| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 666/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EnrichmentBrowser 2.43.0 (landing page) Ludwig Geistlinger
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for EnrichmentBrowser in R Universe. | ||||||||||||||
|
To the developers/maintainers of the EnrichmentBrowser package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EnrichmentBrowser.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: EnrichmentBrowser |
| Version: 2.43.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichmentBrowser |
| StartedAt: 2026-05-05 02:56:33 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 02:58:17 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 104.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichmentBrowser
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* checking for file ‘EnrichmentBrowser/DESCRIPTION’ ... OK
* preparing ‘EnrichmentBrowser’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EnrichmentBrowser.Rmd’ using rmarkdown
Quitting from EnrichmentBrowser.Rmd:686-689 [compile-grn]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `fetchRemote()`:
! cannot download pathway data: are you offline?
---
Backtrace:
▆
1. └─EnrichmentBrowser::compileGRN(org = "hsa", db = "kegg")
2. └─EnrichmentBrowser:::.compileGRNFromGraphite(...)
3. └─base::lapply(...)
4. └─EnrichmentBrowser (local) FUN(X[[i]], ...)
5. ├─EnrichmentBrowser:::.processDB(...)
6. │ └─base::tolower(pwys@name)
7. └─graphite::pathways(gorg, d)
8. └─graphite:::loadData(paste(species, database, sep = "-"))
9. └─graphite:::withArchiveDir(...)
10. └─graphite (local) func(path)
11. └─graphite:::fetchRemote(name, path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'EnrichmentBrowser.Rmd' failed with diagnostics:
cannot download pathway data: are you offline?
--- failed re-building ‘EnrichmentBrowser.Rmd’
SUMMARY: processing the following file failed:
‘EnrichmentBrowser.Rmd’
Error: Vignette re-building failed.
Execution halted