| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-22 11:35 -0400 (Wed, 22 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4738 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4701 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1023/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-04-21 20:16:48 -0400 (Tue, 21 Apr 2026) |
| EndedAt: 2026-04-21 20:20:11 -0400 (Tue, 21 Apr 2026) |
| EllapsedTime: 203.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 alpha (2026-04-08 r89818)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-22 00:16:48 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 17.219 0.097 17.423
corr_plot 17.183 0.102 17.375
var_imp 17.063 0.154 17.418
pred_ensembel 6.429 0.165 5.837
enrichfindP 0.202 0.040 10.289
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 alpha (2026-04-08 r89818)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 97.014906
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 99.469555
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 100.297445
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 106.783418
final value 94.323810
converged
Fitting Repeat 5
# weights: 103
initial value 95.271172
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.950493
final value 94.275362
converged
Fitting Repeat 2
# weights: 305
initial value 101.310473
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 103.762076
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 102.893220
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.094883
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 96.711044
final value 94.275362
converged
Fitting Repeat 2
# weights: 507
initial value 99.496105
iter 10 value 94.083971
final value 94.083671
converged
Fitting Repeat 3
# weights: 507
initial value 119.566811
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 100.618713
iter 10 value 94.276413
final value 94.275362
converged
Fitting Repeat 5
# weights: 507
initial value 95.231794
iter 10 value 86.768798
iter 20 value 86.713190
final value 86.713176
converged
Fitting Repeat 1
# weights: 103
initial value 96.770317
iter 10 value 94.407194
iter 20 value 91.737045
iter 30 value 91.560702
iter 40 value 85.495008
iter 50 value 82.958176
iter 60 value 82.447964
iter 70 value 82.021862
iter 80 value 81.723821
final value 81.723748
converged
Fitting Repeat 2
# weights: 103
initial value 98.364049
iter 10 value 94.488840
iter 20 value 92.343041
iter 30 value 86.736918
iter 40 value 86.503166
iter 50 value 86.092832
iter 60 value 85.674400
iter 70 value 85.154636
iter 80 value 84.684332
iter 90 value 84.525787
final value 84.525782
converged
Fitting Repeat 3
# weights: 103
initial value 106.240109
iter 10 value 94.501383
iter 20 value 94.198358
iter 30 value 87.622707
iter 40 value 87.170293
iter 50 value 87.056867
iter 60 value 84.128263
iter 70 value 83.933489
iter 80 value 83.904333
iter 90 value 83.851612
final value 83.848849
converged
Fitting Repeat 4
# weights: 103
initial value 104.298309
iter 10 value 94.491420
iter 20 value 94.100069
iter 30 value 91.237026
iter 40 value 90.872365
iter 50 value 90.837874
iter 60 value 90.810320
iter 70 value 83.316957
iter 80 value 81.802814
iter 90 value 81.598403
final value 81.577963
converged
Fitting Repeat 5
# weights: 103
initial value 102.470019
iter 10 value 95.019865
iter 20 value 94.471354
iter 30 value 89.762037
iter 40 value 84.074076
iter 50 value 82.973140
iter 60 value 82.143338
iter 70 value 81.716747
iter 80 value 81.644809
final value 81.577962
converged
Fitting Repeat 1
# weights: 305
initial value 102.164993
iter 10 value 94.619197
iter 20 value 93.859558
iter 30 value 90.813589
iter 40 value 89.169097
iter 50 value 88.918922
iter 60 value 85.169192
iter 70 value 83.600930
iter 80 value 83.553740
iter 90 value 83.267099
iter 100 value 81.255995
final value 81.255995
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 123.469387
iter 10 value 94.593922
iter 20 value 94.292249
iter 30 value 91.331216
iter 40 value 89.183744
iter 50 value 86.281232
iter 60 value 82.846969
iter 70 value 81.643266
iter 80 value 81.270499
iter 90 value 80.959630
iter 100 value 80.474395
final value 80.474395
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.653773
iter 10 value 94.432910
iter 20 value 93.988913
iter 30 value 84.041713
iter 40 value 83.898236
iter 50 value 83.697920
iter 60 value 83.590981
iter 70 value 83.577355
iter 80 value 83.524955
iter 90 value 82.865375
iter 100 value 81.735189
final value 81.735189
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.074779
iter 10 value 94.505257
iter 20 value 94.237480
iter 30 value 94.123802
iter 40 value 85.069293
iter 50 value 84.867973
iter 60 value 84.204857
iter 70 value 83.859113
iter 80 value 83.802506
iter 90 value 83.656999
iter 100 value 83.529365
final value 83.529365
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.065944
iter 10 value 94.458980
iter 20 value 93.420262
iter 30 value 84.500256
iter 40 value 83.313127
iter 50 value 83.042975
iter 60 value 82.302850
iter 70 value 82.019113
iter 80 value 81.985344
iter 90 value 81.819059
iter 100 value 81.818421
final value 81.818421
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.096622
iter 10 value 94.080723
iter 20 value 85.727888
iter 30 value 84.851226
iter 40 value 84.336926
iter 50 value 83.663333
iter 60 value 81.663394
iter 70 value 80.656820
iter 80 value 79.872940
iter 90 value 79.488098
iter 100 value 79.423513
final value 79.423513
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 115.718426
iter 10 value 95.371245
iter 20 value 94.479435
iter 30 value 92.781976
iter 40 value 91.316994
iter 50 value 83.422041
iter 60 value 83.144904
iter 70 value 82.942814
iter 80 value 82.577177
iter 90 value 82.125769
iter 100 value 81.791592
final value 81.791592
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.260920
iter 10 value 94.581443
iter 20 value 93.433077
iter 30 value 89.547186
iter 40 value 84.131816
iter 50 value 83.340193
iter 60 value 82.951540
iter 70 value 82.493025
iter 80 value 81.621434
iter 90 value 81.241911
iter 100 value 80.777333
final value 80.777333
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 120.618947
iter 10 value 94.448452
iter 20 value 93.266388
iter 30 value 89.567979
iter 40 value 87.071537
iter 50 value 84.208048
iter 60 value 83.678227
iter 70 value 83.176758
iter 80 value 82.853803
iter 90 value 82.748886
iter 100 value 82.704912
final value 82.704912
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.196851
iter 10 value 94.923900
iter 20 value 93.727798
iter 30 value 85.113029
iter 40 value 84.192230
iter 50 value 83.738957
iter 60 value 83.146023
iter 70 value 81.361417
iter 80 value 81.091726
iter 90 value 80.937740
iter 100 value 80.587500
final value 80.587500
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.714374
iter 10 value 94.485889
iter 20 value 94.484041
iter 30 value 94.057691
final value 94.057666
converged
Fitting Repeat 2
# weights: 103
initial value 98.701675
final value 94.485908
converged
Fitting Repeat 3
# weights: 103
initial value 94.673687
final value 94.485913
converged
Fitting Repeat 4
# weights: 103
initial value 102.723134
final value 93.703280
converged
Fitting Repeat 5
# weights: 103
initial value 109.619331
final value 94.485740
converged
Fitting Repeat 1
# weights: 305
initial value 98.175444
iter 10 value 94.488801
iter 20 value 94.350325
iter 30 value 92.712259
iter 40 value 83.173432
iter 50 value 82.675159
final value 82.673705
converged
Fitting Repeat 2
# weights: 305
initial value 118.042602
iter 10 value 94.490313
iter 20 value 93.830980
iter 30 value 84.201249
iter 40 value 84.199820
iter 50 value 84.198612
final value 84.198516
converged
Fitting Repeat 3
# weights: 305
initial value 97.480107
iter 10 value 92.094443
iter 20 value 92.093459
iter 30 value 92.093048
iter 40 value 92.090991
iter 50 value 84.593254
iter 60 value 82.935323
iter 70 value 82.076369
iter 80 value 82.072124
iter 80 value 82.072124
final value 82.072124
converged
Fitting Repeat 4
# weights: 305
initial value 95.944957
iter 10 value 94.488893
iter 20 value 92.720925
iter 30 value 92.244175
iter 40 value 92.244016
iter 50 value 92.243744
final value 92.243614
converged
Fitting Repeat 5
# weights: 305
initial value 110.287460
iter 10 value 87.041790
iter 20 value 83.535265
iter 30 value 82.934799
iter 40 value 82.921203
iter 50 value 82.920108
iter 60 value 82.914601
iter 70 value 82.901983
iter 80 value 82.901721
iter 90 value 82.901602
final value 82.901586
converged
Fitting Repeat 1
# weights: 507
initial value 97.999357
iter 10 value 94.283417
iter 20 value 94.123250
iter 30 value 84.193636
iter 40 value 84.050444
iter 50 value 84.049053
iter 50 value 84.049053
final value 84.049053
converged
Fitting Repeat 2
# weights: 507
initial value 102.611863
iter 10 value 94.486957
iter 20 value 93.204171
iter 30 value 85.981847
iter 40 value 84.092823
final value 83.972313
converged
Fitting Repeat 3
# weights: 507
initial value 115.535704
iter 10 value 94.000179
iter 20 value 93.493788
iter 30 value 89.044351
iter 40 value 87.612205
iter 50 value 87.453017
iter 60 value 87.364739
iter 70 value 87.360879
iter 80 value 85.931080
iter 90 value 83.786642
iter 100 value 83.097840
final value 83.097840
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.407751
iter 10 value 94.283282
iter 20 value 94.273205
iter 30 value 93.472873
iter 40 value 86.621849
iter 50 value 85.354516
iter 50 value 85.354515
iter 50 value 85.354515
final value 85.354515
converged
Fitting Repeat 5
# weights: 507
initial value 101.579946
iter 10 value 94.492245
iter 20 value 94.350160
iter 30 value 84.235109
iter 40 value 84.206104
iter 50 value 84.185812
iter 60 value 83.931213
iter 70 value 80.000118
iter 80 value 79.519001
iter 90 value 79.452552
iter 100 value 79.450015
final value 79.450015
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.760269
iter 10 value 94.185036
iter 20 value 94.088893
final value 94.088890
converged
Fitting Repeat 2
# weights: 103
initial value 102.036223
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 100.010376
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.706482
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 99.889073
final value 94.484137
converged
Fitting Repeat 1
# weights: 305
initial value 95.108723
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 98.623147
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.966460
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 114.435309
iter 10 value 87.875211
iter 20 value 87.592036
iter 30 value 85.979124
iter 40 value 85.783444
iter 50 value 85.782042
final value 85.782038
converged
Fitting Repeat 5
# weights: 305
initial value 95.703198
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 119.073308
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 113.119397
iter 10 value 94.026542
iter 10 value 94.026542
iter 10 value 94.026542
final value 94.026542
converged
Fitting Repeat 3
# weights: 507
initial value 126.640920
final value 94.026542
converged
Fitting Repeat 4
# weights: 507
initial value 98.046647
iter 10 value 93.971215
iter 20 value 86.278350
iter 30 value 83.706503
iter 40 value 81.461055
iter 50 value 80.266982
iter 60 value 79.713912
iter 70 value 79.709731
iter 80 value 79.668869
iter 90 value 79.565520
iter 100 value 79.555050
final value 79.555050
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.749569
final value 94.026542
converged
Fitting Repeat 1
# weights: 103
initial value 100.829441
iter 10 value 94.489013
iter 20 value 94.396071
iter 30 value 93.001741
iter 40 value 92.069462
iter 50 value 91.543265
iter 60 value 87.684724
iter 70 value 87.300830
iter 80 value 87.138064
iter 90 value 86.798000
iter 100 value 86.293582
final value 86.293582
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.125254
iter 10 value 94.223291
iter 20 value 93.527305
iter 30 value 88.000828
iter 40 value 87.652986
iter 50 value 87.022491
iter 60 value 86.803298
iter 70 value 84.996237
iter 80 value 83.852947
iter 90 value 83.830419
iter 100 value 83.128421
final value 83.128421
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.960856
iter 10 value 94.490986
iter 20 value 94.472444
iter 30 value 94.110661
iter 40 value 94.088873
iter 50 value 94.080537
final value 94.077872
converged
Fitting Repeat 4
# weights: 103
initial value 105.135856
iter 10 value 94.488762
iter 20 value 94.442105
iter 30 value 94.247109
iter 40 value 94.228055
iter 50 value 92.147968
iter 60 value 84.453075
iter 70 value 83.922742
iter 80 value 83.871470
iter 90 value 82.983974
iter 100 value 82.524232
final value 82.524232
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 103.362139
iter 10 value 94.490679
iter 20 value 94.359002
iter 30 value 94.215826
iter 40 value 94.212022
iter 50 value 94.072448
iter 60 value 87.502169
iter 70 value 86.532209
iter 80 value 83.261532
iter 90 value 82.411527
iter 100 value 81.950062
final value 81.950062
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 114.821511
iter 10 value 92.287063
iter 20 value 83.554265
iter 30 value 81.684739
iter 40 value 80.630017
iter 50 value 79.813404
iter 60 value 79.798257
iter 70 value 79.676648
iter 80 value 79.167011
iter 90 value 78.989634
iter 100 value 78.895328
final value 78.895328
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.548117
iter 10 value 95.384119
iter 20 value 94.288197
iter 30 value 90.403507
iter 40 value 84.885486
iter 50 value 84.296297
iter 60 value 83.566807
iter 70 value 83.145249
iter 80 value 80.620456
iter 90 value 79.852970
iter 100 value 78.929254
final value 78.929254
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.069252
iter 10 value 94.509708
iter 20 value 94.223471
iter 30 value 92.382225
iter 40 value 89.517248
iter 50 value 85.255133
iter 60 value 82.980932
iter 70 value 82.483973
iter 80 value 81.982647
iter 90 value 79.783429
iter 100 value 79.009404
final value 79.009404
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 115.663345
iter 10 value 94.401819
iter 20 value 93.800974
iter 30 value 92.152029
iter 40 value 91.216441
iter 50 value 88.023420
iter 60 value 84.120465
iter 70 value 82.470761
iter 80 value 81.067553
iter 90 value 80.067004
iter 100 value 79.798164
final value 79.798164
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.414419
iter 10 value 94.560326
iter 20 value 94.250352
iter 30 value 89.891837
iter 40 value 83.230441
iter 50 value 82.084784
iter 60 value 81.400361
iter 70 value 81.232771
iter 80 value 81.110670
iter 90 value 80.106308
iter 100 value 78.778906
final value 78.778906
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 120.657811
iter 10 value 97.102856
iter 20 value 95.579543
iter 30 value 94.243706
iter 40 value 89.166700
iter 50 value 88.445130
iter 60 value 87.732900
iter 70 value 86.436470
iter 80 value 82.651044
iter 90 value 80.592044
iter 100 value 80.069612
final value 80.069612
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 137.740289
iter 10 value 94.300625
iter 20 value 85.560069
iter 30 value 84.130230
iter 40 value 84.069110
iter 50 value 83.802634
iter 60 value 82.331533
iter 70 value 79.869471
iter 80 value 79.294899
iter 90 value 79.137923
iter 100 value 79.104650
final value 79.104650
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 123.731938
iter 10 value 95.023466
iter 20 value 87.538055
iter 30 value 85.248106
iter 40 value 82.755722
iter 50 value 81.808549
iter 60 value 80.386405
iter 70 value 79.392648
iter 80 value 78.825310
iter 90 value 78.341198
iter 100 value 77.976401
final value 77.976401
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.674629
iter 10 value 94.159987
iter 20 value 92.918398
iter 30 value 90.614741
iter 40 value 88.622366
iter 50 value 87.625807
iter 60 value 82.687592
iter 70 value 82.037330
iter 80 value 81.919440
iter 90 value 81.655460
iter 100 value 79.899585
final value 79.899585
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.974610
iter 10 value 94.532050
iter 20 value 93.140724
iter 30 value 86.730188
iter 40 value 83.823687
iter 50 value 82.153086
iter 60 value 79.754632
iter 70 value 79.279041
iter 80 value 79.125955
iter 90 value 78.983823
iter 100 value 78.684031
final value 78.684031
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.652179
final value 94.485979
converged
Fitting Repeat 2
# weights: 103
initial value 99.226458
iter 10 value 94.028452
iter 20 value 94.027279
final value 94.027080
converged
Fitting Repeat 3
# weights: 103
initial value 102.867476
final value 94.485994
converged
Fitting Repeat 4
# weights: 103
initial value 102.128269
final value 94.485971
converged
Fitting Repeat 5
# weights: 103
initial value 97.303388
final value 94.486284
converged
Fitting Repeat 1
# weights: 305
initial value 97.571046
iter 10 value 94.209707
iter 20 value 94.205143
iter 30 value 93.384835
iter 40 value 90.657858
iter 50 value 90.645464
iter 60 value 90.643202
iter 70 value 90.636286
iter 80 value 90.633167
iter 90 value 90.628402
iter 100 value 90.619546
final value 90.619546
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.765985
iter 10 value 94.488907
iter 20 value 94.337534
iter 30 value 92.769921
iter 40 value 83.834935
iter 50 value 83.441887
iter 60 value 83.260891
final value 83.260497
converged
Fitting Repeat 3
# weights: 305
initial value 96.179314
iter 10 value 93.984361
iter 20 value 93.980385
iter 30 value 88.995960
iter 40 value 86.763857
iter 50 value 85.955367
iter 60 value 85.015157
iter 70 value 84.990834
final value 84.990790
converged
Fitting Repeat 4
# weights: 305
initial value 100.505566
iter 10 value 94.489154
iter 20 value 94.438144
final value 94.027061
converged
Fitting Repeat 5
# weights: 305
initial value 100.332978
iter 10 value 94.488919
iter 20 value 94.484214
iter 30 value 94.052249
iter 40 value 93.979023
iter 50 value 89.698799
iter 60 value 82.875360
iter 70 value 82.371663
final value 82.369948
converged
Fitting Repeat 1
# weights: 507
initial value 118.241633
iter 10 value 92.693363
iter 20 value 89.066874
iter 30 value 88.450551
iter 40 value 88.435685
iter 50 value 88.433068
iter 60 value 88.431633
iter 70 value 88.429346
iter 80 value 88.428936
iter 90 value 88.156888
iter 100 value 87.023092
final value 87.023092
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.811750
iter 10 value 94.491784
iter 20 value 93.997333
iter 30 value 93.980383
iter 40 value 93.976950
iter 50 value 93.974947
iter 60 value 93.973432
final value 93.973293
converged
Fitting Repeat 3
# weights: 507
initial value 124.342778
iter 10 value 94.034478
iter 20 value 94.027264
iter 30 value 92.529089
iter 40 value 87.065612
iter 50 value 84.759560
iter 60 value 84.758133
iter 70 value 84.671470
iter 80 value 82.885778
iter 90 value 82.709214
iter 100 value 82.472596
final value 82.472596
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 92.505423
iter 10 value 85.248276
iter 20 value 84.609880
iter 30 value 84.385004
final value 84.384395
converged
Fitting Repeat 5
# weights: 507
initial value 114.730060
iter 10 value 94.035179
iter 20 value 94.028810
final value 94.025383
converged
Fitting Repeat 1
# weights: 103
initial value 101.824826
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 96.738912
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 113.566453
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.223579
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 106.203838
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 119.077031
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 103.808296
final value 93.836066
converged
Fitting Repeat 3
# weights: 305
initial value 97.599395
final value 93.836066
converged
Fitting Repeat 4
# weights: 305
initial value 110.516080
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 98.412685
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 102.980531
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 109.446113
final value 93.836066
converged
Fitting Repeat 3
# weights: 507
initial value 102.645819
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 106.165323
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 94.878678
iter 10 value 92.915735
iter 20 value 92.700778
iter 30 value 92.535649
final value 92.535641
converged
Fitting Repeat 1
# weights: 103
initial value 96.108338
iter 10 value 94.053766
iter 20 value 93.899860
iter 30 value 93.892196
iter 40 value 93.853975
iter 50 value 89.752684
iter 60 value 86.689315
iter 70 value 86.016560
iter 80 value 84.342032
iter 90 value 83.479570
iter 100 value 83.113848
final value 83.113848
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 114.592660
iter 10 value 94.032160
iter 20 value 91.234895
iter 30 value 87.036642
iter 40 value 84.054081
iter 50 value 83.496517
iter 60 value 83.298207
iter 70 value 83.256519
final value 83.250585
converged
Fitting Repeat 3
# weights: 103
initial value 98.743783
iter 10 value 94.043062
iter 20 value 93.624341
iter 30 value 91.977334
iter 40 value 86.193347
iter 50 value 83.725793
iter 60 value 83.277531
iter 70 value 83.250592
final value 83.250585
converged
Fitting Repeat 4
# weights: 103
initial value 107.369443
iter 10 value 94.056600
iter 10 value 94.056599
iter 20 value 93.971244
iter 30 value 85.172920
iter 40 value 84.296449
iter 50 value 82.754551
iter 60 value 82.438921
iter 70 value 82.396287
final value 82.395915
converged
Fitting Repeat 5
# weights: 103
initial value 109.427035
iter 10 value 94.085384
iter 20 value 94.010926
iter 30 value 92.392002
iter 40 value 91.701028
iter 50 value 85.527890
iter 60 value 81.525892
iter 70 value 81.265822
iter 80 value 80.736990
iter 90 value 80.607442
iter 100 value 80.538487
final value 80.538487
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 113.973264
iter 10 value 94.055304
iter 20 value 93.748513
iter 30 value 93.082517
iter 40 value 89.453148
iter 50 value 85.605110
iter 60 value 84.694625
iter 70 value 84.632299
iter 80 value 82.851009
iter 90 value 82.779386
iter 100 value 82.705103
final value 82.705103
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.440981
iter 10 value 94.123132
iter 20 value 93.722383
iter 30 value 92.468438
iter 40 value 85.698124
iter 50 value 84.687773
iter 60 value 83.397318
iter 70 value 83.017974
iter 80 value 82.933139
iter 90 value 82.920155
iter 100 value 82.875951
final value 82.875951
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.209647
iter 10 value 93.885568
iter 20 value 85.898584
iter 30 value 83.914848
iter 40 value 83.710056
iter 50 value 83.053121
iter 60 value 82.683823
iter 70 value 81.864124
iter 80 value 80.972665
iter 90 value 80.348948
iter 100 value 79.787768
final value 79.787768
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.561380
iter 10 value 94.086581
iter 20 value 88.095664
iter 30 value 87.399249
iter 40 value 86.780892
iter 50 value 84.655293
iter 60 value 83.601012
iter 70 value 83.239600
iter 80 value 82.995642
iter 90 value 82.547928
iter 100 value 81.151522
final value 81.151522
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 116.356515
iter 10 value 97.310965
iter 20 value 86.691399
iter 30 value 84.807170
iter 40 value 84.584671
iter 50 value 83.390232
iter 60 value 82.999194
iter 70 value 82.681463
iter 80 value 82.635371
iter 90 value 82.234862
iter 100 value 80.597285
final value 80.597285
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 127.950156
iter 10 value 93.923934
iter 20 value 87.160396
iter 30 value 83.083963
iter 40 value 80.466393
iter 50 value 79.383805
iter 60 value 79.152194
iter 70 value 79.118595
iter 80 value 79.049030
iter 90 value 78.975272
iter 100 value 78.870935
final value 78.870935
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.925150
iter 10 value 93.550451
iter 20 value 91.727280
iter 30 value 88.385807
iter 40 value 85.516437
iter 50 value 83.433858
iter 60 value 81.678693
iter 70 value 80.219390
iter 80 value 79.646707
iter 90 value 79.570158
iter 100 value 79.522425
final value 79.522425
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.564906
iter 10 value 91.041711
iter 20 value 86.067244
iter 30 value 84.832484
iter 40 value 84.315924
iter 50 value 83.370151
iter 60 value 81.779940
iter 70 value 81.155184
iter 80 value 80.608989
iter 90 value 80.046966
iter 100 value 79.652041
final value 79.652041
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.186431
iter 10 value 93.962259
iter 20 value 92.305584
iter 30 value 83.804708
iter 40 value 83.218854
iter 50 value 80.908238
iter 60 value 80.008716
iter 70 value 79.722624
iter 80 value 79.580795
iter 90 value 79.426614
iter 100 value 79.288815
final value 79.288815
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.116592
iter 10 value 94.019769
iter 20 value 84.848374
iter 30 value 84.028492
iter 40 value 83.483447
iter 50 value 82.526073
iter 60 value 81.360972
iter 70 value 80.106424
iter 80 value 79.996892
iter 90 value 79.762991
iter 100 value 79.655316
final value 79.655316
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 111.336454
final value 94.060378
converged
Fitting Repeat 2
# weights: 103
initial value 94.343691
final value 94.054526
converged
Fitting Repeat 3
# weights: 103
initial value 96.196631
iter 10 value 94.018881
iter 20 value 93.459326
final value 91.608258
converged
Fitting Repeat 4
# weights: 103
initial value 100.801479
iter 10 value 94.054824
iter 20 value 94.030956
iter 30 value 83.486563
iter 40 value 82.356204
iter 50 value 82.196487
iter 60 value 82.165074
iter 70 value 82.137417
iter 80 value 82.045618
final value 82.033980
converged
Fitting Repeat 5
# weights: 103
initial value 96.873117
final value 94.054529
converged
Fitting Repeat 1
# weights: 305
initial value 96.821114
iter 10 value 93.841094
iter 20 value 93.487657
iter 30 value 93.474878
iter 40 value 93.324648
iter 50 value 92.195265
iter 60 value 89.691660
iter 70 value 88.930871
iter 80 value 86.233043
iter 90 value 86.128715
iter 100 value 86.126237
final value 86.126237
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 94.921730
iter 10 value 92.271317
iter 20 value 91.611886
iter 30 value 91.611478
iter 40 value 91.609954
iter 50 value 91.607152
iter 60 value 91.606832
final value 91.606828
converged
Fitting Repeat 3
# weights: 305
initial value 99.535558
iter 10 value 91.335504
iter 20 value 91.334042
iter 30 value 87.379793
iter 40 value 83.664304
iter 50 value 82.620894
iter 60 value 82.542346
final value 82.541778
converged
Fitting Repeat 4
# weights: 305
initial value 98.890847
iter 10 value 94.021889
iter 20 value 87.149305
iter 30 value 83.682686
iter 40 value 82.171396
iter 50 value 81.834630
iter 60 value 81.686364
iter 70 value 81.685920
iter 80 value 81.654123
iter 90 value 81.626933
final value 81.626849
converged
Fitting Repeat 5
# weights: 305
initial value 96.131108
iter 10 value 94.057753
iter 20 value 94.022286
iter 30 value 93.461251
iter 40 value 90.037355
iter 50 value 87.075057
iter 60 value 87.061618
iter 70 value 87.059983
iter 80 value 87.059861
iter 90 value 87.058583
iter 100 value 87.046745
final value 87.046745
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 98.526737
iter 10 value 93.844801
iter 20 value 93.030795
iter 30 value 84.861961
iter 40 value 84.845933
iter 50 value 84.780664
iter 60 value 84.416987
iter 70 value 84.269558
iter 80 value 84.269144
iter 90 value 84.193439
iter 100 value 81.611042
final value 81.611042
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.916092
iter 10 value 91.118214
iter 20 value 86.899918
iter 30 value 86.844536
iter 40 value 86.448783
iter 50 value 86.417630
iter 60 value 85.352293
iter 70 value 85.088715
iter 80 value 85.083303
iter 90 value 84.241864
iter 100 value 83.224038
final value 83.224038
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 94.146396
iter 10 value 94.056985
iter 20 value 93.182150
iter 30 value 91.439543
iter 40 value 91.435987
iter 50 value 90.538316
iter 60 value 90.466673
iter 70 value 90.465489
iter 80 value 90.388652
iter 90 value 90.249619
iter 100 value 90.248152
final value 90.248152
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.578289
iter 10 value 94.061378
iter 20 value 92.902065
iter 30 value 92.552253
iter 40 value 92.550344
iter 50 value 92.550202
final value 92.550025
converged
Fitting Repeat 5
# weights: 507
initial value 96.755465
iter 10 value 91.607899
iter 20 value 91.396377
iter 30 value 91.392780
final value 91.390601
converged
Fitting Repeat 1
# weights: 103
initial value 104.910432
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 100.647091
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 111.493290
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.231692
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 97.220449
iter 10 value 93.674889
final value 93.671508
converged
Fitting Repeat 1
# weights: 305
initial value 101.470406
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 113.830382
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 97.521922
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 95.370533
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 103.012370
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 104.678151
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 104.970909
iter 10 value 93.936341
iter 20 value 93.018237
iter 30 value 90.310320
iter 40 value 85.791275
iter 50 value 83.526086
iter 60 value 82.901917
iter 70 value 82.862153
iter 80 value 82.834332
iter 90 value 81.637333
final value 81.420794
converged
Fitting Repeat 3
# weights: 507
initial value 115.118638
final value 94.038251
converged
Fitting Repeat 4
# weights: 507
initial value 101.776197
final value 94.027933
converged
Fitting Repeat 5
# weights: 507
initial value 100.015145
iter 10 value 94.000000
iter 10 value 94.000000
iter 10 value 94.000000
final value 94.000000
converged
Fitting Repeat 1
# weights: 103
initial value 100.534996
iter 10 value 93.986191
iter 20 value 90.800389
iter 30 value 85.482631
iter 40 value 81.274019
iter 50 value 79.642535
iter 60 value 79.305292
iter 70 value 78.882620
iter 80 value 78.836111
final value 78.835138
converged
Fitting Repeat 2
# weights: 103
initial value 101.365224
iter 10 value 93.973989
iter 20 value 92.528198
iter 30 value 91.509711
iter 40 value 91.236423
iter 50 value 91.021015
iter 60 value 90.594241
iter 70 value 85.846228
iter 80 value 84.077841
iter 90 value 83.681612
iter 100 value 83.025335
final value 83.025335
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.735543
iter 10 value 94.214382
iter 20 value 94.056140
iter 30 value 93.245252
iter 40 value 91.675342
iter 50 value 87.758888
iter 60 value 87.284328
iter 70 value 85.305994
iter 80 value 83.345128
iter 90 value 83.013010
iter 100 value 82.959091
final value 82.959091
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 104.304875
iter 10 value 93.897412
iter 20 value 86.306268
iter 30 value 84.656763
iter 40 value 83.758681
iter 50 value 83.303843
iter 60 value 82.676542
iter 70 value 81.115302
iter 80 value 79.781879
iter 90 value 79.674700
iter 100 value 79.673174
final value 79.673174
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.549313
iter 10 value 94.055147
iter 20 value 93.201668
iter 30 value 91.473889
iter 40 value 91.068844
iter 50 value 91.061629
final value 91.061622
converged
Fitting Repeat 1
# weights: 305
initial value 99.531547
iter 10 value 93.019804
iter 20 value 83.552923
iter 30 value 82.822996
iter 40 value 82.175282
iter 50 value 81.383145
iter 60 value 80.069904
iter 70 value 78.374034
iter 80 value 78.131498
iter 90 value 77.990130
iter 100 value 77.760129
final value 77.760129
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.306018
iter 10 value 88.571626
iter 20 value 84.754380
iter 30 value 83.813731
iter 40 value 83.107420
iter 50 value 82.999860
iter 60 value 82.513706
iter 70 value 79.908121
iter 80 value 79.012501
iter 90 value 78.403379
iter 100 value 78.212999
final value 78.212999
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.721712
iter 10 value 94.000916
iter 20 value 89.905272
iter 30 value 89.119503
iter 40 value 86.142303
iter 50 value 82.542222
iter 60 value 79.073130
iter 70 value 78.032376
iter 80 value 77.701858
iter 90 value 77.624038
iter 100 value 77.530792
final value 77.530792
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.608901
iter 10 value 90.833091
iter 20 value 84.649490
iter 30 value 84.254268
iter 40 value 82.095088
iter 50 value 81.654044
iter 60 value 81.051605
iter 70 value 78.857692
iter 80 value 77.953639
iter 90 value 77.791109
iter 100 value 77.718682
final value 77.718682
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.712199
iter 10 value 93.955986
iter 20 value 84.072819
iter 30 value 83.230522
iter 40 value 82.565794
iter 50 value 81.349095
iter 60 value 79.782502
iter 70 value 79.540253
iter 80 value 79.405434
iter 90 value 79.159328
iter 100 value 78.856583
final value 78.856583
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.629288
iter 10 value 94.169489
iter 20 value 90.237610
iter 30 value 85.271935
iter 40 value 82.587318
iter 50 value 79.069647
iter 60 value 78.631071
iter 70 value 77.866100
iter 80 value 77.767998
iter 90 value 77.732985
iter 100 value 77.548933
final value 77.548933
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.355910
iter 10 value 93.923053
iter 20 value 88.377268
iter 30 value 83.217279
iter 40 value 82.271253
iter 50 value 80.301977
iter 60 value 78.873348
iter 70 value 77.717910
iter 80 value 77.622042
iter 90 value 77.549232
iter 100 value 77.340271
final value 77.340271
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.873965
iter 10 value 95.662878
iter 20 value 94.085634
iter 30 value 84.343920
iter 40 value 83.270395
iter 50 value 82.346179
iter 60 value 81.651519
iter 70 value 81.383809
iter 80 value 80.694830
iter 90 value 79.098186
iter 100 value 78.227920
final value 78.227920
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 120.676466
iter 10 value 93.701898
iter 20 value 85.487551
iter 30 value 83.780177
iter 40 value 83.399424
iter 50 value 81.874441
iter 60 value 81.266181
iter 70 value 80.871063
iter 80 value 80.580941
iter 90 value 80.002852
iter 100 value 79.700479
final value 79.700479
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 124.877447
iter 10 value 93.970335
iter 20 value 87.131082
iter 30 value 84.249275
iter 40 value 81.692355
iter 50 value 80.314345
iter 60 value 79.679777
iter 70 value 78.850004
iter 80 value 78.373362
iter 90 value 77.984442
iter 100 value 77.811472
final value 77.811472
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.545870
final value 94.054536
converged
Fitting Repeat 2
# weights: 103
initial value 98.965031
iter 10 value 94.054632
iter 20 value 94.047757
iter 30 value 93.928063
iter 40 value 89.525856
iter 50 value 81.786892
iter 60 value 81.076477
iter 70 value 81.033353
iter 80 value 80.899953
iter 90 value 80.898319
final value 80.897371
converged
Fitting Repeat 3
# weights: 103
initial value 99.147222
iter 10 value 94.001657
iter 20 value 93.768576
iter 30 value 93.726254
final value 93.726149
converged
Fitting Repeat 4
# weights: 103
initial value 99.503462
final value 94.039845
converged
Fitting Repeat 5
# weights: 103
initial value 101.698124
iter 10 value 94.054068
final value 94.052912
converged
Fitting Repeat 1
# weights: 305
initial value 95.698322
iter 10 value 94.043010
iter 20 value 91.375955
iter 30 value 87.612968
final value 87.612961
converged
Fitting Repeat 2
# weights: 305
initial value 102.548313
iter 10 value 94.043053
iter 20 value 93.961803
iter 30 value 88.544458
iter 40 value 85.223419
iter 50 value 85.221540
iter 60 value 85.220592
final value 85.219762
converged
Fitting Repeat 3
# weights: 305
initial value 95.943764
iter 10 value 94.042953
iter 20 value 93.995121
iter 30 value 84.814697
iter 40 value 84.780352
iter 50 value 84.779773
iter 60 value 83.438157
iter 70 value 80.890896
iter 80 value 79.668357
iter 90 value 78.691199
iter 100 value 76.719009
final value 76.719009
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.884566
iter 10 value 94.043069
iter 20 value 93.733491
iter 30 value 93.715008
iter 40 value 93.682343
final value 93.681549
converged
Fitting Repeat 5
# weights: 305
initial value 99.942134
iter 10 value 94.057516
iter 20 value 85.364030
iter 30 value 85.158506
iter 40 value 85.157538
iter 40 value 85.157538
final value 85.157538
converged
Fitting Repeat 1
# weights: 507
initial value 105.971056
iter 10 value 94.025544
iter 20 value 94.018958
final value 94.018854
converged
Fitting Repeat 2
# weights: 507
initial value 100.111033
iter 10 value 93.336880
iter 20 value 93.332196
iter 30 value 93.328729
iter 40 value 91.903258
iter 50 value 82.739939
iter 60 value 82.101005
iter 70 value 82.069956
iter 80 value 82.055255
iter 90 value 82.054984
final value 82.054948
converged
Fitting Repeat 3
# weights: 507
initial value 107.165449
iter 10 value 93.901084
iter 20 value 93.760645
iter 30 value 90.713508
final value 90.713311
converged
Fitting Repeat 4
# weights: 507
initial value 105.144941
iter 10 value 94.046772
iter 20 value 93.898340
iter 30 value 84.393470
iter 40 value 83.225615
iter 50 value 79.912633
iter 60 value 79.843610
iter 70 value 79.740385
iter 80 value 79.728918
iter 90 value 79.163424
iter 100 value 77.070732
final value 77.070732
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 135.837942
iter 10 value 94.049057
iter 20 value 94.042568
iter 30 value 94.041190
iter 40 value 90.390585
iter 50 value 88.646866
iter 60 value 88.570465
final value 88.570220
converged
Fitting Repeat 1
# weights: 103
initial value 102.301948
final value 94.466823
converged
Fitting Repeat 2
# weights: 103
initial value 119.510621
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 106.882299
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.953269
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 103.799553
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 99.012834
iter 10 value 94.364119
final value 94.104010
converged
Fitting Repeat 2
# weights: 305
initial value 101.555412
iter 10 value 94.390339
iter 20 value 89.143716
iter 30 value 89.143455
final value 89.143454
converged
Fitting Repeat 3
# weights: 305
initial value 120.251062
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 96.041044
final value 94.428839
converged
Fitting Repeat 5
# weights: 305
initial value 96.320327
final value 94.436784
converged
Fitting Repeat 1
# weights: 507
initial value 113.586312
iter 10 value 91.619218
iter 20 value 87.653284
final value 87.617659
converged
Fitting Repeat 2
# weights: 507
initial value 102.773395
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 95.790046
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 100.044499
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 96.867351
iter 10 value 88.099207
iter 20 value 87.794955
final value 87.794643
converged
Fitting Repeat 1
# weights: 103
initial value 98.375404
iter 10 value 93.848766
iter 20 value 89.675225
iter 30 value 88.277250
iter 40 value 87.707864
iter 50 value 87.655750
iter 60 value 86.919782
iter 70 value 86.417785
iter 80 value 86.279734
iter 90 value 85.827367
iter 100 value 85.665431
final value 85.665431
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.146193
iter 10 value 94.487507
iter 20 value 94.297013
iter 30 value 94.065279
iter 40 value 93.958145
iter 50 value 88.858756
iter 60 value 88.650487
iter 70 value 88.071703
iter 80 value 86.500309
iter 90 value 86.160407
iter 100 value 86.088939
final value 86.088939
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 102.261953
iter 10 value 94.486836
iter 20 value 94.118716
iter 30 value 89.559225
iter 40 value 87.071813
iter 50 value 86.980181
iter 60 value 86.942818
iter 70 value 86.786036
iter 80 value 86.700227
iter 90 value 86.699336
iter 90 value 86.699336
iter 90 value 86.699336
final value 86.699336
converged
Fitting Repeat 4
# weights: 103
initial value 105.379995
iter 10 value 93.247468
iter 20 value 92.747093
iter 30 value 92.724813
final value 92.724718
converged
Fitting Repeat 5
# weights: 103
initial value 98.186888
iter 10 value 94.496291
iter 20 value 94.416593
iter 30 value 93.991762
iter 40 value 93.968286
iter 50 value 93.967495
iter 60 value 92.855915
iter 70 value 88.563974
iter 80 value 88.082346
iter 90 value 87.809204
iter 100 value 86.565081
final value 86.565081
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 101.155240
iter 10 value 94.931798
iter 20 value 88.308760
iter 30 value 87.014280
iter 40 value 86.685242
iter 50 value 86.541658
iter 60 value 86.036055
iter 70 value 85.332245
iter 80 value 84.886050
iter 90 value 84.662994
iter 100 value 84.583909
final value 84.583909
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.655486
iter 10 value 94.444563
iter 20 value 90.029604
iter 30 value 87.953224
iter 40 value 87.666612
iter 50 value 86.772799
iter 60 value 85.202135
iter 70 value 84.862138
iter 80 value 84.815599
iter 90 value 84.776859
iter 100 value 84.770231
final value 84.770231
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.167160
iter 10 value 95.094498
iter 20 value 94.434874
iter 30 value 91.228447
iter 40 value 89.338554
iter 50 value 88.754911
iter 60 value 86.626779
iter 70 value 85.873905
iter 80 value 85.536467
iter 90 value 85.390834
iter 100 value 85.097714
final value 85.097714
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 121.204411
iter 10 value 94.050304
iter 20 value 88.842198
iter 30 value 88.168703
iter 40 value 87.772298
iter 50 value 86.808027
iter 60 value 85.668178
iter 70 value 85.328159
iter 80 value 84.924699
iter 90 value 84.876669
iter 100 value 84.830394
final value 84.830394
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 134.182099
iter 10 value 94.632813
iter 20 value 94.438756
iter 30 value 93.952358
iter 40 value 93.395433
iter 50 value 92.999654
iter 60 value 92.735537
iter 70 value 92.674978
iter 80 value 92.582657
iter 90 value 92.359822
iter 100 value 91.632073
final value 91.632073
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.802906
iter 10 value 95.125645
iter 20 value 91.064149
iter 30 value 88.622313
iter 40 value 87.348296
iter 50 value 87.092934
iter 60 value 86.689511
iter 70 value 86.153151
iter 80 value 85.942743
iter 90 value 85.851711
iter 100 value 85.549584
final value 85.549584
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 126.898223
iter 10 value 94.492275
iter 20 value 92.141166
iter 30 value 87.301501
iter 40 value 86.284163
iter 50 value 85.836413
iter 60 value 85.257497
iter 70 value 84.618099
iter 80 value 84.599447
iter 90 value 84.566666
iter 100 value 84.559298
final value 84.559298
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.749814
iter 10 value 95.589719
iter 20 value 90.326239
iter 30 value 88.038776
iter 40 value 86.239802
iter 50 value 85.588012
iter 60 value 85.455854
iter 70 value 85.192234
iter 80 value 84.847883
iter 90 value 84.645303
iter 100 value 84.490784
final value 84.490784
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.791567
iter 10 value 94.505063
iter 20 value 92.108765
iter 30 value 91.084225
iter 40 value 89.839196
iter 50 value 89.696296
iter 60 value 87.999320
iter 70 value 87.481319
iter 80 value 85.967150
iter 90 value 85.038207
iter 100 value 84.659840
final value 84.659840
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.103718
iter 10 value 94.813358
iter 20 value 91.219249
iter 30 value 90.156152
iter 40 value 89.805037
iter 50 value 89.431893
iter 60 value 88.943461
iter 70 value 87.276771
iter 80 value 86.043117
iter 90 value 85.776889
iter 100 value 85.719491
final value 85.719491
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.801110
final value 94.485681
converged
Fitting Repeat 2
# weights: 103
initial value 100.156030
iter 10 value 93.247598
iter 20 value 92.642508
final value 92.639657
converged
Fitting Repeat 3
# weights: 103
initial value 98.799209
final value 94.485639
converged
Fitting Repeat 4
# weights: 103
initial value 98.273332
final value 94.485865
converged
Fitting Repeat 5
# weights: 103
initial value 95.135888
final value 94.485813
converged
Fitting Repeat 1
# weights: 305
initial value 106.558326
iter 10 value 94.495272
iter 20 value 94.459930
iter 30 value 93.980264
iter 40 value 93.975847
iter 50 value 93.969594
iter 60 value 93.400069
iter 70 value 89.911750
iter 80 value 87.861509
iter 90 value 85.272618
iter 100 value 84.776330
final value 84.776330
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 112.636770
iter 10 value 94.489823
iter 20 value 94.484475
final value 94.484470
converged
Fitting Repeat 3
# weights: 305
initial value 116.590732
iter 10 value 94.489142
iter 20 value 93.983133
iter 30 value 88.175921
iter 40 value 87.953422
iter 50 value 87.650318
iter 60 value 87.632202
iter 70 value 87.626509
iter 80 value 87.622398
iter 90 value 87.613115
iter 100 value 86.955012
final value 86.955012
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.868482
iter 10 value 94.471290
iter 20 value 94.433416
final value 94.430866
converged
Fitting Repeat 5
# weights: 305
initial value 95.567481
iter 10 value 94.488863
iter 20 value 94.484173
iter 30 value 92.132004
iter 40 value 87.517322
iter 50 value 86.627256
iter 60 value 86.486079
iter 70 value 86.484328
iter 70 value 86.484328
iter 80 value 86.478342
iter 90 value 86.477851
iter 100 value 86.476025
final value 86.476025
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.090524
iter 10 value 94.038440
iter 20 value 93.977530
iter 30 value 93.974085
iter 40 value 93.586885
iter 50 value 87.304874
iter 60 value 87.114478
iter 70 value 87.099328
iter 80 value 87.080094
iter 90 value 87.076270
final value 87.076257
converged
Fitting Repeat 2
# weights: 507
initial value 105.219318
iter 10 value 94.038422
iter 20 value 94.031112
iter 30 value 93.948447
iter 40 value 93.845093
iter 50 value 93.330498
iter 60 value 90.358790
iter 70 value 86.777917
iter 80 value 86.404747
iter 80 value 86.404746
final value 86.404746
converged
Fitting Repeat 3
# weights: 507
initial value 140.854491
iter 10 value 94.463775
iter 20 value 94.048494
iter 30 value 89.425389
iter 40 value 87.304854
iter 50 value 84.745245
iter 60 value 84.700552
iter 70 value 84.406560
iter 80 value 84.288305
iter 90 value 84.283431
iter 100 value 84.282812
final value 84.282812
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 97.722462
iter 10 value 94.491389
iter 20 value 94.237366
iter 30 value 87.973726
final value 87.939139
converged
Fitting Repeat 5
# weights: 507
initial value 101.079989
iter 10 value 93.996485
iter 20 value 93.983289
iter 30 value 93.980502
iter 40 value 93.977041
iter 50 value 93.976524
iter 60 value 93.974846
final value 93.974492
converged
Fitting Repeat 1
# weights: 507
initial value 151.367716
iter 10 value 117.766737
iter 20 value 117.563677
iter 30 value 117.551676
final value 117.551306
converged
Fitting Repeat 2
# weights: 507
initial value 135.373744
iter 10 value 117.747596
iter 20 value 117.743500
iter 30 value 111.544903
iter 40 value 107.429578
iter 50 value 103.884973
iter 60 value 103.752904
iter 70 value 103.404494
iter 80 value 102.882144
iter 90 value 102.388278
final value 102.383901
converged
Fitting Repeat 3
# weights: 507
initial value 147.618058
iter 10 value 117.899978
iter 20 value 117.891210
iter 30 value 116.465405
iter 40 value 105.572624
iter 50 value 105.159941
iter 60 value 105.140378
iter 70 value 105.028348
iter 80 value 105.000483
iter 90 value 104.934780
iter 100 value 103.599836
final value 103.599836
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 133.044235
iter 10 value 117.899283
iter 20 value 117.607096
iter 30 value 107.794108
iter 40 value 105.377590
iter 50 value 105.360346
iter 60 value 104.223920
iter 70 value 103.290245
iter 80 value 103.287484
iter 90 value 103.280434
iter 100 value 103.256534
final value 103.256534
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 132.444924
iter 10 value 117.898441
iter 20 value 117.885168
iter 30 value 117.065148
iter 40 value 106.765497
iter 50 value 106.601232
iter 60 value 106.038306
iter 70 value 102.278995
iter 80 value 101.679387
iter 90 value 101.674136
iter 100 value 101.670307
final value 101.670307
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue Apr 21 20:20:07 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.073 0.702 83.503
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 17.219 | 0.097 | 17.423 | |
| FreqInteractors | 0.161 | 0.007 | 0.168 | |
| calculateAAC | 0.013 | 0.001 | 0.014 | |
| calculateAutocor | 0.244 | 0.006 | 0.250 | |
| calculateCTDC | 0.032 | 0.005 | 0.037 | |
| calculateCTDD | 0.157 | 0.009 | 0.165 | |
| calculateCTDT | 0.053 | 0.002 | 0.055 | |
| calculateCTriad | 0.144 | 0.006 | 0.150 | |
| calculateDC | 0.031 | 0.003 | 0.034 | |
| calculateF | 0.098 | 0.001 | 0.099 | |
| calculateKSAAP | 0.036 | 0.003 | 0.039 | |
| calculateQD_Sm | 0.697 | 0.026 | 0.726 | |
| calculateTC | 0.567 | 0.045 | 0.615 | |
| calculateTC_Sm | 0.133 | 0.008 | 0.143 | |
| corr_plot | 17.183 | 0.102 | 17.375 | |
| enrichfindP | 0.202 | 0.040 | 10.289 | |
| enrichfind_hp | 0.015 | 0.001 | 0.945 | |
| enrichplot | 0.169 | 0.004 | 0.173 | |
| filter_missing_values | 0 | 0 | 0 | |
| getFASTA | 0.031 | 0.007 | 3.497 | |
| getHPI | 0 | 0 | 0 | |
| get_negativePPI | 0.000 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.001 | 0.001 | |
| plotPPI | 0.030 | 0.001 | 0.031 | |
| pred_ensembel | 6.429 | 0.165 | 5.837 | |
| var_imp | 17.063 | 0.154 | 17.418 | |