| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-02-14 11:32 -0500 (Sat, 14 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4864 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 519/2352 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DaMiRseq 2.23.0 (landing page) Mattia Chiesa
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for DaMiRseq in R Universe. | ||||||||||||||
|
To the developers/maintainers of the DaMiRseq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DaMiRseq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DaMiRseq |
| Version: 2.23.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DaMiRseq |
| StartedAt: 2026-02-13 17:14:44 -0500 (Fri, 13 Feb 2026) |
| EndedAt: 2026-02-13 17:20:10 -0500 (Fri, 13 Feb 2026) |
| EllapsedTime: 326.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DaMiRseq
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* checking for file ‘DaMiRseq/DESCRIPTION’ ... OK
* preparing ‘DaMiRseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘DaMiRseq.Rnw’ using knitr
Quitting from DaMiRseq.Rnw:589-633 [chu_17bis2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `DaMiR.FReduct()`:
! 'data' must be a data.frame
---
Backtrace:
x
1. \-DaMiRseq::DaMiR.FReduct(data_reduced$data, th.corr = 0.9)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'DaMiRseq.Rnw' failed with diagnostics:
'data' must be a data.frame
--- failed re-building ‘DaMiRseq.Rnw’
SUMMARY: processing the following file failed:
‘DaMiRseq.Rnw’
Error: Vignette re-building failed.
Execution halted