Multiple platform build/check report for BioC 3.23 - INSTALL results for HEM on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4829
lconway	macOS 12.7.6 Monterey	x86_64	R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"	4602
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4566
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for HEM on kjohnson3

To the developers/maintainers of the HEM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HEM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: HEM

Version: 1.83.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HEM

StartedAt: 2025-11-20 15:07:00 -0500 (Thu, 20 Nov 2025)

EndedAt: 2025-11-20 15:07:02 -0500 (Thu, 20 Nov 2025)

EllapsedTime: 2.3 seconds

RetCode: 1

Status: ERROR

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HEM
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘HEM’ ...
** this is package ‘HEM’ version ‘1.83.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c hem.c -o hem.o
In file included from hem.c:17:
./random4f.h:126:18: error: unknown type name 'alpha'
double gammadist(alpha)
                 ^
./random4f.h:126:24: error: expected ';' after top level declarator
double gammadist(alpha)
                       ^
                       ;
./random4f.h:128:1: error: expected identifier or '('
{ double u0,x,y;
^
hem.c:980:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
        double temp, temp2, MHratio, U, old, new, raccept;
                                                  ^
hem.c:1079:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
        double temp, temp2, MHratio, U, old, new, raccept;
                                                  ^
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
        int i, j, k, m, n;
                  ^
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
  int i, j, k, l;
               ^
4 warnings and 3 errors generated.
make: *** [hem.o] Error 1
ERROR: compilation failed for package ‘HEM’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/HEM’