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This page was generated on 2025-09-22 12:04 -0400 (Mon, 22 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4814
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4603
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4547
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4553
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 543/2333HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEGreport 1.45.0  (landing page)
Lorena Pantano
Snapshot Date: 2025-09-21 13:45 -0400 (Sun, 21 Sep 2025)
git_url: https://git.bioconductor.org/packages/DEGreport
git_branch: devel
git_last_commit: 80182e1
git_last_commit_date: 2025-04-15 10:31:54 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for DEGreport on lconway

To the developers/maintainers of the DEGreport package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DEGreport.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DEGreport
Version: 1.45.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DEGreport
StartedAt: 2025-09-21 16:37:37 -0400 (Sun, 21 Sep 2025)
EndedAt: 2025-09-21 16:38:35 -0400 (Sun, 21 Sep 2025)
EllapsedTime: 58.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DEGreport
###
##############################################################################
##############################################################################


* checking for file ‘DEGreport/DESCRIPTION’ ... OK
* preparing ‘DEGreport’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEGreport.Rmd’ using rmarkdown
2025-09-21 16:38:33.925 R[26703:338517241] XType: com.apple.fonts is not accessible.
2025-09-21 16:38:33.926 R[26703:338517241] XType: XTFontStaticRegistry is enabled.

Quitting from DEGreport.Rmd:93-95 [qc]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::labels> object is invalid:
- every label must be named.
---
Backtrace:
    ▆
 1. └─DEGreport::degQC(counts, design[["group"]], pvalue = res[["pvalue"]])
 2.   └─DEGreport::degMean(pvalue, counts)
 3.     └─ggplot2::labs(list(x = "p-values", y = "# genes"))
 4.       └─ggplot2::class_labels(args)
 5.         └─S7::new_object(labels)
 6.           └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DEGreport.Rmd' failed with diagnostics:
<ggplot2::labels> object is invalid:
- every label must be named.
--- failed re-building ‘DEGreport.Rmd’

SUMMARY: processing the following file failed:
  ‘DEGreport.Rmd’

Error: Vignette re-building failed.
Execution halted