Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-09-22 12:06 -0400 (Mon, 22 Sep 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4814 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4603 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4547 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4553 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 559/2333 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DepecheR 1.25.0 (landing page) Jakob Theorell
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the DepecheR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DepecheR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: DepecheR |
Version: 1.25.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data DepecheR |
StartedAt: 2025-09-19 00:12:10 -0000 (Fri, 19 Sep 2025) |
EndedAt: 2025-09-19 00:13:49 -0000 (Fri, 19 Sep 2025) |
EllapsedTime: 99.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data DepecheR ### ############################################################################## ############################################################################## * checking for file ‘DepecheR/DESCRIPTION’ ... OK * preparing ‘DepecheR’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DepecheR_test.Rmd’ using rmarkdown --- finished re-building ‘DepecheR_test.Rmd’ --- re-building ‘GroupProbPlot_usage.Rmd’ using rmarkdown Could not fetch https://raw.githubusercontent.com/jtheorell/DepecheRVinjettePics/master/ProbPlotExample.png HttpExceptionRequest Request { host = "raw.githubusercontent.com" port = 443 secure = True requestHeaders = [] path = "/jtheorell/DepecheRVinjettePics/master/ProbPlotExample.png" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } ConnectionTimeout Error: processing vignette 'GroupProbPlot_usage.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building ‘GroupProbPlot_usage.Rmd’ SUMMARY: processing the following file failed: ‘GroupProbPlot_usage.Rmd’ Error: Vignette re-building failed. Execution halted