50 value 89.332213
iter 60 value 89.076542
iter 70 value 89.076187
iter 80 value 89.076033
final value 89.075977
converged
Fitting Repeat 2
# weights: 507
initial value 112.276072
iter 10 value 93.728925
iter 20 value 93.726053
iter 30 value 93.723600
iter 40 value 93.723242
iter 50 value 93.720967
iter 60 value 93.620787
iter 70 value 86.978320
iter 80 value 85.599947
iter 90 value 85.594920
final value 85.594900
converged
Fitting Repeat 3
# weights: 507
initial value 106.510291
iter 10 value 94.492660
iter 20 value 93.057606
iter 30 value 85.903474
iter 40 value 85.659547
iter 50 value 85.653965
iter 60 value 85.653007
final value 85.652482
converged
Fitting Repeat 4
# weights: 507
initial value 118.215135
iter 10 value 93.433336
iter 20 value 92.125244
iter 30 value 91.720300
iter 40 value 91.711586
iter 50 value 91.694900
iter 60 value 91.675275
iter 70 value 91.664328
iter 80 value 89.876864
iter 90 value 89.143167
iter 100 value 89.110026
final value 89.110026
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.804500
iter 10 value 94.491493
iter 20 value 94.339797
iter 30 value 89.898812
iter 40 value 89.849214
iter 50 value 89.383504
iter 60 value 89.140620
final value 89.139858
converged
Fitting Repeat 1
# weights: 305
initial value 135.903104
iter 10 value 117.870646
iter 20 value 117.690564
iter 30 value 114.829823
final value 114.740920
converged
Fitting Repeat 2
# weights: 305
initial value 121.057219
iter 10 value 117.735656
iter 20 value 115.663227
iter 30 value 106.943595
iter 40 value 106.921394
iter 50 value 106.789322
iter 60 value 106.355994
iter 70 value 106.152619
iter 80 value 106.121402
iter 90 value 106.121012
iter 100 value 105.455432
final value 105.455432
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 119.037347
iter 10 value 117.763733
iter 20 value 117.758993
iter 30 value 117.758788
final value 117.758782
converged
Fitting Repeat 4
# weights: 305
initial value 127.045695
iter 10 value 117.892889
final value 117.890304
converged
Fitting Repeat 5
# weights: 305
initial value 133.755968
iter 10 value 117.895193
iter 20 value 117.851732
iter 30 value 116.175396
iter 40 value 114.761261
iter 50 value 111.858086
iter 60 value 109.067041
iter 70 value 107.765477
final value 107.765350
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Thu May 21 20:02:52 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
19.797 0.645 74.282
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 16.897 | 0.065 | 17.217 | |
| FreqInteractors | 0.155 | 0.006 | 0.161 | |
| calculateAAC | 0.013 | 0.001 | 0.014 | |
| calculateAutocor | 0.119 | 0.006 | 0.125 | |
| calculateCTDC | 0.025 | 0.000 | 0.026 | |
| calculateCTDD | 0.158 | 0.013 | 0.171 | |
| calculateCTDT | 0.052 | 0.004 | 0.056 | |
| calculateCTriad | 0.144 | 0.005 | 0.149 | |
| calculateDC | 0.030 | 0.003 | 0.033 | |
| calculateF | 0.091 | 0.001 | 0.093 | |
| calculateKSAAP | 0.032 | 0.002 | 0.034 | |
| calculateQD_Sm | 0.635 | 0.027 | 0.662 | |
| calculateTC | 0.586 | 0.045 | 0.633 | |
| calculateTC_Sm | 0.096 | 0.004 | 0.101 | |
| corr_plot | 16.941 | 0.088 | 17.181 | |
| enrichfindP | 0.197 | 0.032 | 9.808 | |
| enrichfind_hp | 0.016 | 0.002 | 1.051 | |
| enrichplot | 0.167 | 0.002 | 0.170 | |
| filter_missing_values | 0.000 | 0.000 | 0.001 | |
| getFASTA | 0.031 | 0.007 | 3.870 | |
| getHPI | 0 | 0 | 0 | |
| get_negativePPI | 0.001 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0 | 0 | 0 | |
| plotPPI | 0.029 | 0.001 | 0.031 | |
| pred_ensembel | 6.039 | 0.107 | 5.438 | |
| var_imp | 16.813 | 0.079 | 16.905 | |