| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-11-01 11:32 -0400 (Sat, 01 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4774 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 696/2321 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ExperimentHub 3.1.0 (landing page) Bioconductor Package Maintainer
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
|
To the developers/maintainers of the ExperimentHub package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ExperimentHub.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ExperimentHub |
| Version: 3.1.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings ExperimentHub_3.1.0.tar.gz |
| StartedAt: 2025-10-31 23:17:20 -0400 (Fri, 31 Oct 2025) |
| EndedAt: 2025-10-31 23:19:29 -0400 (Fri, 31 Oct 2025) |
| EllapsedTime: 129.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ExperimentHub.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings ExperimentHub_3.1.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/ExperimentHub.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘ExperimentHub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ExperimentHub’ version ‘3.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ExperimentHub’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘utils’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) ExperimentHub-class.Rd:74-87: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:104-107: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:108-112: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:113-119: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:120-124: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:125-130: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:131-165: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:173-177: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:178-182: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:183-194: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:195-216: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:217-225: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:226-230: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:231-235: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:242-246: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:247-251: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:252-263: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:264-267: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:268-271: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:272-279: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:280-287: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:288-293: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:300-304: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:305-309: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc/meat/ExperimentHub.Rcheck/00check.log’
for details.
ExperimentHub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL ExperimentHub ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘ExperimentHub’ ... ** this is package ‘ExperimentHub’ version ‘3.1.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ExperimentHub)
ExperimentHub.Rcheck/ExperimentHub-Ex.timings
| name | user | system | elapsed | |
| ExperimentHub-class | 1.695 | 0.174 | 2.060 | |
| getExperimentHubOption | 0.000 | 0.000 | 0.001 | |
| listResources | 1.877 | 0.280 | 2.608 | |